Wall clock time and date at job start Sun Mar 29 2020 22:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47859 * 179.97438 * 5 4 3 7 7 C 1.46848 * 110.99510 * 294.21467 * 6 5 4 8 8 C 1.53048 * 109.52064 * 174.15537 * 7 6 5 9 9 C 1.53118 * 109.27745 * 59.17773 * 8 7 6 10 10 C 1.52997 * 109.57543 * 182.41065 * 9 8 7 11 11 C 1.50703 * 109.46888 * 294.71393 * 10 9 8 12 12 H 1.07994 * 120.00141 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00024 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00231 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99864 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47002 * 90.00116 * 15 13 11 17 17 H 1.48496 * 109.46922 * 210.00299 * 15 13 11 18 18 H 1.48498 * 109.47133 * 330.00207 * 15 13 11 19 19 C 1.53120 * 109.16026 * 302.34502 * 9 8 7 20 20 C 1.46844 * 111.00526 * 170.00090 * 6 5 4 21 21 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 23 23 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 25 25 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 26 26 H 1.09002 * 109.47153 * 299.99998 * 4 3 2 27 27 H 1.08998 * 109.47533 * 59.99628 * 4 3 2 28 28 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 30 30 H 1.08996 * 109.46339 * 294.16557 * 7 6 5 31 31 H 1.08994 * 109.46869 * 54.14232 * 7 6 5 32 32 H 1.08998 * 109.49998 * 299.23732 * 8 7 6 33 33 H 1.08994 * 109.50211 * 179.11499 * 8 7 6 34 34 H 1.09002 * 109.52451 * 62.24612 * 9 8 7 35 35 H 1.09003 * 109.47495 * 54.71055 * 10 9 8 36 36 H 1.08998 * 109.47327 * 174.71638 * 10 9 8 37 37 H 0.96998 * 120.00640 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.50479 * 297.71302 * 19 9 8 39 39 H 1.08998 * 109.50625 * 177.59615 * 19 9 8 40 40 H 1.09003 * 109.46077 * 305.85847 * 20 6 5 41 41 H 1.08995 * 109.45945 * 65.83669 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6578 1.1813 6 7 4.7328 2.6851 2.3162 7 6 4.0074 2.6949 3.5929 8 6 5.0041 2.5763 4.7483 9 6 5.9878 3.7483 4.6897 10 6 7.0241 3.6040 5.8059 11 6 6.3423 3.7319 7.1438 12 1 5.2764 3.8988 7.1930 13 6 7.0793 3.6357 8.3052 14 7 6.4843 3.7467 9.4727 15 14 8.9228 3.3462 8.2202 16 1 9.6274 4.6527 8.1750 17 1 9.3607 2.5888 9.4200 18 1 9.2457 2.5672 6.9978 19 6 6.6948 3.7435 3.3314 20 6 5.6491 3.8283 2.2172 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5401 -0.9353 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 2.6213 1.4026 -0.9314 25 1 1.3585 2.1317 0.0896 26 1 2.4772 1.2357 2.1130 27 1 3.7399 0.5067 1.0922 28 1 4.3582 2.7549 0.2499 29 1 3.0957 3.4846 1.2707 30 1 3.4512 3.6275 3.6875 31 1 3.3144 1.8542 3.6235 32 1 5.5511 1.6374 4.6621 33 1 4.4667 2.5994 5.6963 34 1 5.4456 4.6855 4.8147 35 1 7.5024 2.6272 5.7338 36 1 7.7771 4.3857 5.7058 37 1 7.0026 3.6787 10.2897 38 1 7.2684 2.8230 3.2229 39 1 7.3653 4.6004 3.2672 40 1 6.1484 3.8107 1.2484 41 1 5.0852 4.7555 2.3184 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399382172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:01 Heat of formation + Delta-G solvation = -8.397941 kcal Electronic energy + Delta-G solvation = -16840.272096 eV Core-core repulsion = 14333.257160 eV Total energy + Delta-G solvation = -2507.014936 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.91188 -36.28757 -34.46150 -32.43908 -31.03455 -30.32312 -28.30788 -25.51496 -23.31565 -22.85268 -21.06200 -20.33876 -19.94452 -18.95772 -16.68594 -15.96732 -15.58447 -14.76076 -14.46977 -14.23742 -14.07119 -13.61333 -13.33865 -12.91487 -12.80676 -12.46592 -12.18390 -11.79089 -11.72598 -11.51201 -11.37014 -10.97749 -10.78422 -10.73907 -10.67899 -10.44431 -10.11267 -9.66855 -9.54512 -9.51705 -9.20869 -8.96124 -8.48276 -8.07796 -5.99281 -3.96005 2.07836 3.34200 3.41664 3.46445 4.06858 4.50107 4.66638 4.80935 5.03170 5.17268 5.24998 5.33748 5.37745 5.39010 5.44327 5.56737 5.64650 5.67503 5.71898 5.76601 5.87866 5.94782 6.06557 6.09965 6.20547 6.26798 6.39090 6.43250 6.53303 6.57302 6.61707 6.90144 6.99943 7.08647 7.30836 7.35077 7.42359 7.56142 7.86428 8.60217 9.06045 9.64142 11.14199 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041009 B = 0.004279 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.617118 B = 6541.953704 C = 6928.523124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C -0.094 4.094 4 C -0.112 4.112 5 C 0.055 3.945 6 N -0.538 5.538 7 C 0.053 3.947 8 C -0.101 4.101 9 C -0.073 4.073 10 C -0.009 4.009 11 C -0.514 4.514 12 H 0.072 0.928 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.878 3.122 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.265 1.265 19 C -0.115 4.115 20 C 0.060 3.940 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.108 0.892 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.028 0.972 30 H 0.027 0.973 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.009 0.991 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -4.093 -19.015 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.132 4.132 4 C -0.150 4.150 5 C -0.073 4.073 6 N -0.263 5.263 7 C -0.074 4.074 8 C -0.139 4.139 9 C -0.092 4.092 10 C -0.046 4.046 11 C -0.551 4.551 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.546 5.546 15 Si 0.706 3.294 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.152 4.152 20 C -0.068 4.068 21 H 0.113 0.887 22 H 0.113 0.887 23 H 0.126 0.874 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.618 -4.513 -18.834 20.466 hybrid contribution 0.449 0.614 0.179 0.781 sum -6.168 -3.900 -18.655 20.032 Atomic orbital electron populations 1.23839 0.96015 1.01712 1.02169 1.22992 0.96004 0.98669 0.99000 1.20753 0.98195 0.95210 0.99028 1.21554 0.97502 0.98044 0.97929 1.22086 0.94252 0.96535 0.94396 1.61949 1.19206 1.43028 1.02106 1.22249 0.96154 0.99669 0.89338 1.21551 0.96754 0.99048 0.96502 1.21049 0.96943 0.97671 0.93508 1.19609 0.94536 0.96202 0.94255 1.21167 0.96389 1.48803 0.88789 0.90988 1.25035 0.98301 0.94834 0.95444 1.69914 1.36012 1.51240 0.97407 0.86797 0.86330 0.78623 0.77655 1.20456 1.21528 1.18972 1.21726 0.97097 1.01669 0.94749 1.22071 0.94591 0.90923 0.99208 0.88720 0.88666 0.87390 0.91056 0.91743 0.91613 0.90975 0.91248 0.95376 0.95484 0.91233 0.91961 0.90470 0.92521 0.96561 0.97254 0.92873 0.91642 0.92192 0.91689 0.95406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 14.32 29.02 0.42 -1.23 16 2 C -0.15 -1.29 9.52 -36.02 -0.34 -1.64 16 3 C -0.09 -0.82 5.66 -27.88 -0.16 -0.98 16 4 C -0.11 -1.18 5.13 -26.74 -0.14 -1.32 16 5 C 0.06 0.64 4.96 -3.83 -0.02 0.62 16 6 N -0.54 -7.77 4.66 -234.67 -1.09 -8.87 16 7 C 0.05 0.84 5.29 -3.83 -0.02 0.82 16 8 C -0.10 -1.91 5.15 -26.65 -0.14 -2.04 16 9 C -0.07 -1.46 2.20 -90.50 -0.20 -1.66 16 10 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 11 C -0.51 -14.61 9.00 -34.44 -0.31 -14.92 16 12 H 0.07 2.19 7.32 -52.49 -0.38 1.81 16 13 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 15 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 19 C -0.11 -1.92 5.38 -26.65 -0.14 -2.06 16 20 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 21 H 0.09 0.73 7.84 -52.48 -0.41 0.32 16 22 H 0.09 0.68 8.06 -52.49 -0.42 0.26 16 23 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 26 H 0.07 0.75 6.43 -51.93 -0.33 0.41 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.73 7.99 -51.93 -0.41 0.32 16 29 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 1.01 6.21 -51.93 -0.32 0.68 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.61 7.05 -51.93 -0.37 1.24 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 36 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.82 8.02 -51.93 -0.42 0.41 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 319.00 15.07 4.81 4.81 Total: -1.00 -30.02 319.00 -9.09 -39.11 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -7.64 Total: -2.96 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -1.27 Total: -22.08 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.32 Total: -36.26 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.02 -9.09 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399382172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.711 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds