Wall clock time and date at job start Sun Mar 29 2020 22:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46967 * 2 1 4 4 C 1.53007 * 110.27448 * 302.08860 * 3 2 1 5 5 C 1.54601 * 110.31076 * 64.28301 * 3 2 1 6 6 C 1.54942 * 102.91866 * 140.87221 * 5 3 2 7 7 N 1.48527 * 103.22765 * 322.58819 * 6 5 3 8 8 C 1.46902 * 110.99997 * 159.72041 * 7 6 5 9 9 C 1.53002 * 109.46873 * 58.35752 * 8 7 6 10 10 C 1.50703 * 115.54994 * 55.17835 * 9 8 7 11 11 H 1.07988 * 120.00251 * 270.07905 * 10 9 8 12 12 C 1.37888 * 119.99673 * 90.08218 * 10 9 8 13 13 N 1.31506 * 119.99782 * 174.55444 * 12 10 9 14 14 Si 1.86797 * 119.99720 * 354.55143 * 12 10 9 15 15 H 1.48498 * 109.47074 * 93.06383 * 14 12 10 16 16 H 1.48504 * 109.46921 * 213.05491 * 14 12 10 17 17 H 1.48500 * 109.47613 * 333.05769 * 14 12 10 18 18 C 1.53001 * 117.49991 * 269.51056 * 9 8 7 19 19 C 1.52999 * 117.49820 * 200.85220 * 9 8 7 20 20 C 1.47903 * 105.82394 * 39.20999 * 7 6 5 21 21 H 1.08997 * 109.47162 * 300.00032 * 1 2 3 22 22 H 1.08997 * 109.47490 * 59.99795 * 1 2 3 23 23 H 1.09002 * 109.47090 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46623 * 240.00059 * 2 1 3 25 25 H 1.08994 * 109.47074 * 119.99902 * 2 1 3 26 26 H 1.08995 * 109.47418 * 297.91385 * 4 3 2 27 27 H 1.08999 * 109.46715 * 57.91637 * 4 3 2 28 28 H 1.09004 * 109.47205 * 177.90934 * 4 3 2 29 29 H 1.08998 * 110.72480 * 259.23384 * 5 3 2 30 30 H 1.08996 * 110.71891 * 22.51548 * 5 3 2 31 31 H 1.08996 * 110.66454 * 204.15269 * 6 5 3 32 32 H 1.08999 * 110.66371 * 81.02379 * 6 5 3 33 33 H 1.09002 * 109.47304 * 178.35685 * 8 7 6 34 34 H 1.09001 * 109.47209 * 298.36134 * 8 7 6 35 35 H 0.97001 * 120.00019 * 179.97438 * 13 12 10 36 36 H 1.09006 * 117.49483 * 359.97438 * 18 9 8 37 37 H 1.09000 * 117.50110 * 145.01966 * 18 9 8 38 38 H 1.09005 * 117.49810 * 214.98310 * 19 9 8 39 39 H 1.09003 * 117.50117 * 359.97438 * 19 9 8 40 40 H 1.08993 * 109.91834 * 94.01944 * 20 7 6 41 41 H 1.09001 * 109.91786 * 215.12070 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4979 2.1965 -1.2160 5 6 1.6257 2.1581 1.3063 6 6 2.8750 3.0093 1.6461 7 7 4.0039 2.1284 1.2519 8 6 5.2321 2.9074 1.0449 9 6 5.5802 3.6617 2.3298 10 6 5.7115 2.8117 3.5672 11 1 4.8477 2.6238 4.1875 12 6 6.9347 2.2738 3.9075 13 7 7.0740 1.6225 5.0414 14 14 8.3937 2.4703 2.7577 15 1 9.1689 3.6768 3.1435 16 1 9.2644 1.2711 2.8535 17 1 7.9080 2.6193 1.3624 18 6 5.0093 5.0712 2.4983 19 6 6.4997 4.8784 2.2076 20 6 3.5798 1.4651 -0.0001 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.8605 1.7232 -2.1284 27 1 0.4082 2.1721 -1.2024 28 1 1.8385 3.2314 -1.1834 29 1 0.7582 2.7962 1.1380 30 1 1.4259 1.4340 2.0960 31 1 2.9124 3.2285 2.7132 32 1 2.8834 3.9300 1.0627 33 1 6.0497 2.2348 0.7856 34 1 5.0778 3.6207 0.2353 35 1 7.9344 1.2437 5.2806 36 1 4.3860 5.4612 1.6935 37 1 4.7290 5.3838 3.5042 38 1 7.1995 5.0643 3.0224 39 1 6.8571 5.1413 1.2119 40 1 3.9429 2.0279 -0.8599 41 1 3.9690 0.4474 -0.0314 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399493627.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:40 Heat of formation + Delta-G solvation = 1.133951 kcal Electronic energy + Delta-G solvation = -17983.363976 eV Core-core repulsion = 15476.762374 eV Total energy + Delta-G solvation = -2506.601602 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71164 -38.59290 -35.36591 -34.10929 -31.31693 -30.20384 -28.38383 -27.42520 -25.74923 -23.91866 -23.11063 -22.09659 -20.78992 -19.55255 -18.17472 -16.86476 -16.48918 -16.27236 -15.53336 -15.37822 -15.20899 -14.94719 -14.69257 -14.12771 -13.88803 -13.55489 -13.16830 -13.11573 -12.94231 -12.76113 -12.59956 -12.51548 -12.14963 -12.06228 -11.82540 -11.74997 -11.51994 -11.31573 -11.21892 -11.17447 -10.82782 -10.54351 -10.21597 -9.00575 -8.19931 -6.21146 1.35826 1.38993 1.50973 2.42579 3.04746 3.14855 3.44928 3.65912 3.79899 3.94443 4.16689 4.31775 4.38400 4.40828 4.45263 4.49959 4.51935 4.57626 4.72934 4.76052 4.79229 4.83080 4.84733 4.92419 4.98819 5.07532 5.13904 5.15486 5.23289 5.27531 5.29667 5.36204 5.40076 5.51239 5.51913 5.64392 5.78157 6.25728 6.35454 6.49792 6.84333 7.44304 8.96981 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.031839 B = 0.007214 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.213803 B = 3880.589470 C = 4108.549894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.065 4.065 4 C -0.132 4.132 5 C -0.107 4.107 6 C 0.050 3.950 7 N -0.521 5.521 8 C 0.095 3.905 9 C -0.016 4.016 10 C -0.449 4.449 11 H 0.028 0.972 12 C 0.014 3.986 13 N -0.957 5.957 14 Si 0.938 3.062 15 H -0.273 1.273 16 H -0.302 1.302 17 H -0.236 1.236 18 C -0.163 4.163 19 C -0.199 4.199 20 C 0.039 3.961 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.196 1.918 -14.871 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.065 4.065 4 C -0.189 4.189 5 C -0.145 4.145 6 C -0.077 4.077 7 N -0.245 5.245 8 C -0.033 4.033 9 C -0.017 4.017 10 C -0.487 4.487 11 H 0.046 0.954 12 C -0.182 4.182 13 N -0.598 5.598 14 Si 0.764 3.236 15 H -0.199 1.199 16 H -0.230 1.230 17 H -0.159 1.159 18 C -0.200 4.200 19 C -0.237 4.237 20 C -0.089 4.089 21 H 0.071 0.929 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.062 0.938 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.953 1.444 -14.371 18.127 hybrid contribution 1.093 0.342 -0.163 1.157 sum -9.859 1.787 -14.535 17.654 Atomic orbital electron populations 1.21808 0.94498 1.01893 1.02308 1.21539 0.96946 0.94481 1.01461 1.21391 0.92906 0.96441 0.95802 1.21894 1.01786 0.99157 0.96099 1.22601 0.96769 0.98419 0.96727 1.23025 0.90320 0.94468 0.99920 1.64536 1.02800 1.28381 1.28760 1.21821 0.92368 0.94675 0.94444 1.19306 1.01114 0.86985 0.94329 1.20223 0.94149 1.28690 1.05656 0.95352 1.25750 1.01611 0.94805 0.95997 1.70058 1.25461 1.39855 1.24444 0.85910 0.79067 0.76664 0.81919 1.19890 1.22978 1.15940 1.22859 0.94877 1.00976 1.01256 1.23021 0.93740 1.05487 1.01438 1.23088 0.95615 0.99308 0.90842 0.92937 0.91299 0.92417 0.91446 0.93559 0.91915 0.90619 0.93312 0.89398 0.92208 0.92797 0.93818 0.93060 0.95171 0.93054 0.88275 0.90721 0.91007 0.88276 0.93778 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.34 71.98 0.67 -1.95 16 2 C -0.11 -2.38 4.67 30.59 0.14 -2.23 16 3 C -0.06 -1.59 0.70 -51.30 -0.04 -1.62 16 4 C -0.13 -2.50 7.86 71.98 0.57 -1.93 16 5 C -0.11 -2.94 5.20 31.80 0.17 -2.77 16 6 C 0.05 1.74 5.05 86.65 0.44 2.17 16 7 N -0.52 -20.42 5.05 -883.02 -4.46 -24.88 16 8 C 0.10 3.91 4.53 86.30 0.39 4.30 16 9 C -0.02 -0.74 0.32 -52.93 -0.02 -0.76 16 10 C -0.45 -25.95 9.12 25.60 0.23 -25.71 16 11 H 0.03 1.86 8.06 -2.92 -0.02 1.84 16 12 C 0.01 0.83 5.47 84.66 0.46 1.29 16 13 N -0.96 -61.76 13.96 21.45 0.30 -61.47 16 14 Si 0.94 45.98 24.94 68.60 1.71 47.70 16 15 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 16 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 17 H -0.24 -10.53 5.57 99.48 0.55 -9.98 16 18 C -0.16 -6.37 8.75 30.62 0.27 -6.10 16 19 C -0.20 -8.15 7.63 30.62 0.23 -7.92 16 20 C 0.04 1.22 6.02 86.45 0.52 1.74 16 21 H 0.05 0.97 7.35 -2.39 -0.02 0.95 16 22 H 0.07 1.02 6.41 -2.39 -0.02 1.00 16 23 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.05 1.23 8.11 -2.39 -0.02 1.21 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.18 6.36 -2.39 -0.02 1.17 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.96 7.86 -2.39 -0.02 1.94 16 30 H 0.06 1.80 7.78 -2.39 -0.02 1.78 16 31 H 0.05 2.19 7.77 -2.39 -0.02 2.17 16 32 H 0.04 1.38 7.38 -2.39 -0.02 1.36 16 33 H 0.05 2.25 6.45 -2.39 -0.02 2.23 16 34 H 0.03 1.09 7.92 -2.39 -0.02 1.07 16 35 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 36 H 0.10 3.26 7.59 -2.38 -0.02 3.24 16 37 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.07 3.17 7.19 -2.38 -0.02 3.16 16 39 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.04 1.27 7.20 -2.39 -0.02 1.25 16 41 H 0.06 2.05 7.69 -2.39 -0.02 2.03 16 Total: -1.00 -66.68 306.70 2.40 -64.28 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.81 Total: 15.88 kcal Atomic # 6 Polarization: -45.55 SS G_CDS: 4.04 Total: -41.51 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -4.16 Total: -86.34 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.71 Total: 47.70 kcal Total: -66.68 2.40 -64.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399493627.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.414 kcal (2) G-P(sol) polarization free energy of solvation -66.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds