Wall clock time and date at job start Sun Mar 29 2020 22:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50694 * 120.00186 * 2 1 4 4 C 1.31004 * 119.99677 * 180.02562 * 2 1 3 5 5 C 1.50699 * 120.00257 * 353.78117 * 4 2 1 6 6 N 1.46898 * 109.47600 * 235.80083 * 5 4 2 7 7 C 1.46847 * 111.00015 * 45.78464 * 6 5 4 8 8 C 1.53037 * 109.52268 * 185.84035 * 7 6 5 9 9 C 1.53116 * 109.27778 * 300.82510 * 8 7 6 10 10 C 1.53005 * 109.57246 * 177.58741 * 9 8 7 11 11 C 1.50701 * 109.46836 * 65.28799 * 10 9 8 12 12 H 1.08002 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.37886 * 120.00012 * 180.02562 * 11 10 9 14 14 N 1.31507 * 119.99793 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99777 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47073 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46969 * 119.99817 * 15 13 11 18 18 H 1.48499 * 109.46501 * 239.99692 * 15 13 11 19 19 C 1.53116 * 109.16238 * 57.65427 * 9 8 7 20 20 C 1.46840 * 110.99917 * 170.00094 * 6 5 4 21 21 H 1.09003 * 109.46803 * 265.02431 * 1 2 3 22 22 H 1.09001 * 109.47114 * 25.01961 * 1 2 3 23 23 H 1.08990 * 109.47599 * 145.02102 * 1 2 3 24 24 H 1.09001 * 109.47314 * 180.02562 * 3 2 1 25 25 H 1.08998 * 109.47302 * 299.99922 * 3 2 1 26 26 H 1.09003 * 109.47134 * 60.00686 * 3 2 1 27 27 H 1.08004 * 119.99760 * 173.78664 * 4 2 1 28 28 H 1.09005 * 109.46919 * 355.80195 * 5 4 2 29 29 H 1.09002 * 109.47050 * 115.79469 * 5 4 2 30 30 H 1.09000 * 109.46662 * 305.86176 * 7 6 5 31 31 H 1.09003 * 109.45880 * 65.83133 * 7 6 5 32 32 H 1.09000 * 109.50500 * 180.88133 * 8 7 6 33 33 H 1.09002 * 109.50162 * 60.76660 * 8 7 6 34 34 H 1.08994 * 109.52530 * 297.74736 * 9 8 7 35 35 H 1.08996 * 109.47242 * 185.28251 * 10 9 8 36 36 H 1.08996 * 109.47409 * 305.28648 * 10 9 8 37 37 H 0.96997 * 120.00367 * 180.02562 * 14 13 11 38 38 H 1.09000 * 109.50566 * 182.39763 * 19 9 8 39 39 H 1.09007 * 109.50204 * 62.28434 * 19 9 8 40 40 H 1.08994 * 109.46587 * 294.16744 * 20 6 5 41 41 H 1.09002 * 109.46887 * 54.15424 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1619 -1.1346 -0.0005 5 6 1.4151 -2.4359 0.1403 6 7 1.9520 -3.1876 1.2824 7 6 2.1205 -2.3171 2.4530 8 6 2.8143 -3.0953 3.5733 9 6 1.9672 -4.3169 3.9400 10 6 2.6838 -5.1328 5.0179 11 6 2.7718 -4.3226 6.2856 12 1 2.3584 -3.3255 6.3191 13 6 3.3811 -4.8541 7.4025 14 7 3.8850 -6.0682 7.3616 15 14 3.4908 -3.8496 8.9737 16 1 2.8535 -2.5255 8.7601 17 1 2.7896 -4.5661 10.0692 18 1 4.9171 -3.6587 9.3404 19 6 1.7661 -5.1818 2.6927 20 6 1.1027 -4.3432 1.5979 21 1 -0.3633 -0.0891 1.0238 22 1 -0.3633 0.9312 -0.4346 23 1 -0.3634 -0.8419 -0.5891 24 1 3.3322 1.1058 -0.0005 25 1 1.9972 1.8766 -0.8900 26 1 1.9973 1.8766 0.8901 27 1 3.2372 -1.1373 -0.1017 28 1 0.3571 -2.2316 0.3048 29 1 1.5344 -3.0236 -0.7700 30 1 2.7282 -1.4545 2.1797 31 1 1.1433 -1.9784 2.7974 32 1 2.9252 -2.4536 4.4475 33 1 3.7973 -3.4225 3.2344 34 1 0.9981 -3.9886 4.3157 35 1 2.1263 -6.0493 5.2105 36 1 3.6881 -5.3833 4.6763 37 1 4.3133 -6.4423 8.1474 38 1 1.1282 -6.0310 2.9376 39 1 2.7326 -5.5419 2.3399 40 1 0.1304 -3.9951 1.9463 41 1 0.9712 -4.9524 0.7035 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399303253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:08 Heat of formation + Delta-G solvation = -26.681188 kcal Electronic energy + Delta-G solvation = -17164.593302 eV Core-core repulsion = 14656.785544 eV Total energy + Delta-G solvation = -2507.807757 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26352 -37.71341 -35.71645 -34.09672 -31.74161 -30.63064 -28.79619 -28.40119 -25.95714 -24.37451 -23.57744 -22.06833 -20.43248 -18.71478 -18.41179 -17.08122 -16.50250 -16.06173 -15.78678 -15.21083 -15.06735 -14.82097 -14.69175 -14.39476 -13.86437 -13.66476 -13.32710 -13.20217 -13.08648 -12.91967 -12.75398 -12.59388 -12.49825 -12.20678 -12.16425 -11.98234 -11.81472 -11.54095 -11.26836 -10.87289 -10.69578 -10.52445 -9.58087 -9.15736 -8.17166 -6.26767 1.22854 1.39237 1.39532 1.52581 2.41873 3.09095 3.16244 3.87521 4.04253 4.05437 4.10593 4.12236 4.33976 4.42746 4.53339 4.56514 4.65423 4.69398 4.73063 4.76870 4.84487 4.87201 4.95428 4.96400 5.01325 5.10502 5.12511 5.16409 5.22129 5.38035 5.41567 5.45259 5.57755 5.77168 5.81150 5.88782 5.95792 6.22390 6.28200 6.33387 6.89338 7.41573 8.95091 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.030863 B = 0.005122 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.016863 B = 5465.750731 C = 6080.656285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.132 4.132 3 C -0.117 4.117 4 C -0.171 4.171 5 C 0.082 3.918 6 N -0.544 5.544 7 C 0.072 3.928 8 C -0.095 4.095 9 C -0.075 4.075 10 C 0.033 3.967 11 C -0.529 4.529 12 H 0.059 0.941 13 C -0.002 4.002 14 N -0.936 5.936 15 Si 0.961 3.039 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.107 4.107 20 C 0.066 3.934 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.046 0.954 35 H -0.013 1.013 36 H -0.012 1.012 37 H 0.262 0.738 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.032 0.968 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 11.917 -15.982 21.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.133 4.133 3 C -0.173 4.173 4 C -0.190 4.190 5 C -0.044 4.044 6 N -0.269 5.269 7 C -0.055 4.055 8 C -0.132 4.132 9 C -0.094 4.094 10 C -0.004 4.004 11 C -0.567 4.567 12 H 0.077 0.923 13 C -0.199 4.199 14 N -0.576 5.576 15 Si 0.786 3.214 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.145 4.145 20 C -0.061 4.061 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.125 0.875 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.043 0.957 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.005 0.995 36 H 0.006 0.994 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.050 0.950 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.112 11.615 -16.022 20.711 hybrid contribution -0.325 0.171 1.407 1.454 sum -6.437 11.786 -14.615 19.848 Atomic orbital electron populations 1.20884 0.91845 1.03086 1.01919 1.21871 0.96445 0.95358 0.99619 1.20861 0.99354 0.94443 1.02658 1.22547 0.99758 0.93265 1.03409 1.21238 0.96418 0.92911 0.93850 1.61978 1.49857 1.09030 1.06053 1.21967 0.98539 0.95142 0.89872 1.21432 0.98438 0.96586 0.96789 1.21087 0.97808 0.95802 0.94657 1.19013 0.93861 0.94243 0.93248 1.21673 1.36380 1.01314 0.97327 0.92289 1.25954 0.95249 0.96085 1.02611 1.70108 1.39878 1.16942 1.30717 0.85461 0.77893 0.79057 0.79035 1.18603 1.20459 1.20473 1.21604 1.00660 0.97737 0.94509 1.22031 0.93459 0.92178 0.98474 0.92222 0.90605 0.91287 0.92158 0.90567 0.91149 0.87453 0.93471 0.89709 0.90162 0.95748 0.92717 0.93381 0.93538 0.99509 0.99404 0.92930 0.91842 0.92656 0.94960 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.94 71.24 0.64 -1.32 16 2 C -0.13 -2.47 6.05 -16.49 -0.10 -2.57 16 3 C -0.12 -1.81 10.09 71.23 0.72 -1.10 16 4 C -0.17 -3.70 7.13 25.64 0.18 -3.52 16 5 C 0.08 1.87 5.35 85.56 0.46 2.33 16 6 N -0.54 -15.70 4.80 -900.94 -4.32 -20.03 16 7 C 0.07 2.28 5.08 86.33 0.44 2.72 16 8 C -0.09 -3.73 5.15 30.65 0.16 -3.57 16 9 C -0.07 -3.20 2.20 -10.71 -0.02 -3.23 16 10 C 0.03 1.82 4.45 29.85 0.13 1.95 16 11 C -0.53 -30.59 8.45 25.60 0.22 -30.37 16 12 H 0.06 3.29 7.08 -2.91 -0.02 3.27 16 13 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 14 N -0.94 -58.21 13.29 21.45 0.28 -57.92 16 15 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 C -0.11 -3.84 5.38 30.65 0.16 -3.67 16 20 C 0.07 1.90 5.42 86.33 0.47 2.36 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 23 H 0.07 1.07 6.66 -2.39 -0.02 1.05 16 24 H 0.06 0.95 7.79 -2.39 -0.02 0.94 16 25 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.11 2.43 7.85 -2.91 -0.02 2.41 16 28 H 0.05 1.01 5.65 -2.38 -0.01 1.00 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.08 2.37 6.49 -2.39 -0.02 2.35 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 2.30 7.06 -2.39 -0.02 2.28 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 36 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 2.16 8.12 -2.39 -0.02 2.14 16 Total: -1.00 -64.52 318.90 2.86 -61.66 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 0.95 Total: 8.77 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 3.91 Total: -39.62 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -4.04 Total: -77.95 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.52 2.86 -61.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399303253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.982 kcal (2) G-P(sol) polarization free energy of solvation -64.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds