Wall clock time and date at job start Sun Mar 29 2020 22:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47555 * 2 1 4 4 H 1.08997 * 110.59371 * 308.42367 * 3 2 1 5 5 C 1.54938 * 110.66373 * 71.60667 * 3 2 1 6 6 C 1.54604 * 102.91776 * 155.85448 * 5 3 2 7 7 H 1.08999 * 110.31054 * 96.95895 * 6 5 3 8 8 C 1.53005 * 110.30245 * 219.12585 * 6 5 3 9 9 C 1.53989 * 105.13729 * 338.03956 * 6 5 3 10 10 N 1.47900 * 107.06120 * 358.77724 * 9 6 5 11 11 C 1.46897 * 110.99699 * 145.84345 * 10 9 6 12 12 C 1.52995 * 109.47520 * 75.60142 * 11 10 9 13 13 C 1.50700 * 115.54824 * 34.41542 * 12 11 10 14 14 H 1.07999 * 120.00146 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00036 * 180.02562 * 13 12 11 16 16 N 1.31506 * 119.99916 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99765 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47060 * 59.99830 * 17 15 13 19 19 H 1.48501 * 109.46778 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46794 * 299.99499 * 17 15 13 21 21 C 1.52996 * 117.50101 * 248.74652 * 12 11 10 22 22 C 1.53003 * 117.50315 * 180.08439 * 12 11 10 23 23 H 1.08996 * 109.47133 * 174.73244 * 1 2 3 24 24 H 1.08999 * 109.47311 * 294.73233 * 1 2 3 25 25 H 1.08999 * 109.46760 * 54.73101 * 1 2 3 26 26 H 1.09001 * 109.47060 * 239.99519 * 2 1 3 27 27 H 1.09008 * 109.46953 * 120.00392 * 2 1 3 28 28 H 1.08995 * 110.72362 * 37.49430 * 5 3 2 29 29 H 1.09000 * 110.72156 * 274.20667 * 5 3 2 30 30 H 1.09000 * 109.46463 * 177.16837 * 8 6 5 31 31 H 1.08998 * 109.47223 * 297.16447 * 8 6 5 32 32 H 1.08990 * 109.47476 * 57.17111 * 8 6 5 33 33 H 1.09003 * 109.91494 * 118.13225 * 9 6 5 34 34 H 1.09002 * 109.91469 * 239.22306 * 9 6 5 35 35 H 1.09006 * 109.47048 * 195.60194 * 11 10 9 36 36 H 1.09000 * 109.47638 * 315.59663 * 11 10 9 37 37 H 0.97004 * 120.00267 * 180.02562 * 16 15 13 38 38 H 1.09003 * 117.49950 * 0.02562 * 21 12 11 39 39 H 1.09001 * 117.50109 * 145.01564 * 21 12 11 40 40 H 1.08999 * 117.49667 * 214.97940 * 22 12 11 41 41 H 1.08999 * 117.49334 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5701 2.0153 -0.7994 5 6 1.7911 2.1104 1.3756 6 6 2.8604 3.2264 1.4166 7 1 2.4267 4.1774 1.1075 8 6 3.4522 3.3433 2.8227 9 6 3.9434 2.7824 0.4160 10 7 3.5192 1.4755 -0.1311 11 6 3.9265 1.3355 -1.5356 12 6 5.4279 1.0495 -1.6052 13 6 5.9829 0.2128 -0.4815 14 1 5.3292 -0.1412 0.3020 15 6 7.3255 -0.1001 -0.4530 16 7 8.1215 0.3313 -1.4067 17 14 8.0135 -1.1367 0.9404 18 1 7.3367 -2.4584 0.9549 19 1 9.4721 -1.3302 0.7398 20 1 7.7786 -0.4460 2.2338 21 6 6.3290 2.1419 -2.1842 22 6 6.0497 0.8720 -2.9918 23 1 -0.3633 -1.0233 -0.0943 24 1 -0.3634 0.4299 0.9334 25 1 -0.3633 0.5934 -0.8390 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.9470 1.3969 2.1847 29 1 0.7884 2.5352 1.4223 30 1 4.2385 4.0981 2.8242 31 1 2.6692 3.6328 3.5235 32 1 3.8705 2.3823 3.1219 33 1 4.0268 3.5126 -0.3891 34 1 4.9013 2.6815 0.9262 35 1 3.3781 0.5117 -1.9925 36 1 3.7073 2.2592 -2.0713 37 1 9.0660 0.1109 -1.3869 38 1 5.8524 3.0647 -2.5151 39 1 7.3235 2.2553 -1.7526 40 1 6.8605 0.1503 -3.0911 41 1 5.3892 0.9594 -3.8545 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399644267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:56 Heat of formation + Delta-G solvation = 22.089756 kcal Electronic energy + Delta-G solvation = -18030.347299 eV Core-core repulsion = 15524.654409 eV Total energy + Delta-G solvation = -2505.692890 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.03450 -36.28548 -33.55023 -32.39697 -31.16348 -28.14449 -26.32314 -25.42136 -24.26498 -22.35590 -20.62052 -19.81745 -19.50745 -18.67958 -16.08441 -15.45518 -14.76779 -14.56607 -14.34386 -13.76574 -13.30357 -13.12072 -12.71028 -12.59419 -12.29754 -12.28531 -11.68959 -11.51737 -11.10524 -10.93366 -10.86367 -10.71617 -10.62429 -10.46573 -10.30086 -10.20270 -10.01064 -9.97131 -9.86524 -9.31842 -8.64640 -8.20385 -7.89389 -7.50281 -5.79091 -3.80011 3.40075 3.44196 3.47974 4.52805 4.57737 4.96404 5.02679 5.19986 5.25958 5.40210 5.45731 5.63333 5.71236 5.75186 5.82028 5.89620 5.94297 6.05504 6.13749 6.20820 6.23141 6.29044 6.31659 6.41442 6.42522 6.51673 6.59036 6.66951 6.67730 6.84386 6.84692 7.13383 7.29735 7.39376 7.74357 7.78913 8.01842 8.22548 8.33181 8.75069 9.21192 9.73620 11.17933 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.008314 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.098430 B = 3367.194558 C = 3549.659586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C 0.059 3.941 4 H 0.040 0.960 5 C -0.110 4.110 6 C -0.107 4.107 7 H 0.064 0.936 8 C -0.138 4.138 9 C 0.053 3.947 10 N -0.484 5.484 11 C 0.094 3.906 12 C 0.027 3.973 13 C -0.442 4.442 14 H 0.074 0.926 15 C 0.048 3.952 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.292 1.292 20 H -0.279 1.279 21 C -0.193 4.193 22 C -0.192 4.192 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.012 0.988 37 H 0.255 0.745 38 H 0.035 0.965 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.823 3.634 4.186 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.049 4.049 4 H 0.058 0.942 5 C -0.148 4.148 6 C -0.126 4.126 7 H 0.082 0.918 8 C -0.196 4.196 9 C -0.075 4.075 10 N -0.207 5.207 11 C -0.034 4.034 12 C 0.026 3.974 13 C -0.480 4.480 14 H 0.092 0.908 15 C -0.151 4.151 16 N -0.529 5.529 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.205 1.205 21 C -0.231 4.231 22 C -0.230 4.230 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.367 3.186 4.422 12.606 hybrid contribution 0.209 0.264 -0.016 0.337 sum -11.158 3.450 4.406 12.483 Atomic orbital electron populations 1.21764 0.96495 1.01116 1.01236 1.21395 0.94109 0.96036 1.03010 1.22801 0.90419 0.95752 0.95958 0.94239 1.22581 0.97381 0.97292 0.97545 1.22040 0.96277 0.97972 0.96286 0.91781 1.21794 1.00040 1.02251 0.95482 1.22825 0.98711 0.89659 0.96269 1.64620 1.06974 1.30432 1.18714 1.21789 0.97360 0.97388 0.86818 1.18950 0.87332 0.98092 0.93041 1.20632 0.92396 1.28406 1.06551 0.90788 1.25065 0.97370 0.96554 0.96095 1.70019 1.04491 1.45975 1.32439 0.86630 0.77445 0.80874 0.82799 1.20505 1.21778 1.20459 1.22872 1.03925 0.89584 1.06692 1.22823 1.04278 1.02321 0.93586 0.93002 0.93027 0.93275 0.91755 0.91270 0.90783 0.92181 0.92877 0.93454 0.91949 0.94897 0.89564 0.92345 0.97021 0.93492 0.94703 0.87375 0.87195 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.74 37.16 0.36 -1.35 16 2 C -0.11 -1.58 5.68 -26.73 -0.15 -1.73 16 3 C 0.06 0.93 2.28 -65.79 -0.15 0.78 16 4 H 0.04 0.62 8.02 -51.93 -0.42 0.21 16 5 C -0.11 -1.52 5.54 -24.87 -0.14 -1.66 16 6 C -0.11 -1.55 3.59 -89.26 -0.32 -1.87 16 7 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 8 C -0.14 -1.84 8.89 37.16 0.33 -1.51 16 9 C 0.05 0.98 6.02 -2.76 -0.02 0.96 16 10 N -0.48 -9.41 3.75 -222.64 -0.84 -10.25 16 11 C 0.09 2.01 4.90 -3.83 -0.02 1.99 16 12 C 0.03 0.67 2.15 -155.66 -0.33 0.33 16 13 C -0.44 -12.05 8.70 -34.44 -0.30 -12.35 16 14 H 0.07 2.04 7.22 -52.49 -0.38 1.66 16 15 C 0.05 1.34 5.28 -17.82 -0.09 1.24 16 16 N -0.89 -25.24 8.59 55.43 0.48 -24.77 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.19 -4.91 9.31 -26.70 -0.25 -5.16 16 22 C -0.19 -4.89 9.39 -26.69 -0.25 -5.14 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.55 7.83 -51.93 -0.41 0.14 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.03 7.17 -51.93 -0.37 0.66 16 27 H 0.07 1.06 7.99 -51.92 -0.41 0.65 16 28 H 0.07 1.04 7.66 -51.93 -0.40 0.64 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.03 0.62 7.47 -51.93 -0.39 0.23 16 34 H 0.09 1.78 7.68 -51.93 -0.40 1.38 16 35 H 0.06 1.22 7.05 -51.93 -0.37 0.85 16 36 H 0.01 0.24 7.40 -51.93 -0.38 -0.14 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.03 0.82 8.05 -51.93 -0.42 0.40 16 39 H 0.11 3.04 6.28 -51.93 -0.33 2.71 16 40 H 0.11 3.09 6.28 -51.93 -0.33 2.76 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -27.84 314.20 -9.49 -37.33 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -7.51 Total: 1.73 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -1.33 Total: -25.45 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: -0.36 Total: -35.02 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.84 -9.49 -37.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399644267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.421 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds