Wall clock time and date at job start Sun Mar 29 2020 22:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.47033 * 2 1 4 4 C 1.52997 * 110.28438 * 60.67398 * 3 2 1 5 5 C 1.54257 * 110.31999 * 298.54880 * 3 2 1 6 6 C 1.54379 * 105.05801 * 240.99949 * 5 3 2 7 7 N 1.48564 * 104.59543 * 336.14975 * 6 5 3 8 8 C 1.46902 * 110.99812 * 159.03929 * 7 6 5 9 9 C 1.52995 * 109.47302 * 76.08077 * 8 7 6 10 10 C 1.50706 * 115.55014 * 269.74202 * 9 8 7 11 11 H 1.08006 * 119.99851 * 114.47843 * 10 9 8 12 12 C 1.37866 * 119.99786 * 294.48134 * 10 9 8 13 13 N 1.31517 * 120.00244 * 351.05104 * 12 10 9 14 14 Si 1.86804 * 119.99889 * 171.05434 * 12 10 9 15 15 H 1.48498 * 109.47077 * 59.99708 * 14 12 10 16 16 H 1.48504 * 109.47190 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46941 * 299.99877 * 14 12 10 18 18 C 1.52995 * 117.50140 * 124.03236 * 9 8 7 19 19 C 1.53002 * 60.00513 * 252.50931 * 18 9 8 20 20 C 1.48558 * 104.22175 * 39.48295 * 7 6 5 21 21 H 1.09009 * 109.47065 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47201 * 299.99648 * 1 2 3 23 23 H 1.08999 * 109.47807 * 60.00108 * 1 2 3 24 24 H 1.09000 * 109.47584 * 240.00264 * 2 1 3 25 25 H 1.08999 * 109.47807 * 119.99892 * 2 1 3 26 26 H 1.08996 * 109.47592 * 299.32463 * 4 3 2 27 27 H 1.09003 * 109.47187 * 59.32973 * 4 3 2 28 28 H 1.09000 * 109.46620 * 179.32716 * 4 3 2 29 29 H 1.08999 * 110.32418 * 122.10813 * 5 3 2 30 30 H 1.08994 * 110.41320 * 359.93620 * 5 3 2 31 31 H 1.09002 * 110.41734 * 217.37079 * 6 5 3 32 32 H 1.09000 * 110.51234 * 94.97488 * 6 5 3 33 33 H 1.08997 * 109.46983 * 196.07667 * 8 7 6 34 34 H 1.08998 * 109.47291 * 316.08087 * 8 7 6 35 35 H 0.97003 * 120.00009 * 185.03001 * 13 12 10 36 36 H 1.09001 * 117.50262 * 0.02562 * 18 9 8 37 37 H 1.09003 * 117.50178 * 145.02411 * 18 9 8 38 38 H 1.08991 * 117.50125 * 252.51187 * 19 18 9 39 39 H 1.09004 * 117.49753 * 107.48268 * 19 18 9 40 40 H 1.09000 * 110.41274 * 79.29484 * 20 7 6 41 41 H 1.08996 * 110.41358 * 201.73641 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5541 2.1770 1.2512 5 6 1.5667 2.1781 -1.2707 6 6 2.8625 2.5866 -2.0037 7 7 3.8965 2.6339 -0.9380 8 6 5.2455 2.5175 -1.5078 9 6 5.6442 3.8474 -2.1506 10 6 5.2847 3.9994 -3.6062 11 1 4.5598 4.7407 -3.9088 12 6 5.8811 3.1922 -4.5514 13 7 6.8863 2.4148 -4.2125 14 14 5.2615 3.2028 -6.3137 15 1 5.3923 4.5709 -6.8761 16 1 6.0652 2.2550 -7.1267 17 1 3.8349 2.7914 -6.3392 18 6 6.9400 4.5038 -1.6702 19 6 5.5879 5.1006 -1.2744 20 6 3.5818 1.4685 -0.0722 21 1 -0.3634 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3635 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 0.4643 2.1952 1.2617 27 1 1.9174 1.6606 2.1397 28 1 1.9344 3.1984 1.2435 29 1 0.9883 3.0624 -1.0031 30 1 0.9719 1.5124 -1.8960 31 1 2.7458 3.5677 -2.4640 32 1 3.1261 1.8434 -2.7563 33 1 5.9536 2.2694 -0.7172 34 1 5.2542 1.7318 -2.2632 35 1 7.3530 1.9020 -4.8908 36 1 7.5088 3.9880 -0.8965 37 1 7.5329 5.0457 -2.4070 38 1 5.2912 6.0348 -1.7509 39 1 5.2668 4.9774 -0.2400 40 1 3.9569 0.5489 -0.5214 41 1 4.0066 1.6077 0.9219 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399493620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:38 Heat of formation + Delta-G solvation = 11.917343 kcal Electronic energy + Delta-G solvation = -17937.788313 eV Core-core repulsion = 15431.654313 eV Total energy + Delta-G solvation = -2506.133999 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.18424 -36.52561 -33.93180 -31.94455 -29.91199 -29.07223 -26.61916 -25.45091 -24.22572 -22.68359 -20.95114 -20.47946 -18.96318 -18.11053 -16.11700 -15.23000 -15.01390 -14.57198 -14.17879 -13.78166 -13.56931 -13.38131 -12.98834 -12.68371 -12.25005 -11.94357 -11.79529 -11.60259 -11.22569 -11.02688 -10.90284 -10.83023 -10.77125 -10.47727 -10.42985 -10.19009 -10.10236 -10.04616 -9.97368 -9.22749 -8.75014 -8.39937 -8.01011 -7.50531 -5.99601 -4.02545 3.30215 3.35549 3.38263 4.41943 4.71484 4.85917 5.00405 5.14738 5.25579 5.39649 5.49241 5.53152 5.68680 5.79881 5.84103 5.90634 5.91977 6.02514 6.06880 6.18441 6.20276 6.23336 6.31474 6.44025 6.50857 6.52591 6.60738 6.67781 6.76298 6.84878 6.95593 6.99917 7.03550 7.21764 7.49311 7.59759 7.83304 7.99053 8.04639 8.54957 8.97367 9.59733 11.08389 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.007654 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.695243 B = 3657.323198 C = 4254.403978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.064 4.064 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.050 3.950 7 N -0.501 5.501 8 C 0.094 3.906 9 C 0.057 3.943 10 C -0.488 4.488 11 H 0.057 0.943 12 C 0.070 3.930 13 N -0.880 5.880 14 Si 0.883 3.117 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.179 4.179 19 C -0.191 4.191 20 C 0.038 3.962 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.035 0.965 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.652 -3.706 7.829 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.065 4.065 4 C -0.188 4.188 5 C -0.157 4.157 6 C -0.078 4.078 7 N -0.225 5.225 8 C -0.034 4.034 9 C 0.057 3.943 10 C -0.526 4.526 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.517 5.517 14 Si 0.711 3.289 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.202 1.202 18 C -0.217 4.217 19 C -0.228 4.228 20 C -0.090 4.090 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.546 -3.397 8.048 12.939 hybrid contribution 0.019 -0.836 -1.524 1.739 sum -9.527 -4.233 6.523 12.298 Atomic orbital electron populations 1.21850 0.96105 1.00971 1.02029 1.21590 0.95696 0.96020 1.01588 1.21282 0.95022 0.94399 0.95801 1.21833 1.00109 1.00750 0.96116 1.22544 0.98026 0.99409 0.95685 1.22945 0.89919 1.01740 0.93225 1.65395 1.03412 1.37043 1.16638 1.21775 0.87082 0.98868 0.95684 1.18693 0.95224 0.87848 0.92574 1.20462 1.24146 1.18346 0.89596 0.92484 1.24961 0.94859 0.95158 0.98287 1.69984 1.19996 1.28426 1.33335 0.86799 0.79091 0.77900 0.85097 1.20283 1.21378 1.20164 1.22731 0.91035 1.06001 1.01917 1.22692 1.02076 0.98841 0.99227 1.23171 0.93935 0.93475 0.98427 0.93354 0.92605 0.92484 0.92183 0.92307 0.93068 0.93379 0.91905 0.91653 0.92012 0.89856 0.94211 0.94090 0.93364 0.93066 0.92287 0.90667 0.91311 0.91095 0.94698 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.35 37.15 0.35 -1.24 16 2 C -0.11 -1.35 4.78 -26.73 -0.13 -1.48 16 3 C -0.06 -0.90 0.76 -153.12 -0.12 -1.02 16 4 C -0.13 -1.64 7.87 37.16 0.29 -1.35 16 5 C -0.12 -1.80 5.75 -25.35 -0.15 -1.95 16 6 C 0.05 0.96 5.68 -2.18 -0.01 0.95 16 7 N -0.50 -9.99 5.12 -229.97 -1.18 -11.17 16 8 C 0.09 2.17 4.74 -3.83 -0.02 2.15 16 9 C 0.06 1.43 1.30 -155.66 -0.20 1.23 16 10 C -0.49 -13.18 7.96 -34.44 -0.27 -13.46 16 11 H 0.06 1.55 7.83 -52.48 -0.41 1.14 16 12 C 0.07 1.91 5.18 -17.82 -0.09 1.82 16 13 N -0.88 -24.95 12.79 55.43 0.71 -24.24 16 14 Si 0.88 21.06 29.55 -169.99 -5.02 16.04 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.18 -4.31 9.88 -26.73 -0.26 -4.57 16 19 C -0.19 -4.35 9.74 -26.72 -0.26 -4.61 16 20 C 0.04 0.64 5.54 -2.18 -0.01 0.63 16 21 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 22 H 0.05 0.55 6.53 -51.93 -0.34 0.21 16 23 H 0.06 0.61 6.60 -51.93 -0.34 0.27 16 24 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.57 6.56 -51.93 -0.34 0.23 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.95 7.71 -51.93 -0.40 0.55 16 30 H 0.06 0.87 6.51 -51.93 -0.34 0.53 16 31 H 0.08 1.74 7.87 -51.93 -0.41 1.33 16 32 H 0.04 0.84 7.73 -51.93 -0.40 0.44 16 33 H 0.04 0.94 7.80 -51.93 -0.40 0.53 16 34 H 0.05 1.25 6.99 -51.93 -0.36 0.89 16 35 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 36 H 0.06 1.35 8.03 -51.93 -0.42 0.94 16 37 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 38 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.03 0.61 7.71 -51.93 -0.40 0.21 16 41 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 LS Contribution 316.48 15.07 4.77 4.77 Total: -1.00 -27.50 316.48 -9.10 -36.60 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.49 Total: 0.90 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -0.89 Total: -22.89 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.47 Total: -35.41 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.50 -9.10 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399493620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.514 kcal (2) G-P(sol) polarization free energy of solvation -27.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds