Wall clock time and date at job start Sun Mar 29 2020 21:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00028 * 2 1 4 4 H 1.48494 * 109.47038 * 269.99949 * 3 2 1 5 5 H 1.48497 * 109.47028 * 149.99617 * 3 2 1 6 6 H 1.48502 * 109.46777 * 29.99854 * 3 2 1 7 7 C 1.37871 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00215 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99711 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.50114 * 60.00709 * 9 7 2 11 11 C 1.53114 * 109.50310 * 299.92458 * 9 7 2 12 12 C 1.53126 * 109.15627 * 182.44328 * 11 9 7 13 13 C 1.53035 * 109.30950 * 57.59669 * 12 11 9 14 14 N 1.46845 * 109.52530 * 300.83881 * 13 12 11 15 15 C 1.46900 * 111.00343 * 185.83977 * 14 13 12 16 16 C 1.53004 * 109.47124 * 169.83835 * 15 14 13 17 17 C 1.54263 * 110.03748 * 294.31779 * 16 15 14 18 18 C 1.54963 * 104.16141 * 217.13685 * 17 16 15 19 19 C 1.54883 * 102.77740 * 37.88389 * 18 17 16 20 20 C 1.53868 * 110.03262 * 177.09597 * 16 15 14 21 21 C 1.46847 * 111.19601 * 61.74123 * 14 13 12 22 22 H 0.96993 * 120.00166 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.52196 * 302.30421 * 11 9 7 24 24 H 1.08995 * 109.52257 * 62.50063 * 11 9 7 25 25 H 1.08995 * 109.47021 * 297.65613 * 12 11 9 26 26 H 1.09000 * 109.50277 * 177.55580 * 12 11 9 27 27 H 1.09000 * 109.46351 * 180.82329 * 13 12 11 28 28 H 1.09000 * 109.45726 * 60.85413 * 13 12 11 29 29 H 1.08997 * 109.47075 * 289.84324 * 15 14 13 30 30 H 1.09003 * 109.46921 * 49.84402 * 15 14 13 31 31 H 1.09005 * 110.01276 * 55.71003 * 16 15 14 32 32 H 1.09001 * 110.48623 * 335.78611 * 17 16 15 33 33 H 1.09001 * 110.48497 * 98.42352 * 17 16 15 34 34 H 1.09001 * 110.71878 * 279.57378 * 18 17 16 35 35 H 1.08993 * 110.92064 * 156.29613 * 18 17 16 36 36 H 1.08995 * 110.48780 * 203.40559 * 19 18 17 37 37 H 1.09005 * 110.48409 * 80.75938 * 19 18 17 38 38 H 1.08993 * 110.03872 * 238.57698 * 20 16 15 39 39 H 1.09009 * 110.03292 * 0.02562 * 20 16 15 40 40 H 1.09002 * 109.46393 * 178.24097 * 21 14 13 41 41 H 1.09000 * 109.45972 * 58.28284 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 3.5466 1.4401 0.7001 6 1 1.4465 2.6526 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8750 -0.6803 0.8910 11 6 4.0232 -0.4743 -1.2497 12 6 5.5532 -0.5322 -1.2722 13 6 6.0049 -1.9940 -1.2369 14 7 5.4908 -2.6373 -0.0211 15 6 6.0186 -4.0012 0.1164 16 6 5.6719 -4.5448 1.5040 17 6 6.4097 -3.7337 2.5890 18 6 6.7949 -4.7898 3.6556 19 6 7.1715 -6.0224 2.7968 20 6 6.1555 -5.9996 1.6361 21 6 4.0224 -2.6366 -0.0004 22 1 -0.4850 0.8400 -0.0004 23 1 3.6276 -0.9644 -2.1393 24 1 3.6977 0.5657 -1.2303 25 1 5.9494 -0.0078 -0.4028 26 1 5.9219 -0.0593 -2.1825 27 1 7.0940 -2.0377 -1.2380 28 1 5.6197 -2.5143 -2.1138 29 1 5.5746 -4.6412 -0.6460 30 1 7.1015 -3.9859 -0.0076 31 1 4.5952 -4.4931 1.6665 32 1 7.3032 -3.2667 2.1747 33 1 5.7486 -2.9806 3.0179 34 1 5.9454 -5.0136 4.3010 35 1 7.6481 -4.4544 4.2450 36 1 7.0664 -6.9387 3.3777 37 1 8.1882 -5.9256 2.4157 38 1 5.3140 -6.6537 1.8636 39 1 6.6377 -6.3182 0.7118 40 1 3.6716 -3.1472 0.8965 41 1 3.6466 -3.1542 -0.8830 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397708254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:01 Heat of formation + Delta-G solvation = -21.469928 kcal Electronic energy + Delta-G solvation = -17774.470529 eV Core-core repulsion = 15266.888749 eV Total energy + Delta-G solvation = -2507.581780 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.02124 -37.41797 -33.75528 -32.13120 -30.29903 -29.16905 -28.47847 -25.13422 -24.63177 -22.07384 -21.13830 -20.53539 -19.23563 -18.75236 -16.69458 -16.05967 -15.13206 -14.98996 -14.41347 -14.18508 -13.78257 -13.35388 -13.17538 -12.90574 -12.61833 -12.42747 -12.21224 -11.58575 -11.17840 -11.06168 -11.02152 -10.86439 -10.77072 -10.55411 -10.49207 -10.41791 -10.29625 -9.98955 -9.82636 -9.56044 -9.04812 -8.88442 -8.47662 -7.73200 -6.03728 -4.02457 3.31004 3.42079 3.45912 4.34569 4.45703 4.76806 4.80264 4.89584 5.28066 5.29020 5.50104 5.52082 5.57240 5.65627 5.72738 5.73890 5.78233 5.82330 5.94516 5.96334 5.97480 6.05589 6.15406 6.21934 6.24804 6.33648 6.37836 6.39804 6.52277 6.55668 6.62056 6.71825 6.87419 6.88609 7.26204 7.47577 7.69960 7.70627 7.92389 8.56200 8.99678 9.59485 11.09661 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031249 B = 0.006529 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.825026 B = 4287.443194 C = 4623.167459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.263 1.263 6 H -0.299 1.299 7 C -0.513 4.513 8 H 0.071 0.929 9 C 0.020 3.980 10 H 0.035 0.965 11 C -0.122 4.122 12 C -0.119 4.119 13 C 0.064 3.936 14 N -0.540 5.540 15 C 0.065 3.935 16 C -0.091 4.091 17 C -0.103 4.103 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.120 4.120 21 C 0.076 3.924 22 H 0.263 0.737 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.818 -8.263 2.088 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.188 1.188 6 H -0.227 1.227 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.157 4.157 13 C -0.064 4.064 14 N -0.265 5.265 15 C -0.063 4.063 16 C -0.110 4.110 17 C -0.140 4.140 18 C -0.167 4.167 19 C -0.160 4.160 20 C -0.158 4.158 21 C -0.051 4.051 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 14.815 -7.886 2.479 16.965 hybrid contribution -0.002 0.479 -0.876 0.998 sum 14.813 -7.407 1.603 16.639 Atomic orbital electron populations 1.69903 1.06306 1.26878 1.51112 1.24982 0.94654 0.99033 0.94454 0.86822 0.80019 0.83474 0.77816 1.20779 1.18812 1.22672 1.21019 0.88883 0.94426 1.50780 0.91041 1.19156 0.95849 0.91306 0.93612 0.94731 1.22019 0.92676 1.00140 1.01141 1.21646 0.98068 0.95278 1.00694 1.21954 0.98304 0.95426 0.90696 1.61984 1.10271 1.16871 1.37350 1.22163 0.99059 0.89366 0.95709 1.21816 1.00885 0.93475 0.94846 1.22239 1.00106 0.96961 0.94716 1.22566 1.00595 0.95805 0.97730 1.22333 0.98877 0.98059 0.96756 1.22185 0.98616 0.96701 0.98321 1.22114 0.83934 0.99405 0.99658 0.92745 0.92664 0.93629 0.91871 0.92933 0.92087 0.95623 0.95674 0.91675 0.90517 0.91665 0.91362 0.91814 0.92115 0.92265 0.92026 0.92035 0.92116 0.91292 0.95857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 3 Si 0.89 22.40 24.35 -169.99 -4.14 18.26 16 4 H -0.28 -6.90 6.89 56.52 0.39 -6.51 16 5 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 6 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 7 C -0.51 -14.50 9.14 -34.44 -0.31 -14.82 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 10 H 0.03 0.87 7.20 -51.93 -0.37 0.50 16 11 C -0.12 -2.69 4.74 -26.61 -0.13 -2.81 16 12 C -0.12 -2.14 6.09 -26.65 -0.16 -2.30 16 13 C 0.06 1.05 5.46 -3.84 -0.02 1.03 16 14 N -0.54 -9.39 4.42 -234.67 -1.04 -10.43 16 15 C 0.07 0.94 4.01 -3.82 -0.02 0.93 16 16 C -0.09 -1.24 2.85 -89.50 -0.25 -1.49 16 17 C -0.10 -1.35 6.15 -25.03 -0.15 -1.51 16 18 C -0.13 -1.42 6.91 -24.70 -0.17 -1.59 16 19 C -0.12 -1.24 6.83 -25.08 -0.17 -1.41 16 20 C -0.12 -1.35 6.46 -25.62 -0.17 -1.51 16 21 C 0.08 1.55 4.52 -3.83 -0.02 1.54 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.05 1.06 3.35 -51.93 -0.17 0.89 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.86 8.01 -51.93 -0.42 0.45 16 28 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.06 0.86 7.90 -51.93 -0.41 0.45 16 31 H 0.08 1.18 6.29 -51.93 -0.33 0.85 16 32 H 0.06 0.87 7.79 -51.93 -0.40 0.46 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.64 7.67 -51.92 -0.40 0.24 16 40 H 0.07 1.42 6.15 -51.93 -0.32 1.10 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -29.49 302.07 -9.19 -38.68 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.49 Total: -2.19 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -1.84 Total: -21.70 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.26 Total: -37.59 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.14 Total: 18.26 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.49 -9.19 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397708254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.205 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds