Wall clock time and date at job start Sun Mar 29 2020 22:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 C 1.52999 * 109.47084 * 94.99960 * 3 2 1 5 5 C 1.50706 * 120.00302 * 180.02562 * 2 1 3 6 6 N 1.46896 * 109.47236 * 94.99815 * 5 2 1 7 7 C 1.46843 * 111.00151 * 45.79136 * 6 5 2 8 8 C 1.53035 * 109.52159 * 185.83656 * 7 6 5 9 9 C 1.53116 * 109.28054 * 300.82027 * 8 7 6 10 10 C 1.53000 * 109.57683 * 177.58987 * 9 8 7 11 11 C 1.50701 * 109.46884 * 65.28464 * 10 9 8 12 12 H 1.07997 * 120.00150 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00014 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99932 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99974 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47132 * 89.99407 * 15 13 11 17 17 H 1.48495 * 109.47132 * 209.99760 * 15 13 11 18 18 H 1.48500 * 109.47006 * 330.00251 * 15 13 11 19 19 C 1.53120 * 109.15934 * 57.65931 * 9 8 7 20 20 C 1.46855 * 110.99753 * 170.00337 * 6 5 2 21 21 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 22 22 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 23 23 H 1.09000 * 109.47475 * 215.00242 * 3 2 1 24 24 H 1.09004 * 109.46846 * 335.00569 * 3 2 1 25 25 H 1.08995 * 109.47169 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.47195 * 300.00454 * 4 3 2 27 27 H 1.08998 * 109.47304 * 59.99866 * 4 3 2 28 28 H 1.08996 * 109.46892 * 215.00324 * 5 2 1 29 29 H 1.09001 * 109.46811 * 334.99425 * 5 2 1 30 30 H 1.08997 * 109.46294 * 305.85181 * 7 6 5 31 31 H 1.09000 * 109.45877 * 65.82513 * 7 6 5 32 32 H 1.09004 * 109.50579 * 180.87705 * 8 7 6 33 33 H 1.09002 * 109.50609 * 60.76664 * 8 7 6 34 34 H 1.09000 * 109.52757 * 297.74850 * 9 8 7 35 35 H 1.08995 * 109.47670 * 185.28812 * 10 9 8 36 36 H 1.09003 * 109.47425 * 305.29233 * 10 9 8 37 37 H 0.96998 * 119.99468 * 180.02562 * 14 13 11 38 38 H 1.09004 * 109.50229 * 182.40594 * 19 9 8 39 39 H 1.08998 * 109.50834 * 62.28426 * 19 9 8 40 40 H 1.09002 * 109.46060 * 294.17622 * 20 6 5 41 41 H 1.09006 * 109.45942 * 54.15282 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4274 1.6839 1.4370 5 6 2.0635 -1.3051 -0.0006 6 7 2.4129 -1.6682 -1.3804 7 6 2.9592 -0.5144 -2.1060 8 6 3.1749 -0.8889 -3.5741 9 6 4.1428 -2.0724 -3.6570 10 6 4.3166 -2.4911 -5.1183 11 6 4.9902 -1.3804 -5.8822 12 1 5.2670 -0.4674 -5.3761 13 6 5.2541 -1.5302 -7.2273 14 7 5.8424 -0.5611 -7.8939 15 14 4.7760 -3.1096 -8.1027 16 1 3.3981 -2.9796 -8.6411 17 1 5.7219 -3.3626 -9.2191 18 1 4.8277 -4.2422 -7.1436 19 6 3.5731 -3.2447 -2.8533 20 6 3.3460 -2.8020 -1.4060 21 1 -0.5401 0.9353 -0.0004 22 1 -0.5400 -0.9354 -0.0045 23 1 2.9742 1.1989 -0.5895 24 1 1.4385 2.0855 -0.4342 25 1 2.9720 2.6280 1.4371 26 1 1.5167 1.7901 2.0265 27 1 3.0522 0.9035 1.8713 28 1 2.9742 -1.1991 0.5889 29 1 1.4386 -2.0856 0.4335 30 1 2.2594 0.3189 -2.0428 31 1 3.9111 -0.2236 -1.6617 32 1 3.5950 -0.0371 -4.1090 33 1 2.2211 -1.1666 -4.0228 34 1 5.1089 -1.7827 -3.2437 35 1 4.9303 -3.3905 -5.1681 36 1 3.3395 -2.6932 -5.5571 37 1 6.0277 -0.6664 -8.8401 38 1 4.2778 -4.0761 -2.8731 39 1 2.6256 -3.5595 -3.2905 40 1 4.2961 -2.5004 -0.9650 41 1 2.9269 -3.6302 -0.8345 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399421111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:03 Heat of formation + Delta-G solvation = -19.993203 kcal Electronic energy + Delta-G solvation = -17346.952019 eV Core-core repulsion = 14839.434275 eV Total energy + Delta-G solvation = -2507.517744 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40646 -37.66763 -35.48448 -34.03964 -31.71949 -31.55638 -30.14392 -26.96043 -24.96975 -24.62302 -23.48941 -21.99048 -20.47196 -19.27142 -18.86236 -16.84374 -16.36497 -16.19481 -16.00650 -15.50700 -15.11815 -14.88525 -14.77790 -14.38256 -13.91049 -13.84401 -13.59177 -13.42033 -13.03610 -12.74713 -12.58286 -12.46132 -12.35524 -12.12671 -11.92774 -11.70644 -11.61867 -11.47994 -11.28603 -10.82345 -10.82114 -10.70986 -10.05821 -9.17032 -8.26377 -6.28525 1.33325 1.36117 1.37287 1.49522 2.37868 3.08344 3.12708 3.81546 3.92937 4.02811 4.06043 4.06602 4.31586 4.40806 4.48406 4.50618 4.55299 4.65443 4.73084 4.75137 4.82556 4.83883 4.95674 4.99247 5.06037 5.08962 5.10899 5.16896 5.23198 5.33455 5.34145 5.40260 5.52488 5.70838 5.73998 5.75484 6.01004 6.17250 6.23810 6.34253 6.78496 7.35261 8.90435 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.036946 B = 0.005266 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.685879 B = 5315.518290 C = 5675.306262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.135 4.135 3 C -0.103 4.103 4 C -0.141 4.141 5 C 0.091 3.909 6 N -0.538 5.538 7 C 0.065 3.935 8 C -0.098 4.098 9 C -0.072 4.072 10 C -0.005 4.005 11 C -0.519 4.519 12 H 0.033 0.967 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.948 3.052 16 H -0.269 1.269 17 H -0.285 1.285 18 H -0.247 1.247 19 C -0.107 4.107 20 C 0.061 3.939 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.023 0.977 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.029 0.971 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 -1.966 18.673 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 C -0.140 4.140 4 C -0.198 4.198 5 C -0.036 4.036 6 N -0.263 5.263 7 C -0.062 4.062 8 C -0.136 4.136 9 C -0.090 4.090 10 C -0.043 4.043 11 C -0.557 4.557 12 H 0.051 0.949 13 C -0.194 4.194 14 N -0.595 5.595 15 Si 0.771 3.229 16 H -0.194 1.194 17 H -0.211 1.211 18 H -0.171 1.171 19 C -0.145 4.145 20 C -0.066 4.066 21 H 0.124 0.876 22 H 0.121 0.879 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.047 0.953 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.143 -2.077 18.288 21.015 hybrid contribution 1.002 0.110 -0.645 1.197 sum -9.141 -1.967 17.642 19.967 Atomic orbital electron populations 1.23818 0.94893 1.02464 0.99683 1.21633 0.95786 0.94825 1.01246 1.20910 1.00089 0.94568 0.98427 1.21690 1.01690 1.01252 0.95169 1.21176 0.98579 0.95182 0.88617 1.62123 1.43383 1.06727 1.14077 1.22216 0.97294 0.93445 0.93284 1.21456 0.98747 0.97926 0.95433 1.20979 0.97199 0.95578 0.95272 1.19568 0.95586 0.95366 0.93753 1.21468 1.37832 1.02042 0.94381 0.94872 1.25991 0.94787 1.00051 0.98547 1.70074 1.44853 1.35114 1.09494 0.85692 0.78352 0.80516 0.78295 1.19376 1.21083 1.17105 1.21635 1.01007 0.97217 0.94642 1.22095 0.93855 0.93873 0.96781 0.87631 0.87879 0.91974 0.90989 0.92057 0.92013 0.92971 0.94406 0.89244 0.89681 0.95865 0.93756 0.92631 0.93919 0.96545 0.96763 0.92687 0.91024 0.91642 0.95275 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 13.88 67.79 0.94 -2.25 16 2 C -0.13 -2.78 3.64 -16.48 -0.06 -2.84 16 3 C -0.10 -2.05 5.10 29.85 0.15 -1.89 16 4 C -0.14 -2.32 9.89 71.98 0.71 -1.60 16 5 C 0.09 1.99 5.46 85.56 0.47 2.46 16 6 N -0.54 -14.65 4.80 -900.92 -4.32 -18.98 16 7 C 0.07 2.02 3.97 86.33 0.34 2.37 16 8 C -0.10 -3.79 5.15 30.64 0.16 -3.63 16 9 C -0.07 -2.87 2.20 -10.71 -0.02 -2.89 16 10 C -0.01 -0.26 3.52 29.85 0.11 -0.15 16 11 C -0.52 -30.43 9.00 25.60 0.23 -30.20 16 12 H 0.03 2.13 7.33 -2.91 -0.02 2.11 16 13 C 0.00 0.14 5.47 84.66 0.46 0.60 16 14 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 15 Si 0.95 45.37 27.47 68.60 1.88 47.25 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 18 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 19 C -0.11 -3.38 5.38 30.65 0.16 -3.21 16 20 C 0.06 1.62 5.42 86.32 0.47 2.09 16 21 H 0.11 1.73 7.99 -2.91 -0.02 1.70 16 22 H 0.10 1.82 7.99 -2.91 -0.02 1.80 16 23 H 0.06 1.42 5.58 -2.39 -0.01 1.41 16 24 H 0.07 1.36 7.99 -2.38 -0.02 1.35 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.04 0.81 8.08 -2.39 -0.02 0.79 16 29 H 0.09 1.72 7.99 -2.39 -0.02 1.70 16 30 H 0.09 2.49 5.27 -2.39 -0.01 2.48 16 31 H 0.02 0.74 7.58 -2.39 -0.02 0.72 16 32 H 0.04 1.96 7.06 -2.38 -0.02 1.95 16 33 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.02 0.77 7.20 -2.39 -0.02 0.76 16 36 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 37 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 38 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.03 0.77 8.14 -2.39 -0.02 0.76 16 41 H 0.09 1.99 8.12 -2.38 -0.02 1.97 16 Total: -1.00 -65.29 314.26 2.88 -62.41 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.90 Total: 11.16 kcal Atomic # 6 Polarization: -45.28 SS G_CDS: 4.12 Total: -41.16 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -4.02 Total: -79.66 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.25 kcal Total: -65.29 2.88 -62.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399421111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.419 kcal (2) G-P(sol) polarization free energy of solvation -65.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds