Wall clock time and date at job start Sun Mar 29 2020 21:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00402 * 2 1 4 4 H 1.48492 * 109.46848 * 239.99822 * 3 2 1 5 5 H 1.48505 * 109.46575 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47111 * 119.99400 * 3 2 1 7 7 C 1.37882 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00340 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99689 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50700 * 299.92139 * 9 7 2 11 11 C 1.53123 * 109.50437 * 59.99803 * 9 7 2 12 12 C 1.53120 * 109.21163 * 177.60152 * 11 9 7 13 13 C 1.53048 * 109.27450 * 302.43753 * 12 11 9 14 14 N 1.46848 * 109.57298 * 59.08726 * 13 12 11 15 15 C 1.46892 * 110.99938 * 174.18963 * 14 13 12 16 16 C 1.53007 * 109.47321 * 294.21122 * 15 14 13 17 17 C 1.54266 * 110.03036 * 292.16827 * 16 15 14 18 18 C 1.54891 * 104.19626 * 217.10684 * 17 16 15 19 19 C 1.54891 * 102.74851 * 37.93903 * 18 17 16 20 20 C 1.53877 * 110.03329 * 175.00015 * 16 15 14 21 21 C 1.46842 * 111.19688 * 298.28804 * 14 13 12 22 22 H 0.97009 * 119.99996 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.52319 * 297.53946 * 11 9 7 24 24 H 1.08995 * 109.52318 * 57.66627 * 11 9 7 25 25 H 1.09000 * 109.50719 * 62.32149 * 12 11 9 26 26 H 1.09003 * 109.50116 * 182.43702 * 12 11 9 27 27 H 1.08999 * 109.41208 * 299.06816 * 13 12 11 28 28 H 1.08998 * 109.44995 * 179.12696 * 13 12 11 29 29 H 1.08998 * 109.47248 * 54.20814 * 15 14 13 30 30 H 1.09002 * 109.47520 * 174.21343 * 15 14 13 31 31 H 1.08994 * 110.01616 * 53.60455 * 16 15 14 32 32 H 1.09000 * 110.48733 * 335.78052 * 17 16 15 33 33 H 1.08995 * 110.48871 * 98.42421 * 17 16 15 34 34 H 1.09006 * 110.75481 * 279.62551 * 18 17 16 35 35 H 1.08996 * 110.91799 * 156.33284 * 18 17 16 36 36 H 1.09006 * 110.48428 * 203.38097 * 19 18 17 37 37 H 1.09001 * 110.59649 * 80.79731 * 19 18 17 38 38 H 1.08992 * 110.02809 * 238.56756 * 20 16 15 39 39 H 1.09002 * 110.03055 * 359.97438 * 20 16 15 40 40 H 1.09001 * 109.46203 * 301.72398 * 21 14 13 41 41 H 1.09004 * 109.46228 * 181.75951 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6248 -2.5579 0.8908 11 6 0.3708 -2.5812 -1.2497 12 6 -0.3457 -3.9343 -1.2736 13 6 0.6938 -5.0571 -1.2390 14 7 1.5096 -4.9349 -0.0242 15 6 2.4263 -6.0747 0.1111 16 6 1.6189 -7.3549 0.3354 17 6 0.9283 -7.3093 1.7141 18 6 1.0062 -8.7689 2.2264 19 6 2.4050 -9.2264 1.7436 20 6 2.5578 -8.5738 0.3542 21 6 2.2440 -3.6635 -0.0034 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3667 -1.7788 -1.2294 24 1 0.9921 -2.4824 -2.1398 25 1 -0.9977 -4.0162 -0.4039 26 1 -0.9401 -4.0153 -2.1837 27 1 1.3359 -4.9834 -2.1167 28 1 0.1862 -6.0217 -1.2402 29 1 3.0194 -6.1739 -0.7980 30 1 3.0887 -5.9095 0.9608 31 1 0.8743 -7.4691 -0.4523 32 1 1.4638 -6.6397 2.3871 33 1 -0.1106 -6.9963 1.6102 34 1 0.2233 -9.3789 1.7756 35 1 0.9425 -8.8035 3.3140 36 1 2.4437 -10.3127 1.6613 37 1 3.1804 -8.8682 2.4207 38 1 2.2683 -9.2800 -0.4239 39 1 3.5886 -8.2534 0.2030 40 1 2.8790 -3.5964 -0.8869 41 1 2.8628 -3.6161 0.8928 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397708252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:59 Heat of formation + Delta-G solvation = -28.978213 kcal Electronic energy + Delta-G solvation = -17584.989061 eV Core-core repulsion = 15077.081698 eV Total energy + Delta-G solvation = -2507.907364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.90377 -37.25119 -33.67630 -31.79780 -29.96608 -28.97473 -28.48293 -24.92898 -24.46054 -21.74364 -21.36448 -20.53746 -19.13666 -18.50885 -16.46171 -15.79393 -15.08158 -14.70666 -14.41757 -14.04473 -13.69358 -13.25123 -13.16033 -12.58783 -12.48088 -12.21460 -11.73184 -11.26243 -11.10026 -10.94740 -10.90700 -10.87352 -10.70833 -10.66505 -10.53677 -10.46204 -10.23825 -9.92479 -9.78272 -9.40852 -8.93857 -8.66201 -8.26028 -7.55799 -5.93700 -3.99848 3.34373 3.38942 3.41431 4.39745 4.53934 4.75206 4.79622 4.91767 5.32664 5.36077 5.52305 5.59956 5.66016 5.73177 5.74174 5.82656 5.88378 5.95987 5.96527 6.04833 6.13205 6.15053 6.21771 6.36401 6.38287 6.47520 6.52508 6.57581 6.65243 6.77816 6.81098 7.03053 7.27651 7.46237 7.75062 7.79893 7.91398 8.13727 8.22303 8.52912 9.04124 9.64135 11.12158 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.042655 B = 0.005277 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.266163 B = 5305.216158 C = 5507.883296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.062 3.938 14 N -0.536 5.536 15 C 0.062 3.938 16 C -0.089 4.089 17 C -0.103 4.103 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.121 4.121 21 C 0.068 3.932 22 H 0.260 0.740 23 H 0.090 0.910 24 H 0.028 0.972 25 H 0.060 0.940 26 H 0.044 0.956 27 H 0.019 0.981 28 H 0.059 0.941 29 H 0.022 0.978 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.016 0.984 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 -15.244 0.604 15.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.070 0.930 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.066 4.066 14 N -0.260 5.260 15 C -0.066 4.066 16 C -0.108 4.108 17 C -0.141 4.141 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.159 4.159 21 C -0.059 4.059 22 H 0.070 0.930 23 H 0.108 0.892 24 H 0.047 0.953 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.614 -15.108 1.000 15.227 hybrid contribution 1.090 0.943 -0.817 1.657 sum 2.705 -14.164 0.184 14.421 Atomic orbital electron populations 1.69885 1.05829 1.26361 1.50675 1.24928 0.94814 0.98886 0.95165 0.86699 0.79624 0.83359 0.78527 1.20423 1.21321 1.20317 1.21125 0.92764 0.90762 1.50717 0.92974 1.18649 0.92618 0.90263 0.94803 0.94824 1.21646 1.00001 0.94745 0.98443 1.21672 0.97221 0.96552 1.00038 1.22056 0.95710 0.98647 0.90214 1.61964 1.24124 1.02185 1.37737 1.22204 0.94088 0.90700 0.99599 1.21810 0.97133 0.93474 0.98388 1.22244 1.00969 0.95185 0.95707 1.22551 0.96688 0.97308 1.00093 1.22337 0.97578 0.99413 0.96746 1.22193 0.99738 0.96887 0.97076 1.22290 0.96359 0.88692 0.98530 0.93046 0.89180 0.95298 0.92165 0.93711 0.96229 0.92285 0.95992 0.91308 0.91171 0.91282 0.91628 0.92033 0.92008 0.92328 0.91838 0.92271 0.91972 0.96552 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 11.35 55.43 0.63 -24.98 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.31 8.57 -34.44 -0.30 -14.61 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.41 2.26 -91.69 -0.21 1.20 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.66 5.02 -26.61 -0.13 -2.80 16 12 C -0.12 -2.34 6.10 -26.64 -0.16 -2.50 16 13 C 0.06 1.11 5.30 -3.83 -0.02 1.09 16 14 N -0.54 -10.04 4.48 -234.67 -1.05 -11.09 16 15 C 0.06 0.97 4.01 -3.82 -0.02 0.95 16 16 C -0.09 -1.17 2.87 -89.50 -0.26 -1.43 16 17 C -0.10 -1.35 6.19 -25.07 -0.16 -1.51 16 18 C -0.13 -1.38 6.91 -24.74 -0.17 -1.55 16 19 C -0.12 -1.24 6.83 -25.07 -0.17 -1.41 16 20 C -0.12 -1.33 6.46 -25.61 -0.17 -1.49 16 21 C 0.07 1.49 4.68 -3.84 -0.02 1.47 16 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.94 6.11 -51.93 -0.32 0.63 16 29 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 31 H 0.07 0.95 6.21 -51.93 -0.32 0.63 16 32 H 0.07 0.98 7.76 -51.93 -0.40 0.58 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.23 8.02 -51.93 -0.42 0.82 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -27.86 308.84 -10.28 -38.14 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -7.62 Total: -2.25 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -1.87 Total: -20.89 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.42 Total: -36.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.86 -10.28 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397708252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.159 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds