Wall clock time and date at job start Sun Mar 29 2020 22:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47859 * 179.97438 * 5 4 3 7 7 C 1.46848 * 110.99510 * 294.21467 * 6 5 4 8 8 C 1.53048 * 109.52064 * 174.15537 * 7 6 5 9 9 C 1.53118 * 109.27745 * 59.17773 * 8 7 6 10 10 C 1.52997 * 109.57543 * 182.41065 * 9 8 7 11 11 C 1.50703 * 109.46888 * 294.71393 * 10 9 8 12 12 H 1.07994 * 120.00141 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00024 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00231 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99864 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47002 * 90.00116 * 15 13 11 17 17 H 1.48496 * 109.46922 * 210.00299 * 15 13 11 18 18 H 1.48498 * 109.47133 * 330.00207 * 15 13 11 19 19 C 1.53120 * 109.16026 * 302.34502 * 9 8 7 20 20 C 1.46844 * 111.00526 * 170.00090 * 6 5 4 21 21 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 23 23 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 25 25 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 26 26 H 1.09002 * 109.47153 * 299.99998 * 4 3 2 27 27 H 1.08998 * 109.47533 * 59.99628 * 4 3 2 28 28 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 30 30 H 1.08996 * 109.46339 * 294.16557 * 7 6 5 31 31 H 1.08994 * 109.46869 * 54.14232 * 7 6 5 32 32 H 1.08998 * 109.49998 * 299.23732 * 8 7 6 33 33 H 1.08994 * 109.50211 * 179.11499 * 8 7 6 34 34 H 1.09002 * 109.52451 * 62.24612 * 9 8 7 35 35 H 1.09003 * 109.47495 * 54.71055 * 10 9 8 36 36 H 1.08998 * 109.47327 * 174.71638 * 10 9 8 37 37 H 0.96998 * 120.00640 * 179.97438 * 14 13 11 38 38 H 1.09004 * 109.50479 * 297.71302 * 19 9 8 39 39 H 1.08998 * 109.50625 * 177.59615 * 19 9 8 40 40 H 1.09003 * 109.46077 * 305.85847 * 20 6 5 41 41 H 1.08995 * 109.45945 * 65.83669 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 3.8004 2.6578 1.1813 6 7 4.7328 2.6851 2.3162 7 6 4.0074 2.6949 3.5929 8 6 5.0041 2.5763 4.7483 9 6 5.9878 3.7483 4.6897 10 6 7.0241 3.6040 5.8059 11 6 6.3423 3.7319 7.1438 12 1 5.2764 3.8988 7.1930 13 6 7.0793 3.6357 8.3052 14 7 6.4843 3.7467 9.4727 15 14 8.9228 3.3462 8.2202 16 1 9.6274 4.6527 8.1750 17 1 9.3607 2.5888 9.4200 18 1 9.2457 2.5672 6.9978 19 6 6.6948 3.7435 3.3314 20 6 5.6491 3.8283 2.2172 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5401 -0.9353 0.0004 23 1 1.8500 -0.9353 0.0004 24 1 2.6213 1.4026 -0.9314 25 1 1.3585 2.1317 0.0896 26 1 2.4772 1.2357 2.1130 27 1 3.7399 0.5067 1.0922 28 1 4.3582 2.7549 0.2499 29 1 3.0957 3.4846 1.2707 30 1 3.4512 3.6275 3.6875 31 1 3.3144 1.8542 3.6235 32 1 5.5511 1.6374 4.6621 33 1 4.4667 2.5994 5.6963 34 1 5.4456 4.6855 4.8147 35 1 7.5024 2.6272 5.7338 36 1 7.7771 4.3857 5.7058 37 1 7.0026 3.6787 10.2897 38 1 7.2684 2.8230 3.2229 39 1 7.3653 4.6004 3.2672 40 1 6.1484 3.8107 1.2484 41 1 5.0852 4.7555 2.3184 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399382172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:01 Heat of formation + Delta-G solvation = -25.625966 kcal Electronic energy + Delta-G solvation = -16841.019159 eV Core-core repulsion = 14333.257160 eV Total energy + Delta-G solvation = -2507.761999 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.17216 -37.26780 -35.80225 -34.33383 -32.23846 -31.62108 -29.91270 -26.73561 -24.77937 -24.18993 -22.37941 -21.59630 -20.65930 -20.43595 -18.85888 -16.97692 -16.56032 -16.34315 -15.76494 -15.45994 -15.16715 -15.07934 -14.68994 -14.50280 -14.13272 -13.78031 -13.48149 -13.32532 -12.90121 -12.70111 -12.61802 -12.36939 -12.14267 -12.05816 -11.91818 -11.72110 -11.63557 -11.50881 -11.20754 -10.87254 -10.79558 -10.69482 -10.16869 -9.21269 -8.26417 -6.28714 1.35620 1.37785 1.43825 1.50025 2.37904 2.98759 3.09066 3.88479 3.96799 4.02782 4.07531 4.14194 4.31935 4.36486 4.45652 4.54970 4.57426 4.66435 4.68400 4.74448 4.82199 4.86090 4.93078 4.98662 5.05274 5.08904 5.13212 5.24209 5.28620 5.33107 5.40903 5.43876 5.52256 5.72137 5.74629 5.79468 5.93193 6.18953 6.27804 6.34422 6.78454 7.35064 8.90373 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.041009 B = 0.004279 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.617118 B = 6541.953704 C = 6928.523124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.088 4.088 4 C -0.107 4.107 5 C 0.057 3.943 6 N -0.546 5.546 7 C 0.064 3.936 8 C -0.097 4.097 9 C -0.072 4.072 10 C -0.005 4.005 11 C -0.520 4.520 12 H 0.033 0.967 13 C 0.001 3.999 14 N -0.954 5.954 15 Si 0.949 3.051 16 H -0.267 1.267 17 H -0.285 1.285 18 H -0.248 1.248 19 C -0.108 4.108 20 C 0.063 3.937 21 H 0.098 0.902 22 H 0.103 0.897 23 H 0.111 0.889 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.030 0.970 30 H 0.022 0.978 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.044 0.956 34 H 0.042 0.958 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.264 0.736 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 -4.399 -21.600 22.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.179 4.179 3 C -0.126 4.126 4 C -0.145 4.145 5 C -0.071 4.071 6 N -0.270 5.270 7 C -0.063 4.063 8 C -0.135 4.135 9 C -0.091 4.091 10 C -0.043 4.043 11 C -0.558 4.558 12 H 0.051 0.949 13 C -0.195 4.195 14 N -0.595 5.595 15 Si 0.772 3.228 16 H -0.192 1.192 17 H -0.211 1.211 18 H -0.171 1.171 19 C -0.146 4.146 20 C -0.065 4.065 21 H 0.116 0.884 22 H 0.122 0.878 23 H 0.129 0.871 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.577 -4.818 -21.447 22.678 hybrid contribution 0.014 0.714 1.007 1.235 sum -5.563 -4.104 -20.440 21.577 Atomic orbital electron populations 1.24004 0.96055 1.02372 1.01430 1.23088 0.96299 0.98872 0.99674 1.20697 0.97899 0.95328 0.98669 1.21486 0.97492 0.97339 0.98149 1.22168 0.94058 0.97075 0.93771 1.61940 1.19838 1.43164 1.02101 1.22048 0.95251 0.99970 0.89077 1.21427 0.97042 0.98379 0.96617 1.20979 0.96304 0.97279 0.94496 1.19566 0.95336 0.96095 0.93262 1.21478 0.95003 1.48043 0.91269 0.94900 1.26010 1.03913 0.94680 0.94905 1.70070 1.38237 1.52890 0.98342 0.85676 0.79582 0.79162 0.78331 1.19248 1.21135 1.17149 1.21644 0.97635 1.02180 0.93122 1.22067 0.94081 0.90894 0.99455 0.88377 0.87824 0.87060 0.89937 0.91550 0.92890 0.91404 0.89418 0.95150 0.95929 0.90102 0.92492 0.93769 0.93969 0.96573 0.96687 0.92679 0.91680 0.91038 0.88876 0.95399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.98 14.32 67.78 0.97 -2.01 16 2 C -0.16 -2.52 9.52 25.65 0.24 -2.28 16 3 C -0.09 -1.35 5.66 29.85 0.17 -1.18 16 4 C -0.11 -2.02 5.13 30.59 0.16 -1.86 16 5 C 0.06 1.16 4.96 86.30 0.43 1.58 16 6 N -0.55 -14.52 4.66 -896.37 -4.17 -18.70 16 7 C 0.06 1.98 5.29 86.33 0.46 2.43 16 8 C -0.10 -3.72 5.15 30.65 0.16 -3.57 16 9 C -0.07 -2.87 2.20 -10.71 -0.02 -2.90 16 10 C -0.01 -0.25 3.52 29.85 0.11 -0.15 16 11 C -0.52 -30.49 9.00 25.60 0.23 -30.26 16 12 H 0.03 2.12 7.32 -2.91 -0.02 2.10 16 13 C 0.00 0.06 5.47 84.66 0.46 0.52 16 14 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 15 Si 0.95 45.35 27.47 68.60 1.88 47.24 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 18 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 19 C -0.11 -3.38 5.38 30.65 0.16 -3.21 16 20 C 0.06 1.63 5.46 86.33 0.47 2.10 16 21 H 0.10 1.35 7.84 -2.91 -0.02 1.33 16 22 H 0.10 1.32 8.06 -2.91 -0.02 1.30 16 23 H 0.11 1.64 8.06 -2.91 -0.02 1.61 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 0.99 7.79 -2.39 -0.02 0.97 16 26 H 0.05 1.13 6.43 -2.39 -0.02 1.12 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.51 7.99 -2.39 -0.02 1.49 16 29 H 0.03 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 2.29 6.21 -2.39 -0.01 2.28 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.04 1.95 7.05 -2.39 -0.02 1.93 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 35 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 36 H 0.01 0.70 7.57 -2.39 -0.02 0.68 16 37 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 38 H 0.06 2.05 8.14 -2.38 -0.02 2.04 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.09 1.96 8.02 -2.39 -0.02 1.94 16 41 H 0.03 0.73 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -65.54 319.00 2.89 -62.65 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.89 Total: 10.31 kcal Atomic # 6 Polarization: -44.76 SS G_CDS: 3.99 Total: -40.77 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -3.87 Total: -79.43 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Total: -65.54 2.89 -62.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399382172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.021 kcal (2) G-P(sol) polarization free energy of solvation -65.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds