Wall clock time and date at job start Sun Mar 29 2020 22:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.47033 * 2 1 4 4 C 1.52997 * 110.28438 * 60.67398 * 3 2 1 5 5 C 1.54257 * 110.31999 * 298.54880 * 3 2 1 6 6 C 1.54379 * 105.05801 * 240.99949 * 5 3 2 7 7 N 1.48564 * 104.59543 * 336.14975 * 6 5 3 8 8 C 1.46902 * 110.99812 * 159.03929 * 7 6 5 9 9 C 1.52995 * 109.47302 * 76.08077 * 8 7 6 10 10 C 1.50706 * 115.55014 * 269.74202 * 9 8 7 11 11 H 1.08006 * 119.99851 * 114.47843 * 10 9 8 12 12 C 1.37866 * 119.99786 * 294.48134 * 10 9 8 13 13 N 1.31517 * 120.00244 * 351.05104 * 12 10 9 14 14 Si 1.86804 * 119.99889 * 171.05434 * 12 10 9 15 15 H 1.48498 * 109.47077 * 59.99708 * 14 12 10 16 16 H 1.48504 * 109.47190 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46941 * 299.99877 * 14 12 10 18 18 C 1.52995 * 117.50140 * 124.03236 * 9 8 7 19 19 C 1.53002 * 60.00513 * 252.50931 * 18 9 8 20 20 C 1.48558 * 104.22175 * 39.48295 * 7 6 5 21 21 H 1.09009 * 109.47065 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47201 * 299.99648 * 1 2 3 23 23 H 1.08999 * 109.47807 * 60.00108 * 1 2 3 24 24 H 1.09000 * 109.47584 * 240.00264 * 2 1 3 25 25 H 1.08999 * 109.47807 * 119.99892 * 2 1 3 26 26 H 1.08996 * 109.47592 * 299.32463 * 4 3 2 27 27 H 1.09003 * 109.47187 * 59.32973 * 4 3 2 28 28 H 1.09000 * 109.46620 * 179.32716 * 4 3 2 29 29 H 1.08999 * 110.32418 * 122.10813 * 5 3 2 30 30 H 1.08994 * 110.41320 * 359.93620 * 5 3 2 31 31 H 1.09002 * 110.41734 * 217.37079 * 6 5 3 32 32 H 1.09000 * 110.51234 * 94.97488 * 6 5 3 33 33 H 1.08997 * 109.46983 * 196.07667 * 8 7 6 34 34 H 1.08998 * 109.47291 * 316.08087 * 8 7 6 35 35 H 0.97003 * 120.00009 * 185.03001 * 13 12 10 36 36 H 1.09001 * 117.50262 * 0.02562 * 18 9 8 37 37 H 1.09003 * 117.50178 * 145.02411 * 18 9 8 38 38 H 1.08991 * 117.50125 * 252.51187 * 19 18 9 39 39 H 1.09004 * 117.49753 * 107.48268 * 19 18 9 40 40 H 1.09000 * 110.41274 * 79.29484 * 20 7 6 41 41 H 1.08996 * 110.41358 * 201.73641 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5541 2.1770 1.2512 5 6 1.5667 2.1781 -1.2707 6 6 2.8625 2.5866 -2.0037 7 7 3.8965 2.6339 -0.9380 8 6 5.2455 2.5175 -1.5078 9 6 5.6442 3.8474 -2.1506 10 6 5.2847 3.9994 -3.6062 11 1 4.5598 4.7407 -3.9088 12 6 5.8811 3.1922 -4.5514 13 7 6.8863 2.4148 -4.2125 14 14 5.2615 3.2028 -6.3137 15 1 5.3923 4.5709 -6.8761 16 1 6.0652 2.2550 -7.1267 17 1 3.8349 2.7914 -6.3392 18 6 6.9400 4.5038 -1.6702 19 6 5.5879 5.1006 -1.2744 20 6 3.5818 1.4685 -0.0722 21 1 -0.3634 -1.0278 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3635 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 0.4643 2.1952 1.2617 27 1 1.9174 1.6606 2.1397 28 1 1.9344 3.1984 1.2435 29 1 0.9883 3.0624 -1.0031 30 1 0.9719 1.5124 -1.8960 31 1 2.7458 3.5677 -2.4640 32 1 3.1261 1.8434 -2.7563 33 1 5.9536 2.2694 -0.7172 34 1 5.2542 1.7318 -2.2632 35 1 7.3530 1.9020 -4.8908 36 1 7.5088 3.9880 -0.8965 37 1 7.5329 5.0457 -2.4070 38 1 5.2912 6.0348 -1.7509 39 1 5.2668 4.9774 -0.2400 40 1 3.9569 0.5489 -0.5214 41 1 4.0066 1.6077 0.9219 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399493620.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:38 Heat of formation + Delta-G solvation = -2.768973 kcal Electronic energy + Delta-G solvation = -17938.425159 eV Core-core repulsion = 15431.654313 eV Total energy + Delta-G solvation = -2506.770846 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56090 -38.30412 -35.32380 -34.04244 -31.13277 -30.33995 -28.15987 -27.28066 -25.71408 -23.83288 -22.83203 -22.07814 -20.78288 -19.39425 -18.05881 -16.80365 -16.48217 -16.32068 -15.61170 -15.38833 -15.01159 -14.58100 -14.47695 -14.16339 -13.75392 -13.53905 -13.01664 -12.90397 -12.80043 -12.75454 -12.55034 -12.36747 -12.28601 -12.12109 -11.94261 -11.77275 -11.49723 -11.24115 -11.19392 -11.06088 -10.76814 -10.40897 -9.94766 -9.19443 -8.10030 -6.17993 1.38405 1.39797 1.46643 2.40915 3.14314 3.19850 3.65822 3.76194 3.82967 4.02076 4.29120 4.37103 4.43605 4.48731 4.56882 4.60232 4.73186 4.76553 4.79491 4.86023 4.93330 4.94138 5.03631 5.07071 5.12660 5.14780 5.18485 5.25317 5.26782 5.27456 5.32754 5.40413 5.55022 5.60455 5.66952 5.67801 5.82430 6.21703 6.34408 6.46546 6.87558 7.46717 8.97570 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.007654 C = 0.006580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.695243 B = 3657.323198 C = 4254.403978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.058 4.058 4 C -0.126 4.126 5 C -0.109 4.109 6 C 0.051 3.949 7 N -0.503 5.503 8 C 0.110 3.890 9 C 0.032 3.968 10 C -0.498 4.498 11 H 0.048 0.952 12 C 0.027 3.973 13 N -0.909 5.909 14 Si 0.940 3.060 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.271 1.271 18 C -0.183 4.183 19 C -0.167 4.167 20 C 0.035 3.965 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.012 0.988 33 H 0.039 0.961 34 H 0.012 0.988 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.024 0.976 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.527 -3.930 8.941 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C -0.058 4.058 4 C -0.183 4.183 5 C -0.147 4.147 6 C -0.078 4.078 7 N -0.226 5.226 8 C -0.018 4.018 9 C 0.032 3.968 10 C -0.536 4.536 11 H 0.066 0.934 12 C -0.173 4.173 13 N -0.547 5.547 14 Si 0.766 3.234 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.222 4.222 19 C -0.204 4.204 20 C -0.093 4.093 21 H 0.078 0.922 22 H 0.085 0.915 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.030 0.970 33 H 0.058 0.942 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.042 0.958 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.434 -3.612 9.167 15.094 hybrid contribution 0.624 -0.752 -1.846 2.089 sum -10.810 -4.364 7.321 13.766 Atomic orbital electron populations 1.21825 0.94362 1.01980 1.02434 1.21565 0.97141 0.94384 1.01550 1.21280 0.92635 0.95904 0.96020 1.21793 1.01329 0.99682 0.95504 1.22509 0.95859 1.00345 0.96001 1.22862 0.92054 0.99788 0.93056 1.65345 1.01865 1.38768 1.16621 1.21442 0.89057 0.96800 0.94491 1.18826 0.96124 0.89521 0.92363 1.20662 1.23747 1.18104 0.91060 0.93375 1.25597 0.94935 0.94908 1.01884 1.70089 1.21019 1.29195 1.34352 0.85891 0.78685 0.77987 0.80834 1.19753 1.21116 1.19623 1.22680 0.91278 1.06274 1.01923 1.22652 1.00362 0.97792 0.99575 1.23304 0.96454 0.91689 0.97876 0.92159 0.91452 0.92765 0.93513 0.91191 0.91112 0.92075 0.93299 0.90462 0.90700 0.91950 0.96973 0.94217 0.96946 0.93213 0.91290 0.92349 0.91175 0.89433 0.95764 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.35 71.98 0.67 -1.93 16 2 C -0.11 -2.37 4.78 30.59 0.15 -2.22 16 3 C -0.06 -1.49 0.76 -51.29 -0.04 -1.53 16 4 C -0.13 -2.74 7.87 71.98 0.57 -2.17 16 5 C -0.11 -3.14 5.75 31.49 0.18 -2.96 16 6 C 0.05 1.98 5.68 86.45 0.49 2.47 16 7 N -0.50 -20.01 5.12 -881.50 -4.51 -24.53 16 8 C 0.11 5.24 4.74 86.30 0.41 5.65 16 9 C 0.03 1.64 1.30 -52.93 -0.07 1.57 16 10 C -0.50 -27.45 7.96 25.60 0.20 -27.25 16 11 H 0.05 2.67 7.83 -2.91 -0.02 2.65 16 12 C 0.03 1.48 5.18 84.65 0.44 1.92 16 13 N -0.91 -52.68 12.79 21.44 0.27 -52.41 16 14 Si 0.94 43.79 29.55 68.60 2.03 45.82 16 15 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 C -0.18 -8.89 9.88 30.59 0.30 -8.59 16 19 C -0.17 -7.48 9.74 30.60 0.30 -7.18 16 20 C 0.03 1.14 5.54 86.45 0.48 1.61 16 21 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 22 H 0.07 1.04 6.53 -2.38 -0.02 1.02 16 23 H 0.05 0.98 6.60 -2.39 -0.02 0.97 16 24 H 0.05 1.14 8.13 -2.39 -0.02 1.12 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.28 6.56 -2.39 -0.02 1.27 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 2.06 7.71 -2.39 -0.02 2.04 16 30 H 0.07 1.97 6.51 -2.39 -0.02 1.95 16 31 H 0.06 2.66 7.87 -2.39 -0.02 2.64 16 32 H 0.01 0.53 7.73 -2.39 -0.02 0.51 16 33 H 0.04 1.84 7.80 -2.39 -0.02 1.82 16 34 H 0.01 0.66 6.99 -2.39 -0.02 0.65 16 35 H 0.26 14.42 8.32 -92.71 -0.77 13.65 16 36 H 0.07 3.16 8.03 -2.39 -0.02 3.14 16 37 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.09 3.63 8.14 -2.38 -0.02 3.61 16 40 H 0.02 0.84 7.71 -2.39 -0.02 0.82 16 41 H 0.08 2.43 7.86 -2.39 -0.02 2.41 16 Total: -1.00 -59.29 316.48 2.83 -56.46 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.96 Total: 15.27 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 4.08 Total: -40.61 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -4.24 Total: -76.93 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -59.29 2.83 -56.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399493620.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.687 kcal (2) G-P(sol) polarization free energy of solvation -59.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds