Wall clock time and date at job start Sun Mar 29 2020 22:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.52999 * 109.47084 * 94.99960 * 3 2 1 5 5 C 1.50706 * 120.00302 * 180.02562 * 2 1 3 6 6 N 1.46896 * 109.47236 * 94.99815 * 5 2 1 7 7 C 1.46843 * 111.00151 * 45.79136 * 6 5 2 8 8 C 1.53035 * 109.52159 * 185.83656 * 7 6 5 9 9 C 1.53116 * 109.28054 * 300.82027 * 8 7 6 10 10 C 1.53000 * 109.57683 * 177.58987 * 9 8 7 11 11 C 1.50701 * 109.46884 * 65.28464 * 10 9 8 12 12 H 1.07997 * 120.00150 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00014 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99932 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99974 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47132 * 89.99407 * 15 13 11 17 17 H 1.48495 * 109.47132 * 209.99760 * 15 13 11 18 18 H 1.48500 * 109.47006 * 330.00251 * 15 13 11 19 19 C 1.53120 * 109.15934 * 57.65931 * 9 8 7 20 20 C 1.46855 * 110.99753 * 170.00337 * 6 5 2 21 21 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 22 22 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 23 23 H 1.09000 * 109.47475 * 215.00242 * 3 2 1 24 24 H 1.09004 * 109.46846 * 335.00569 * 3 2 1 25 25 H 1.08995 * 109.47169 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.47195 * 300.00454 * 4 3 2 27 27 H 1.08998 * 109.47304 * 59.99866 * 4 3 2 28 28 H 1.08996 * 109.46892 * 215.00324 * 5 2 1 29 29 H 1.09001 * 109.46811 * 334.99425 * 5 2 1 30 30 H 1.08997 * 109.46294 * 305.85181 * 7 6 5 31 31 H 1.09000 * 109.45877 * 65.82513 * 7 6 5 32 32 H 1.09004 * 109.50579 * 180.87705 * 8 7 6 33 33 H 1.09002 * 109.50609 * 60.76664 * 8 7 6 34 34 H 1.09000 * 109.52757 * 297.74850 * 9 8 7 35 35 H 1.08995 * 109.47670 * 185.28812 * 10 9 8 36 36 H 1.09003 * 109.47425 * 305.29233 * 10 9 8 37 37 H 0.96998 * 119.99468 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.50229 * 182.40594 * 19 9 8 39 39 H 1.08998 * 109.50834 * 62.28426 * 19 9 8 40 40 H 1.09002 * 109.46060 * 294.17622 * 20 6 5 41 41 H 1.09006 * 109.45942 * 54.15282 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4274 1.6839 1.4370 5 6 2.0635 -1.3051 -0.0006 6 7 2.4129 -1.6682 -1.3804 7 6 2.9592 -0.5144 -2.1060 8 6 3.1749 -0.8889 -3.5741 9 6 4.1428 -2.0724 -3.6570 10 6 4.3166 -2.4911 -5.1183 11 6 4.9902 -1.3804 -5.8822 12 1 5.2670 -0.4674 -5.3761 13 6 5.2541 -1.5302 -7.2273 14 7 5.8424 -0.5611 -7.8939 15 14 4.7760 -3.1096 -8.1027 16 1 3.3981 -2.9796 -8.6411 17 1 5.7219 -3.3626 -9.2191 18 1 4.8277 -4.2422 -7.1436 19 6 3.5731 -3.2447 -2.8533 20 6 3.3460 -2.8020 -1.4060 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5400 -0.9354 -0.0045 23 1 2.9742 1.1989 -0.5895 24 1 1.4385 2.0855 -0.4342 25 1 2.9720 2.6280 1.4371 26 1 1.5167 1.7901 2.0265 27 1 3.0522 0.9035 1.8713 28 1 2.9742 -1.1991 0.5889 29 1 1.4386 -2.0856 0.4335 30 1 2.2594 0.3189 -2.0428 31 1 3.9111 -0.2236 -1.6617 32 1 3.5950 -0.0371 -4.1090 33 1 2.2211 -1.1666 -4.0228 34 1 5.1089 -1.7827 -3.2437 35 1 4.9303 -3.3905 -5.1681 36 1 3.3395 -2.6932 -5.5571 37 1 6.0277 -0.6664 -8.8401 38 1 4.2778 -4.0761 -2.8731 39 1 2.6256 -3.5595 -3.2905 40 1 4.2961 -2.5004 -0.9650 41 1 2.9269 -3.6302 -0.8345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399421111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:03 Heat of formation + Delta-G solvation = -2.341373 kcal Electronic energy + Delta-G solvation = -17346.186578 eV Core-core repulsion = 14839.434275 eV Total energy + Delta-G solvation = -2506.752304 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.19334 -36.50946 -33.92844 -32.14234 -30.59261 -30.37399 -28.53391 -25.57194 -24.03949 -23.02962 -22.24676 -20.38934 -18.95465 -18.38569 -16.68776 -15.63237 -15.29321 -14.98280 -14.44160 -14.24853 -13.75175 -13.59966 -13.24018 -12.87657 -12.76964 -12.60897 -12.22365 -12.05184 -11.75914 -11.44545 -11.35031 -11.04069 -10.78525 -10.70455 -10.63087 -10.52042 -10.06455 -9.72860 -9.52901 -9.25700 -9.14512 -8.94854 -8.48211 -8.03376 -5.99256 -3.95854 2.18032 3.34640 3.41767 3.46155 4.23899 4.50224 4.70117 4.77527 5.11152 5.26617 5.29032 5.34399 5.35605 5.42449 5.52205 5.55191 5.66994 5.74408 5.78551 5.80575 5.88241 5.94830 6.00160 6.08107 6.11264 6.22589 6.38190 6.52314 6.59167 6.61539 6.85265 6.89592 6.99835 7.08838 7.31667 7.33807 7.42874 7.55014 7.86553 8.60330 9.06091 9.64299 11.14252 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.036946 B = 0.005266 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.685879 B = 5315.518290 C = 5675.306262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.119 4.119 3 C -0.102 4.102 4 C -0.145 4.145 5 C 0.089 3.911 6 N -0.531 5.531 7 C 0.051 3.949 8 C -0.102 4.102 9 C -0.073 4.073 10 C -0.009 4.009 11 C -0.513 4.513 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.906 5.906 15 Si 0.878 3.122 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.114 4.114 20 C 0.058 3.942 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.027 0.973 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.014 0.986 36 H 0.012 0.988 37 H 0.261 0.739 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.311 -0.207 17.198 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.119 4.119 3 C -0.139 4.139 4 C -0.202 4.202 5 C -0.038 4.038 6 N -0.256 5.256 7 C -0.076 4.076 8 C -0.140 4.140 9 C -0.092 4.092 10 C -0.046 4.046 11 C -0.551 4.551 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.546 5.546 15 Si 0.706 3.294 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.191 1.191 19 C -0.152 4.152 20 C -0.069 4.069 21 H 0.113 0.887 22 H 0.116 0.884 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.030 0.970 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.653 -0.314 16.785 18.886 hybrid contribution 0.537 -0.532 -0.216 0.786 sum -8.116 -0.846 16.569 18.469 Atomic orbital electron populations 1.23650 0.95105 1.01650 1.01203 1.21593 0.95424 0.94955 0.99927 1.20927 1.00804 0.94549 0.97645 1.21721 1.01277 1.01068 0.96145 1.21124 0.98108 0.94284 0.90274 1.62140 1.43685 1.07327 1.12409 1.22435 0.97071 0.92538 0.95563 1.21577 0.99747 0.99474 0.93173 1.21053 0.97263 0.93635 0.97222 1.19610 0.96284 0.97029 0.91683 1.21162 1.37996 1.02048 0.93900 0.90993 1.25030 0.94762 0.96203 0.97575 1.69919 1.43117 1.32580 1.08973 0.86799 0.78418 0.84826 0.79368 1.20361 1.21556 1.19067 1.21720 1.01116 0.98661 0.93688 1.22104 0.93474 0.93087 0.98262 0.88707 0.88363 0.90412 0.91278 0.92592 0.92828 0.92823 0.94728 0.90687 0.90532 0.95477 0.90494 0.91996 0.92497 0.96817 0.97017 0.92880 0.92152 0.91636 0.95312 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 13.88 29.02 0.40 -1.49 16 2 C -0.12 -1.35 3.64 -101.06 -0.37 -1.72 16 3 C -0.10 -1.09 5.10 -27.88 -0.14 -1.23 16 4 C -0.14 -1.31 9.89 37.16 0.37 -0.94 16 5 C 0.09 1.09 5.46 -4.98 -0.03 1.06 16 6 N -0.53 -7.79 4.80 -236.11 -1.13 -8.92 16 7 C 0.05 0.81 3.97 -3.84 -0.02 0.79 16 8 C -0.10 -1.94 5.15 -26.65 -0.14 -2.08 16 9 C -0.07 -1.47 2.20 -90.50 -0.20 -1.67 16 10 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 11 C -0.51 -14.59 9.00 -34.44 -0.31 -14.90 16 12 H 0.07 2.19 7.33 -52.49 -0.38 1.80 16 13 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 14 N -0.91 -28.17 13.96 55.43 0.77 -27.39 16 15 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 19 C -0.11 -1.91 5.38 -26.65 -0.14 -2.06 16 20 C 0.06 0.85 5.42 -3.83 -0.02 0.83 16 21 H 0.09 0.90 7.99 -52.49 -0.42 0.48 16 22 H 0.10 1.01 7.99 -52.48 -0.42 0.59 16 23 H 0.08 0.91 5.58 -51.93 -0.29 0.62 16 24 H 0.07 0.70 7.99 -51.93 -0.41 0.28 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.03 0.41 8.08 -51.93 -0.42 0.00 16 29 H 0.07 0.85 7.99 -51.93 -0.41 0.44 16 30 H 0.08 1.14 5.27 -51.93 -0.27 0.87 16 31 H 0.03 0.43 7.58 -51.93 -0.39 0.04 16 32 H 0.08 1.61 7.06 -51.93 -0.37 1.24 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 36 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 314.26 15.07 4.74 4.74 Total: -1.00 -30.00 314.26 -8.61 -38.62 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.53 Total: -2.54 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -0.79 Total: -21.90 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.36 Total: -36.32 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.00 -8.61 -38.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399421111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.274 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds