Wall clock time and date at job start Sun Mar 29 2020 21:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00402 * 2 1 4 4 H 1.48492 * 109.46848 * 239.99822 * 3 2 1 5 5 H 1.48505 * 109.46575 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47111 * 119.99400 * 3 2 1 7 7 C 1.37882 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00340 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99689 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.50700 * 299.92139 * 9 7 2 11 11 C 1.53123 * 109.50437 * 59.99803 * 9 7 2 12 12 C 1.53120 * 109.21163 * 177.60152 * 11 9 7 13 13 C 1.53048 * 109.27450 * 302.43753 * 12 11 9 14 14 N 1.46848 * 109.57298 * 59.08726 * 13 12 11 15 15 C 1.46892 * 110.99938 * 174.18963 * 14 13 12 16 16 C 1.53007 * 109.47321 * 294.21122 * 15 14 13 17 17 C 1.54266 * 110.03036 * 292.16827 * 16 15 14 18 18 C 1.54891 * 104.19626 * 217.10684 * 17 16 15 19 19 C 1.54891 * 102.74851 * 37.93903 * 18 17 16 20 20 C 1.53877 * 110.03329 * 175.00015 * 16 15 14 21 21 C 1.46842 * 111.19688 * 298.28804 * 14 13 12 22 22 H 0.97009 * 119.99996 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.52319 * 297.53946 * 11 9 7 24 24 H 1.08995 * 109.52318 * 57.66627 * 11 9 7 25 25 H 1.09000 * 109.50719 * 62.32149 * 12 11 9 26 26 H 1.09003 * 109.50116 * 182.43702 * 12 11 9 27 27 H 1.08999 * 109.41208 * 299.06816 * 13 12 11 28 28 H 1.08998 * 109.44995 * 179.12696 * 13 12 11 29 29 H 1.08998 * 109.47248 * 54.20814 * 15 14 13 30 30 H 1.09002 * 109.47520 * 174.21343 * 15 14 13 31 31 H 1.08994 * 110.01616 * 53.60455 * 16 15 14 32 32 H 1.09000 * 110.48733 * 335.78052 * 17 16 15 33 33 H 1.08995 * 110.48871 * 98.42421 * 17 16 15 34 34 H 1.09006 * 110.75481 * 279.62551 * 18 17 16 35 35 H 1.08996 * 110.91799 * 156.33284 * 18 17 16 36 36 H 1.09006 * 110.48428 * 203.38097 * 19 18 17 37 37 H 1.09001 * 110.59649 * 80.79731 * 19 18 17 38 38 H 1.08992 * 110.02809 * 238.56756 * 20 16 15 39 39 H 1.09002 * 110.03055 * 359.97438 * 20 16 15 40 40 H 1.09001 * 109.46203 * 301.72398 * 21 14 13 41 41 H 1.09004 * 109.46228 * 181.75951 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6248 -2.5579 0.8908 11 6 0.3708 -2.5812 -1.2497 12 6 -0.3457 -3.9343 -1.2736 13 6 0.6938 -5.0571 -1.2390 14 7 1.5096 -4.9349 -0.0242 15 6 2.4263 -6.0747 0.1111 16 6 1.6189 -7.3549 0.3354 17 6 0.9283 -7.3093 1.7141 18 6 1.0062 -8.7689 2.2264 19 6 2.4050 -9.2264 1.7436 20 6 2.5578 -8.5738 0.3542 21 6 2.2440 -3.6635 -0.0034 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3667 -1.7788 -1.2294 24 1 0.9921 -2.4824 -2.1398 25 1 -0.9977 -4.0162 -0.4039 26 1 -0.9401 -4.0153 -2.1837 27 1 1.3359 -4.9834 -2.1167 28 1 0.1862 -6.0217 -1.2402 29 1 3.0194 -6.1739 -0.7980 30 1 3.0887 -5.9095 0.9608 31 1 0.8743 -7.4691 -0.4523 32 1 1.4638 -6.6397 2.3871 33 1 -0.1106 -6.9963 1.6102 34 1 0.2233 -9.3789 1.7756 35 1 0.9425 -8.8035 3.3140 36 1 2.4437 -10.3127 1.6613 37 1 3.1804 -8.8682 2.4207 38 1 2.2683 -9.2800 -0.4239 39 1 3.5886 -8.2534 0.2030 40 1 2.8790 -3.5964 -0.8869 41 1 2.8628 -3.6161 0.8928 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397708252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:58 Heat of formation + Delta-G solvation = -43.618142 kcal Electronic energy + Delta-G solvation = -17585.623896 eV Core-core repulsion = 15077.081698 eV Total energy + Delta-G solvation = -2508.542199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24825 -38.55724 -35.50062 -33.54436 -31.74967 -30.24322 -29.42236 -26.92208 -25.85104 -23.41551 -22.96616 -21.43076 -20.32053 -20.21223 -18.44119 -17.12017 -16.60470 -16.08912 -15.92536 -15.38227 -15.13345 -14.91444 -14.35847 -14.13917 -14.09117 -13.84705 -13.32845 -12.84932 -12.79162 -12.57643 -12.42156 -12.03987 -11.90044 -11.79977 -11.75950 -11.73867 -11.65037 -11.39598 -11.32004 -11.19439 -10.73335 -10.65805 -10.36169 -9.08079 -8.07688 -6.22270 1.41281 1.42773 1.50440 2.42838 3.10182 3.18944 3.80658 3.83669 3.89943 4.21118 4.24454 4.31998 4.43091 4.58039 4.61631 4.65903 4.69157 4.72998 4.82189 4.89814 4.91218 4.92828 4.98963 5.02083 5.12459 5.15064 5.18474 5.20357 5.32787 5.40267 5.48313 5.54076 5.55287 5.61287 5.63769 5.97586 6.13334 6.22437 6.41332 6.47217 6.90215 7.45534 8.96722 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.042655 B = 0.005277 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.266163 B = 5305.216158 C = 5507.883296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.539 4.539 8 H 0.050 0.950 9 C 0.054 3.946 10 H -0.005 1.005 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.066 3.934 14 N -0.544 5.544 15 C 0.064 3.936 16 C -0.085 4.085 17 C -0.107 4.107 18 C -0.124 4.124 19 C -0.120 4.120 20 C -0.117 4.117 21 C 0.082 3.918 22 H 0.260 0.740 23 H 0.058 0.942 24 H 0.020 0.980 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.022 0.978 28 H 0.089 0.911 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.012 0.988 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.794 -16.926 0.192 17.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.577 4.577 8 H 0.068 0.932 9 C 0.035 3.965 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.061 4.061 14 N -0.268 5.268 15 C -0.064 4.064 16 C -0.104 4.104 17 C -0.144 4.144 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.045 4.045 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.039 0.961 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.107 0.893 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.030 0.970 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.336 -16.809 0.589 16.981 hybrid contribution 0.843 1.468 -0.665 1.819 sum 3.179 -15.341 -0.076 15.667 Atomic orbital electron populations 1.70033 1.07193 1.27138 1.51098 1.25722 0.95663 1.02318 0.94704 0.85670 0.78432 0.79093 0.78799 1.19698 1.20825 1.19650 1.21500 0.92940 0.92267 1.51035 0.93168 1.18571 0.92967 0.91293 0.93693 0.98640 1.21456 0.99074 0.96344 0.97293 1.21584 0.97550 0.94864 1.00798 1.22048 0.95158 0.99057 0.89882 1.61910 1.24698 1.01884 1.38355 1.22287 0.93966 0.90390 0.99740 1.21788 0.97280 0.93078 0.98214 1.22224 0.99858 0.96677 0.95673 1.22525 0.97550 0.95483 1.00556 1.22339 0.96946 1.00470 0.96039 1.22175 0.99184 0.96023 0.98147 1.21957 0.95277 0.89214 0.98087 0.93046 0.92388 0.96084 0.93162 0.91305 0.96016 0.89313 0.95437 0.91525 0.91121 0.93017 0.92916 0.91107 0.91411 0.90505 0.91896 0.90885 0.91795 0.97026 0.92832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 11.35 21.45 0.24 -53.90 16 2 C 0.01 0.84 5.30 84.66 0.45 1.28 16 3 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -30.69 8.57 25.60 0.22 -30.47 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 9 C 0.05 2.82 2.26 -11.49 -0.03 2.79 16 10 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 11 C -0.10 -5.11 5.02 30.68 0.15 -4.96 16 12 C -0.11 -4.36 6.10 30.65 0.19 -4.17 16 13 C 0.07 2.29 5.30 86.33 0.46 2.74 16 14 N -0.54 -20.08 4.48 -896.35 -4.01 -24.09 16 15 C 0.06 1.88 4.01 86.31 0.35 2.23 16 16 C -0.08 -2.04 2.87 -10.07 -0.03 -2.07 16 17 C -0.11 -2.65 6.19 31.67 0.20 -2.46 16 18 C -0.12 -2.35 6.91 31.89 0.22 -2.13 16 19 C -0.12 -2.06 6.83 31.67 0.22 -1.85 16 20 C -0.12 -2.22 6.46 31.32 0.20 -2.02 16 21 C 0.08 3.63 4.68 86.33 0.40 4.03 16 22 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 23 H 0.06 3.23 6.15 -2.39 -0.01 3.21 16 24 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 2.58 6.11 -2.39 -0.01 2.57 16 29 H 0.03 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.07 1.99 7.85 -2.39 -0.02 1.97 16 31 H 0.07 1.71 6.21 -2.39 -0.01 1.69 16 32 H 0.05 1.45 7.76 -2.39 -0.02 1.43 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.20 7.67 -2.39 -0.02 1.18 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.05 2.35 8.02 -2.38 -0.02 2.33 16 Total: -1.00 -60.79 308.84 2.21 -58.58 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.96 Total: 10.03 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 3.00 Total: -37.03 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -3.77 Total: -77.99 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -60.79 2.21 -58.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397708252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.961 kcal (2) G-P(sol) polarization free energy of solvation -60.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds