Wall clock time and date at job start Sun Mar 29 2020 22:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50694 * 120.00186 * 2 1 4 4 C 1.31004 * 119.99677 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00257 * 353.78117 * 4 2 1 6 6 N 1.46898 * 109.47600 * 235.80083 * 5 4 2 7 7 C 1.46847 * 111.00015 * 45.78464 * 6 5 4 8 8 C 1.53037 * 109.52268 * 185.84035 * 7 6 5 9 9 C 1.53116 * 109.27778 * 300.82510 * 8 7 6 10 10 C 1.53005 * 109.57246 * 177.58741 * 9 8 7 11 11 C 1.50701 * 109.46836 * 65.28799 * 10 9 8 12 12 H 1.08002 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.37886 * 120.00012 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99793 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99777 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47073 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46969 * 119.99817 * 15 13 11 18 18 H 1.48499 * 109.46501 * 239.99692 * 15 13 11 19 19 C 1.53116 * 109.16238 * 57.65427 * 9 8 7 20 20 C 1.46840 * 110.99917 * 170.00094 * 6 5 4 21 21 H 1.09003 * 109.46803 * 265.02431 * 1 2 3 22 22 H 1.09001 * 109.47114 * 25.01961 * 1 2 3 23 23 H 1.08990 * 109.47599 * 145.02102 * 1 2 3 24 24 H 1.09001 * 109.47314 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47302 * 299.99922 * 3 2 1 26 26 H 1.09003 * 109.47134 * 60.00686 * 3 2 1 27 27 H 1.08004 * 119.99760 * 173.78664 * 4 2 1 28 28 H 1.09005 * 109.46919 * 355.80195 * 5 4 2 29 29 H 1.09002 * 109.47050 * 115.79469 * 5 4 2 30 30 H 1.09000 * 109.46662 * 305.86176 * 7 6 5 31 31 H 1.09003 * 109.45880 * 65.83133 * 7 6 5 32 32 H 1.09000 * 109.50500 * 180.88133 * 8 7 6 33 33 H 1.09002 * 109.50162 * 60.76660 * 8 7 6 34 34 H 1.08994 * 109.52530 * 297.74736 * 9 8 7 35 35 H 1.08996 * 109.47242 * 185.28251 * 10 9 8 36 36 H 1.08996 * 109.47409 * 305.28648 * 10 9 8 37 37 H 0.96997 * 120.00367 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.50566 * 182.39763 * 19 9 8 39 39 H 1.09007 * 109.50204 * 62.28434 * 19 9 8 40 40 H 1.08994 * 109.46587 * 294.16744 * 20 6 5 41 41 H 1.09002 * 109.46887 * 54.15424 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1619 -1.1346 -0.0005 5 6 1.4151 -2.4359 0.1403 6 7 1.9520 -3.1876 1.2824 7 6 2.1205 -2.3171 2.4530 8 6 2.8143 -3.0953 3.5733 9 6 1.9672 -4.3169 3.9400 10 6 2.6838 -5.1328 5.0179 11 6 2.7718 -4.3226 6.2856 12 1 2.3584 -3.3255 6.3191 13 6 3.3811 -4.8541 7.4025 14 7 3.8850 -6.0682 7.3616 15 14 3.4908 -3.8496 8.9737 16 1 2.8535 -2.5255 8.7601 17 1 2.7896 -4.5661 10.0692 18 1 4.9171 -3.6587 9.3404 19 6 1.7661 -5.1818 2.6927 20 6 1.1027 -4.3432 1.5979 21 1 -0.3633 -0.0891 1.0238 22 1 -0.3633 0.9312 -0.4346 23 1 -0.3634 -0.8419 -0.5891 24 1 3.3322 1.1058 -0.0005 25 1 1.9972 1.8766 -0.8900 26 1 1.9973 1.8766 0.8901 27 1 3.2372 -1.1373 -0.1017 28 1 0.3571 -2.2316 0.3048 29 1 1.5344 -3.0236 -0.7700 30 1 2.7282 -1.4545 2.1797 31 1 1.1433 -1.9784 2.7974 32 1 2.9252 -2.4536 4.4475 33 1 3.7973 -3.4225 3.2344 34 1 0.9981 -3.9886 4.3157 35 1 2.1263 -6.0493 5.2105 36 1 3.6881 -5.3833 4.6763 37 1 4.3133 -6.4423 8.1474 38 1 1.1282 -6.0310 2.9376 39 1 2.7326 -5.5419 2.3399 40 1 0.1304 -3.9951 1.9463 41 1 0.9712 -4.9524 0.7035 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399303253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:08 Heat of formation + Delta-G solvation = -10.051292 kcal Electronic energy + Delta-G solvation = -17163.872175 eV Core-core repulsion = 14656.785544 eV Total energy + Delta-G solvation = -2507.086631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.98007 -36.62126 -34.10442 -32.19935 -30.34326 -29.23356 -27.93006 -27.01236 -24.36883 -22.91960 -22.18785 -20.50506 -18.85444 -17.85017 -16.23121 -15.87349 -14.97357 -14.81203 -14.44262 -14.02800 -13.88127 -13.52446 -13.39842 -12.84241 -12.52569 -12.30497 -12.14632 -12.00188 -11.79925 -11.69519 -11.49636 -11.06376 -10.87472 -10.73614 -10.57782 -10.54945 -10.21148 -9.87677 -9.48876 -9.00127 -8.83630 -8.71535 -8.29240 -7.97379 -5.94115 -3.95228 2.07837 3.33665 3.41223 3.45033 4.25623 4.50367 4.74049 4.85675 5.19027 5.32800 5.39473 5.41265 5.41925 5.43740 5.52245 5.59607 5.65120 5.71134 5.79454 5.83279 5.84768 5.94990 6.01516 6.06401 6.20630 6.31995 6.49530 6.58896 6.65397 6.72975 6.82694 7.04737 7.17033 7.25712 7.43731 7.48251 7.75085 7.92082 8.07232 8.50682 9.11630 9.68057 11.17353 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030863 B = 0.005122 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.016863 B = 5465.750731 C = 6080.656285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.141 4.141 3 C -0.114 4.114 4 C -0.150 4.150 5 C 0.078 3.922 6 N -0.532 5.532 7 C 0.058 3.942 8 C -0.100 4.100 9 C -0.081 4.081 10 C 0.027 3.973 11 C -0.513 4.513 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.112 4.112 20 C 0.059 3.941 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.113 0.887 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.023 0.977 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.014 0.986 36 H 0.017 0.983 37 H 0.258 0.742 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.027 0.973 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 10.068 -15.146 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.142 4.142 3 C -0.171 4.171 4 C -0.168 4.168 5 C -0.049 4.049 6 N -0.257 5.257 7 C -0.069 4.069 8 C -0.138 4.138 9 C -0.100 4.100 10 C -0.010 4.010 11 C -0.551 4.551 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.149 4.149 20 C -0.068 4.068 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.131 0.869 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.041 0.959 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.080 9.755 -15.167 18.735 hybrid contribution -0.649 0.756 1.177 1.542 sum -5.729 10.511 -13.990 18.413 Atomic orbital electron populations 1.20836 0.92697 1.01980 1.02012 1.21583 0.95675 0.95107 1.01835 1.20803 0.99556 0.94989 1.01720 1.22616 0.99957 0.93144 1.01090 1.21221 0.96063 0.92678 0.94914 1.62026 1.49049 1.08778 1.05866 1.22192 0.98847 0.95330 0.90559 1.21556 0.99005 0.97229 0.95996 1.21232 0.98653 0.95359 0.94765 1.19124 0.95307 0.94666 0.91856 1.21303 1.36468 1.00980 0.96341 0.92693 1.25017 0.95746 0.94953 0.98783 1.69973 1.39041 1.15121 1.29481 0.86606 0.77660 0.80398 0.83763 1.19818 1.21128 1.21086 1.21689 1.00682 0.97612 0.94959 1.22102 0.93847 0.92222 0.98655 0.91755 0.92180 0.91691 0.92016 0.92106 0.91601 0.86858 0.94300 0.90715 0.91258 0.95853 0.91056 0.91945 0.93164 0.96791 0.96501 0.93183 0.92177 0.91596 0.95526 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 8.94 36.01 0.32 -0.80 16 2 C -0.14 -1.49 6.05 -101.07 -0.61 -2.10 16 3 C -0.11 -1.03 10.09 36.00 0.36 -0.66 16 4 C -0.15 -1.77 7.13 -36.03 -0.26 -2.02 16 5 C 0.08 0.99 5.35 -4.98 -0.03 0.96 16 6 N -0.53 -8.15 4.80 -236.12 -1.13 -9.29 16 7 C 0.06 0.95 5.08 -3.83 -0.02 0.93 16 8 C -0.10 -1.96 5.15 -26.65 -0.14 -2.09 16 9 C -0.08 -1.71 2.20 -90.50 -0.20 -1.91 16 10 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 11 C -0.51 -14.51 8.45 -34.44 -0.29 -14.80 16 12 H 0.05 1.52 7.08 -52.49 -0.37 1.15 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 15 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 16 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 C -0.11 -2.00 5.38 -26.65 -0.14 -2.15 16 20 C 0.06 0.91 5.42 -3.84 -0.02 0.89 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 23 H 0.06 0.60 6.66 -51.93 -0.35 0.25 16 24 H 0.06 0.55 7.79 -51.93 -0.40 0.14 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.11 1.36 7.85 -52.48 -0.41 0.95 16 28 H 0.04 0.47 5.65 -51.93 -0.29 0.18 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.07 6.49 -51.93 -0.34 0.73 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.48 7.06 -51.93 -0.37 1.11 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -29.82 318.90 -9.43 -39.25 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -7.58 Total: -3.44 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: -1.24 Total: -21.66 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.40 Total: -35.80 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.82 -9.43 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399303253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.201 kcal (2) G-P(sol) polarization free energy of solvation -29.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds