Wall clock time and date at job start Sun Mar 29 2020 22:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46967 * 2 1 4 4 C 1.53007 * 110.27448 * 302.08860 * 3 2 1 5 5 C 1.54601 * 110.31076 * 64.28301 * 3 2 1 6 6 C 1.54942 * 102.91866 * 140.87221 * 5 3 2 7 7 N 1.48527 * 103.22765 * 322.58819 * 6 5 3 8 8 C 1.46902 * 110.99997 * 159.72041 * 7 6 5 9 9 C 1.53002 * 109.46873 * 58.35752 * 8 7 6 10 10 C 1.50703 * 115.54994 * 55.17835 * 9 8 7 11 11 H 1.07988 * 120.00251 * 270.07905 * 10 9 8 12 12 C 1.37888 * 119.99673 * 90.08218 * 10 9 8 13 13 N 1.31506 * 119.99782 * 174.55444 * 12 10 9 14 14 Si 1.86797 * 119.99720 * 354.55143 * 12 10 9 15 15 H 1.48498 * 109.47074 * 93.06383 * 14 12 10 16 16 H 1.48504 * 109.46921 * 213.05491 * 14 12 10 17 17 H 1.48500 * 109.47613 * 333.05769 * 14 12 10 18 18 C 1.53001 * 117.49991 * 269.51056 * 9 8 7 19 19 C 1.52999 * 117.49820 * 200.85220 * 9 8 7 20 20 C 1.47903 * 105.82394 * 39.20999 * 7 6 5 21 21 H 1.08997 * 109.47162 * 300.00032 * 1 2 3 22 22 H 1.08997 * 109.47490 * 59.99795 * 1 2 3 23 23 H 1.09002 * 109.47090 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46623 * 240.00059 * 2 1 3 25 25 H 1.08994 * 109.47074 * 119.99902 * 2 1 3 26 26 H 1.08995 * 109.47418 * 297.91385 * 4 3 2 27 27 H 1.08999 * 109.46715 * 57.91637 * 4 3 2 28 28 H 1.09004 * 109.47205 * 177.90934 * 4 3 2 29 29 H 1.08998 * 110.72480 * 259.23384 * 5 3 2 30 30 H 1.08996 * 110.71891 * 22.51548 * 5 3 2 31 31 H 1.08996 * 110.66454 * 204.15269 * 6 5 3 32 32 H 1.08999 * 110.66371 * 81.02379 * 6 5 3 33 33 H 1.09002 * 109.47304 * 178.35685 * 8 7 6 34 34 H 1.09001 * 109.47209 * 298.36134 * 8 7 6 35 35 H 0.97001 * 120.00019 * 179.97438 * 13 12 10 36 36 H 1.09006 * 117.49483 * 359.97438 * 18 9 8 37 37 H 1.09000 * 117.50110 * 145.01966 * 18 9 8 38 38 H 1.09005 * 117.49810 * 214.98310 * 19 9 8 39 39 H 1.09003 * 117.50117 * 359.97438 * 19 9 8 40 40 H 1.08993 * 109.91834 * 94.01944 * 20 7 6 41 41 H 1.09001 * 109.91786 * 215.12070 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4979 2.1965 -1.2160 5 6 1.6257 2.1581 1.3063 6 6 2.8750 3.0093 1.6461 7 7 4.0039 2.1284 1.2519 8 6 5.2321 2.9074 1.0449 9 6 5.5802 3.6617 2.3298 10 6 5.7115 2.8117 3.5672 11 1 4.8477 2.6238 4.1875 12 6 6.9347 2.2738 3.9075 13 7 7.0740 1.6225 5.0414 14 14 8.3937 2.4703 2.7577 15 1 9.1689 3.6768 3.1435 16 1 9.2644 1.2711 2.8535 17 1 7.9080 2.6193 1.3624 18 6 5.0093 5.0712 2.4983 19 6 6.4997 4.8784 2.2076 20 6 3.5798 1.4651 -0.0001 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.8605 1.7232 -2.1284 27 1 0.4082 2.1721 -1.2024 28 1 1.8385 3.2314 -1.1834 29 1 0.7582 2.7962 1.1380 30 1 1.4259 1.4340 2.0960 31 1 2.9124 3.2285 2.7132 32 1 2.8834 3.9300 1.0627 33 1 6.0497 2.2348 0.7856 34 1 5.0778 3.6207 0.2353 35 1 7.9344 1.2437 5.2806 36 1 4.3860 5.4612 1.6935 37 1 4.7290 5.3838 3.5042 38 1 7.1995 5.0643 3.0224 39 1 6.8571 5.1413 1.2119 40 1 3.9429 2.0279 -0.8599 41 1 3.9690 0.4474 -0.0314 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399493627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:40 Heat of formation + Delta-G solvation = 19.733259 kcal Electronic energy + Delta-G solvation = -17982.557450 eV Core-core repulsion = 15476.762374 eV Total energy + Delta-G solvation = -2505.795076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40404 -36.96896 -34.05989 -31.91225 -30.13220 -29.08320 -26.95840 -25.61363 -24.28756 -22.76825 -21.50012 -20.66471 -18.97602 -18.34029 -16.20507 -15.29746 -14.98093 -14.73303 -14.32963 -14.16734 -13.70642 -13.47904 -12.81681 -12.66025 -12.63762 -12.17331 -11.94505 -11.85224 -11.60896 -11.37752 -11.18891 -10.96067 -10.77360 -10.45508 -10.34098 -10.28272 -10.13254 -10.11687 -9.86760 -9.46494 -8.92680 -8.42919 -8.37325 -7.54347 -5.95393 -3.93271 3.37150 3.46210 3.50283 4.54345 4.57995 4.75222 4.89043 4.96914 5.10733 5.32391 5.37851 5.45326 5.55660 5.62932 5.69695 5.71472 5.79418 5.89560 5.96454 5.97866 6.08836 6.11684 6.13771 6.19344 6.23995 6.27479 6.31628 6.37872 6.49880 6.51534 6.56032 6.65613 6.72034 6.81628 7.12385 7.22745 7.65455 7.83922 7.96134 8.67602 9.10015 9.68977 11.17468 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031839 B = 0.007214 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.213803 B = 3880.589470 C = 4108.549894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.071 4.071 4 C -0.138 4.138 5 C -0.114 4.114 6 C 0.047 3.953 7 N -0.486 5.486 8 C 0.086 3.914 9 C 0.010 3.990 10 C -0.457 4.457 11 H 0.078 0.922 12 C 0.074 3.926 13 N -0.903 5.903 14 Si 0.879 3.121 15 H -0.283 1.283 16 H -0.296 1.296 17 H -0.261 1.261 18 C -0.184 4.184 19 C -0.204 4.204 20 C 0.041 3.959 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.006 0.994 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 0.743 -11.619 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.072 4.072 4 C -0.195 4.195 5 C -0.152 4.152 6 C -0.081 4.081 7 N -0.209 5.209 8 C -0.042 4.042 9 C 0.009 3.991 10 C -0.495 4.495 11 H 0.096 0.904 12 C -0.127 4.127 13 N -0.542 5.542 14 Si 0.708 3.292 15 H -0.209 1.209 16 H -0.223 1.223 17 H -0.186 1.186 18 C -0.221 4.221 19 C -0.242 4.242 20 C -0.087 4.087 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.032 0.251 -11.099 14.963 hybrid contribution 0.906 0.722 -1.267 1.717 sum -9.125 0.972 -12.366 15.399 Atomic orbital electron populations 1.21841 0.96262 1.01072 1.01778 1.21566 0.95438 0.95482 1.02053 1.21409 0.94957 0.95425 0.95415 1.21934 1.00718 0.99754 0.97094 1.22637 0.97353 0.98755 0.96446 1.23124 0.89485 0.93608 1.01850 1.64658 1.02391 1.27587 1.26280 1.22040 0.92104 0.94773 0.95269 1.19407 0.98117 0.86379 0.95219 1.20102 0.96038 1.28788 1.04574 0.90417 1.24914 0.98397 0.94789 0.94550 1.69896 1.24690 1.37567 1.22046 0.86887 0.82800 0.76774 0.82787 1.20939 1.22342 1.18590 1.22876 0.94920 1.03694 1.00634 1.22976 0.93526 1.07332 1.00340 1.23023 0.93438 1.00154 0.92132 0.92553 0.92848 0.93242 0.92450 0.91278 0.92968 0.92405 0.93046 0.91941 0.90756 0.89420 0.95080 0.91284 0.97616 0.92905 0.91502 0.89609 0.89405 0.91329 0.94836 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.34 37.16 0.35 -1.21 16 2 C -0.11 -1.30 4.67 -26.73 -0.12 -1.42 16 3 C -0.07 -0.96 0.70 -153.15 -0.11 -1.06 16 4 C -0.14 -1.58 7.86 37.16 0.29 -1.28 16 5 C -0.11 -1.64 5.20 -24.86 -0.13 -1.77 16 6 C 0.05 0.83 5.05 -1.90 -0.01 0.82 16 7 N -0.49 -9.65 5.05 -230.45 -1.16 -10.82 16 8 C 0.09 1.84 4.53 -3.82 -0.02 1.82 16 9 C 0.01 0.23 0.32 -155.66 -0.05 0.18 16 10 C -0.46 -12.77 9.12 -34.43 -0.31 -13.08 16 11 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 12 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 13 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 14 Si 0.88 22.17 24.94 -169.99 -4.24 17.94 16 15 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 17 H -0.26 -6.25 5.57 56.52 0.32 -5.94 16 18 C -0.18 -3.78 8.75 -26.69 -0.23 -4.01 16 19 C -0.20 -4.43 7.63 -26.69 -0.20 -4.64 16 20 C 0.04 0.67 6.02 -2.75 -0.02 0.65 16 21 H 0.06 0.58 7.35 -51.93 -0.38 0.20 16 22 H 0.05 0.50 6.41 -51.93 -0.33 0.17 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.93 8.11 -51.93 -0.42 0.50 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.59 6.36 -51.93 -0.33 0.26 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.79 7.86 -51.93 -0.41 0.38 16 30 H 0.07 1.12 7.78 -51.93 -0.40 0.71 16 31 H 0.09 1.73 7.77 -51.93 -0.40 1.33 16 32 H 0.03 0.53 7.38 -51.93 -0.38 0.15 16 33 H 0.07 1.57 6.45 -51.93 -0.33 1.23 16 34 H 0.01 0.12 7.92 -51.93 -0.41 -0.30 16 35 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 36 H 0.07 1.23 7.59 -51.93 -0.39 0.83 16 37 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.09 2.01 7.19 -51.93 -0.37 1.64 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.03 0.53 7.20 -51.93 -0.37 0.15 16 41 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 LS Contribution 306.70 15.07 4.62 4.62 Total: -1.00 -29.67 306.70 -8.21 -37.87 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.53 Total: 0.49 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.66 Total: -22.95 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: -0.39 Total: -37.96 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.24 Total: 17.94 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.67 -8.21 -37.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399493627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.606 kcal (2) G-P(sol) polarization free energy of solvation -29.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds