Wall clock time and date at job start Sun Mar 29 2020 21:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00028 * 2 1 4 4 H 1.48494 * 109.47038 * 269.99949 * 3 2 1 5 5 H 1.48497 * 109.47028 * 149.99617 * 3 2 1 6 6 H 1.48502 * 109.46777 * 29.99854 * 3 2 1 7 7 C 1.37871 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00215 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99711 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.50114 * 60.00709 * 9 7 2 11 11 C 1.53114 * 109.50310 * 299.92458 * 9 7 2 12 12 C 1.53126 * 109.15627 * 182.44328 * 11 9 7 13 13 C 1.53035 * 109.30950 * 57.59669 * 12 11 9 14 14 N 1.46845 * 109.52530 * 300.83881 * 13 12 11 15 15 C 1.46900 * 111.00343 * 185.83977 * 14 13 12 16 16 C 1.53004 * 109.47124 * 169.83835 * 15 14 13 17 17 C 1.54263 * 110.03748 * 294.31779 * 16 15 14 18 18 C 1.54963 * 104.16141 * 217.13685 * 17 16 15 19 19 C 1.54883 * 102.77740 * 37.88389 * 18 17 16 20 20 C 1.53868 * 110.03262 * 177.09597 * 16 15 14 21 21 C 1.46847 * 111.19601 * 61.74123 * 14 13 12 22 22 H 0.96993 * 120.00166 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.52196 * 302.30421 * 11 9 7 24 24 H 1.08995 * 109.52257 * 62.50063 * 11 9 7 25 25 H 1.08995 * 109.47021 * 297.65613 * 12 11 9 26 26 H 1.09000 * 109.50277 * 177.55580 * 12 11 9 27 27 H 1.09000 * 109.46351 * 180.82329 * 13 12 11 28 28 H 1.09000 * 109.45726 * 60.85413 * 13 12 11 29 29 H 1.08997 * 109.47075 * 289.84324 * 15 14 13 30 30 H 1.09003 * 109.46921 * 49.84402 * 15 14 13 31 31 H 1.09005 * 110.01276 * 55.71003 * 16 15 14 32 32 H 1.09001 * 110.48623 * 335.78611 * 17 16 15 33 33 H 1.09001 * 110.48497 * 98.42352 * 17 16 15 34 34 H 1.09001 * 110.71878 * 279.57378 * 18 17 16 35 35 H 1.08993 * 110.92064 * 156.29613 * 18 17 16 36 36 H 1.08995 * 110.48780 * 203.40559 * 19 18 17 37 37 H 1.09005 * 110.48409 * 80.75938 * 19 18 17 38 38 H 1.08993 * 110.03872 * 238.57698 * 20 16 15 39 39 H 1.09009 * 110.03292 * 0.02562 * 20 16 15 40 40 H 1.09002 * 109.46393 * 178.24097 * 21 14 13 41 41 H 1.09000 * 109.45972 * 58.28284 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 3.5466 1.4401 0.7001 6 1 1.4465 2.6526 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8750 -0.6803 0.8910 11 6 4.0232 -0.4743 -1.2497 12 6 5.5532 -0.5322 -1.2722 13 6 6.0049 -1.9940 -1.2369 14 7 5.4908 -2.6373 -0.0211 15 6 6.0186 -4.0012 0.1164 16 6 5.6719 -4.5448 1.5040 17 6 6.4097 -3.7337 2.5890 18 6 6.7949 -4.7898 3.6556 19 6 7.1715 -6.0224 2.7968 20 6 6.1555 -5.9996 1.6361 21 6 4.0224 -2.6366 -0.0004 22 1 -0.4850 0.8400 -0.0004 23 1 3.6276 -0.9644 -2.1393 24 1 3.6977 0.5657 -1.2303 25 1 5.9494 -0.0078 -0.4028 26 1 5.9219 -0.0593 -2.1825 27 1 7.0940 -2.0377 -1.2380 28 1 5.6197 -2.5143 -2.1138 29 1 5.5746 -4.6412 -0.6460 30 1 7.1015 -3.9859 -0.0076 31 1 4.5952 -4.4931 1.6665 32 1 7.3032 -3.2667 2.1747 33 1 5.7486 -2.9806 3.0179 34 1 5.9454 -5.0136 4.3010 35 1 7.6481 -4.4544 4.2450 36 1 7.0664 -6.9387 3.3777 37 1 8.1882 -5.9256 2.4157 38 1 5.3140 -6.6537 1.8636 39 1 6.6377 -6.3182 0.7118 40 1 3.6716 -3.1472 0.8965 41 1 3.6466 -3.1542 -0.8830 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397708254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:00 Heat of formation + Delta-G solvation = -39.313319 kcal Electronic energy + Delta-G solvation = -17775.244276 eV Core-core repulsion = 15266.888749 eV Total energy + Delta-G solvation = -2508.355528 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.34529 -38.63628 -35.50727 -33.92539 -32.06362 -30.32857 -29.42150 -27.02964 -26.03531 -23.44834 -22.84852 -21.44999 -20.48442 -20.21282 -18.82208 -17.45659 -16.55248 -16.12618 -15.90992 -15.57950 -15.34191 -14.91281 -14.69325 -14.19271 -14.12577 -13.94085 -13.74068 -12.95642 -12.88259 -12.71564 -12.17038 -11.98546 -11.90446 -11.86664 -11.79828 -11.71652 -11.56523 -11.49438 -11.39166 -11.13234 -10.93296 -10.79869 -10.56960 -9.13680 -8.31389 -6.34845 1.28810 1.35333 1.46803 2.32107 3.04021 3.04783 3.81117 3.83722 3.88530 4.03935 4.14805 4.22297 4.38161 4.48211 4.53152 4.63365 4.66585 4.69818 4.71981 4.81499 4.84384 4.89844 4.93041 4.96523 5.03149 5.06506 5.13342 5.16941 5.20315 5.26219 5.33320 5.43733 5.51401 5.54351 5.62029 5.63983 5.73385 6.18436 6.32084 6.38580 6.72594 7.30906 8.85701 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031249 B = 0.006529 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.825026 B = 4287.443194 C = 4623.167459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.248 1.248 6 H -0.299 1.299 7 C -0.520 4.520 8 H 0.030 0.970 9 C 0.021 3.979 10 H 0.023 0.977 11 C -0.123 4.123 12 C -0.113 4.113 13 C 0.062 3.938 14 N -0.544 5.544 15 C 0.067 3.933 16 C -0.094 4.094 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.117 4.117 20 C -0.117 4.117 21 C 0.090 3.910 22 H 0.265 0.735 23 H 0.046 0.954 24 H 0.034 0.966 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.299 -8.265 1.751 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.172 1.172 6 H -0.227 1.227 7 C -0.558 4.558 8 H 0.048 0.952 9 C 0.001 3.999 10 H 0.041 0.959 11 C -0.160 4.160 12 C -0.151 4.151 13 C -0.065 4.065 14 N -0.268 5.268 15 C -0.060 4.060 16 C -0.113 4.113 17 C -0.140 4.140 18 C -0.164 4.164 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.038 4.038 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 18.322 -7.908 2.138 20.070 hybrid contribution -1.152 0.388 -0.756 1.432 sum 17.169 -7.520 1.382 18.795 Atomic orbital electron populations 1.70051 1.08197 1.28010 1.52903 1.25849 0.95405 1.02990 0.94143 0.85777 0.79061 0.78553 0.78654 1.19230 1.17229 1.22659 1.21345 0.91587 0.92891 1.50001 0.95184 1.19062 0.92792 0.93702 0.94306 0.95858 1.21921 0.96143 0.98732 0.99226 1.21623 0.94403 0.96805 1.02277 1.22066 1.00260 0.94169 0.90034 1.61952 1.07609 1.18996 1.38291 1.22258 1.00224 0.87568 0.95978 1.21814 0.99302 0.95421 0.94751 1.22199 0.99533 0.96969 0.95261 1.22553 1.00947 0.95606 0.97339 1.22321 0.99006 0.98020 0.96051 1.22160 0.99063 0.94707 0.99564 1.21763 0.86577 0.96896 0.98530 0.92562 0.93522 0.94737 0.91814 0.89917 0.88557 0.95544 0.95769 0.89136 0.93409 0.91235 0.93913 0.92343 0.90742 0.90936 0.90749 0.92178 0.90921 0.92432 0.97255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.91 13.96 21.45 0.30 -60.61 16 2 C 0.01 0.77 5.45 84.65 0.46 1.23 16 3 Si 0.95 46.52 24.35 68.60 1.67 48.19 16 4 H -0.27 -12.32 6.89 99.48 0.69 -11.63 16 5 H -0.25 -11.42 6.53 99.48 0.65 -10.77 16 6 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 7 C -0.52 -30.64 9.14 25.60 0.23 -30.41 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 9 C 0.02 0.99 1.85 -11.49 -0.02 0.97 16 10 H 0.02 1.17 7.20 -2.39 -0.02 1.16 16 11 C -0.12 -5.24 4.74 30.67 0.15 -5.10 16 12 C -0.11 -3.69 6.09 30.65 0.19 -3.51 16 13 C 0.06 1.83 5.46 86.33 0.47 2.30 16 14 N -0.54 -18.00 4.42 -896.36 -3.97 -21.96 16 15 C 0.07 1.79 4.01 86.30 0.35 2.14 16 16 C -0.09 -2.46 2.85 -10.07 -0.03 -2.49 16 17 C -0.10 -2.56 6.15 31.69 0.19 -2.37 16 18 C -0.13 -2.54 6.91 31.91 0.22 -2.32 16 19 C -0.12 -2.00 6.83 31.67 0.22 -1.79 16 20 C -0.12 -2.37 6.46 31.32 0.20 -2.17 16 21 C 0.09 3.76 4.52 86.33 0.39 4.15 16 22 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.03 1.54 3.35 -2.39 -0.01 1.53 16 25 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.10 2.23 8.01 -2.39 -0.02 2.21 16 28 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.02 0.66 8.12 -2.39 -0.02 0.64 16 30 H 0.09 2.01 7.90 -2.39 -0.02 1.99 16 31 H 0.05 1.51 6.29 -2.38 -0.02 1.50 16 32 H 0.07 1.68 7.79 -2.39 -0.02 1.66 16 33 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.31 7.67 -2.38 -0.02 1.30 16 40 H 0.06 2.49 6.15 -2.39 -0.01 2.48 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -65.74 302.07 1.91 -63.83 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.89 Total: 9.91 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 3.02 Total: -39.36 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -3.67 Total: -82.57 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.67 Total: 48.19 kcal Total: -65.74 1.91 -63.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397708254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.520 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds