Wall clock time and date at job start Sun Mar 29 2020 22:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47555 * 2 1 4 4 H 1.08997 * 110.59371 * 308.42367 * 3 2 1 5 5 C 1.54938 * 110.66373 * 71.60667 * 3 2 1 6 6 C 1.54604 * 102.91776 * 155.85448 * 5 3 2 7 7 H 1.08999 * 110.31054 * 96.95895 * 6 5 3 8 8 C 1.53005 * 110.30245 * 219.12585 * 6 5 3 9 9 C 1.53989 * 105.13729 * 338.03956 * 6 5 3 10 10 N 1.47900 * 107.06120 * 358.77724 * 9 6 5 11 11 C 1.46897 * 110.99699 * 145.84345 * 10 9 6 12 12 C 1.52995 * 109.47520 * 75.60142 * 11 10 9 13 13 C 1.50700 * 115.54824 * 34.41542 * 12 11 10 14 14 H 1.07999 * 120.00146 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00036 * 180.02562 * 13 12 11 16 16 N 1.31506 * 119.99916 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99765 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47060 * 59.99830 * 17 15 13 19 19 H 1.48501 * 109.46778 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46794 * 299.99499 * 17 15 13 21 21 C 1.52996 * 117.50101 * 248.74652 * 12 11 10 22 22 C 1.53003 * 117.50315 * 180.08439 * 12 11 10 23 23 H 1.08996 * 109.47133 * 174.73244 * 1 2 3 24 24 H 1.08999 * 109.47311 * 294.73233 * 1 2 3 25 25 H 1.08999 * 109.46760 * 54.73101 * 1 2 3 26 26 H 1.09001 * 109.47060 * 239.99519 * 2 1 3 27 27 H 1.09008 * 109.46953 * 120.00392 * 2 1 3 28 28 H 1.08995 * 110.72362 * 37.49430 * 5 3 2 29 29 H 1.09000 * 110.72156 * 274.20667 * 5 3 2 30 30 H 1.09000 * 109.46463 * 177.16837 * 8 6 5 31 31 H 1.08998 * 109.47223 * 297.16447 * 8 6 5 32 32 H 1.08990 * 109.47476 * 57.17111 * 8 6 5 33 33 H 1.09003 * 109.91494 * 118.13225 * 9 6 5 34 34 H 1.09002 * 109.91469 * 239.22306 * 9 6 5 35 35 H 1.09006 * 109.47048 * 195.60194 * 11 10 9 36 36 H 1.09000 * 109.47638 * 315.59663 * 11 10 9 37 37 H 0.97004 * 120.00267 * 180.02562 * 16 15 13 38 38 H 1.09003 * 117.49950 * 0.02562 * 21 12 11 39 39 H 1.09001 * 117.50109 * 145.01564 * 21 12 11 40 40 H 1.08999 * 117.49667 * 214.97940 * 22 12 11 41 41 H 1.08999 * 117.49334 * 0.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5701 2.0153 -0.7994 5 6 1.7911 2.1104 1.3756 6 6 2.8604 3.2264 1.4166 7 1 2.4267 4.1774 1.1075 8 6 3.4522 3.3433 2.8227 9 6 3.9434 2.7824 0.4160 10 7 3.5192 1.4755 -0.1311 11 6 3.9265 1.3355 -1.5356 12 6 5.4279 1.0495 -1.6052 13 6 5.9829 0.2128 -0.4815 14 1 5.3292 -0.1412 0.3020 15 6 7.3255 -0.1001 -0.4530 16 7 8.1215 0.3313 -1.4067 17 14 8.0135 -1.1367 0.9404 18 1 7.3367 -2.4584 0.9549 19 1 9.4721 -1.3302 0.7398 20 1 7.7786 -0.4460 2.2338 21 6 6.3290 2.1419 -2.1842 22 6 6.0497 0.8720 -2.9918 23 1 -0.3633 -1.0233 -0.0943 24 1 -0.3634 0.4299 0.9334 25 1 -0.3633 0.5934 -0.8390 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.9470 1.3969 2.1847 29 1 0.7884 2.5352 1.4223 30 1 4.2385 4.0981 2.8242 31 1 2.6692 3.6328 3.5235 32 1 3.8705 2.3823 3.1219 33 1 4.0268 3.5126 -0.3891 34 1 4.9013 2.6815 0.9262 35 1 3.3781 0.5117 -1.9925 36 1 3.7073 2.2592 -2.0713 37 1 9.0660 0.1109 -1.3869 38 1 5.8524 3.0647 -2.5151 39 1 7.3235 2.2553 -1.7526 40 1 6.8605 0.1503 -3.0911 41 1 5.3892 0.9594 -3.8545 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399644267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:33:55 Heat of formation + Delta-G solvation = 8.324861 kcal Electronic energy + Delta-G solvation = -18030.944190 eV Core-core repulsion = 15524.654409 eV Total energy + Delta-G solvation = -2506.289781 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.42189 -38.17797 -34.68027 -34.02736 -33.05322 -29.33275 -27.91944 -27.26563 -25.66827 -23.60817 -22.66476 -21.22775 -20.79367 -20.47840 -17.93553 -17.06097 -16.68436 -15.95202 -15.54289 -15.39826 -14.86924 -14.62006 -14.08849 -13.92714 -13.61060 -13.52220 -13.20259 -12.92442 -12.74980 -12.72385 -12.44430 -12.20845 -12.06820 -11.98542 -11.91753 -11.79497 -11.51464 -11.40864 -11.24475 -11.12861 -10.68703 -10.23372 -9.95860 -9.00623 -7.91348 -5.97970 1.44221 1.44831 1.52551 2.49228 3.07068 3.25045 3.75061 3.80709 3.99843 4.03464 4.25153 4.39389 4.41278 4.53234 4.58053 4.63402 4.66512 4.74196 4.76897 4.84160 4.84817 4.94699 5.03539 5.11032 5.16848 5.24215 5.25572 5.26688 5.27978 5.32289 5.41335 5.47887 5.54683 5.56372 5.70698 6.01744 6.20885 6.31410 6.44610 6.68272 7.06635 7.57922 9.03380 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.008314 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.098430 B = 3367.194558 C = 3549.659586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.058 3.942 4 H 0.046 0.954 5 C -0.101 4.101 6 C -0.100 4.100 7 H 0.084 0.916 8 C -0.135 4.135 9 C 0.053 3.947 10 N -0.506 5.506 11 C 0.105 3.895 12 C 0.021 3.979 13 C -0.453 4.453 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.910 5.910 17 Si 0.952 3.048 18 H -0.275 1.275 19 H -0.291 1.291 20 H -0.275 1.275 21 C -0.191 4.191 22 C -0.194 4.194 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.017 0.983 37 H 0.252 0.748 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.089 4.054 5.226 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C -0.050 4.050 4 H 0.064 0.936 5 C -0.139 4.139 6 C -0.119 4.119 7 H 0.102 0.898 8 C -0.192 4.192 9 C -0.075 4.075 10 N -0.229 5.229 11 C -0.023 4.023 12 C 0.020 3.980 13 C -0.491 4.491 14 H 0.085 0.915 15 C -0.195 4.195 16 N -0.551 5.551 17 Si 0.779 3.221 18 H -0.200 1.200 19 H -0.217 1.217 20 H -0.201 1.201 21 C -0.229 4.229 22 C -0.232 4.232 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.646 3.605 5.468 15.136 hybrid contribution 0.936 0.136 -0.361 1.012 sum -12.710 3.740 5.106 14.199 Atomic orbital electron populations 1.21697 0.93676 1.02076 1.02318 1.21379 0.96505 0.95017 1.01477 1.22922 0.87851 0.96742 0.97469 0.93610 1.22572 0.98665 0.96742 0.95945 1.22030 0.95188 0.99019 0.95692 0.89801 1.21757 1.00796 1.01314 0.95352 1.22762 0.98785 0.89179 0.96753 1.64506 1.09882 1.31261 1.17301 1.21571 0.94680 0.97635 0.88442 1.19128 0.89615 0.97239 0.92026 1.20820 0.92536 1.28695 1.07030 0.91538 1.25745 0.97806 0.97772 0.98199 1.70177 1.04374 1.46793 1.33714 0.85706 0.76645 0.79487 0.80258 1.20041 1.21696 1.20096 1.22699 1.02778 0.90424 1.06953 1.22714 1.04033 1.01626 0.94835 0.92132 0.91547 0.92585 0.93738 0.92406 0.91052 0.89066 0.92970 0.90766 0.93771 0.95743 0.92900 0.92129 0.96467 0.93852 0.92821 0.90320 0.90009 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.74 71.98 0.70 -2.11 16 2 C -0.11 -2.93 5.68 30.59 0.17 -2.76 16 3 C 0.06 1.71 2.28 45.26 0.10 1.82 16 4 H 0.05 1.32 8.02 -2.39 -0.02 1.30 16 5 C -0.10 -2.48 5.54 31.80 0.18 -2.31 16 6 C -0.10 -2.67 3.59 -9.91 -0.04 -2.71 16 7 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 8 C -0.13 -3.32 8.89 71.98 0.64 -2.68 16 9 C 0.05 1.94 6.02 86.44 0.52 2.46 16 10 N -0.51 -19.41 3.75 -858.29 -3.22 -22.64 16 11 C 0.10 4.44 4.90 86.30 0.42 4.86 16 12 C 0.02 1.05 2.15 -52.93 -0.11 0.93 16 13 C -0.45 -25.14 8.70 25.60 0.22 -24.91 16 14 H 0.07 3.72 7.22 -2.91 -0.02 3.70 16 15 C 0.00 0.10 5.28 84.66 0.45 0.54 16 16 N -0.91 -52.99 8.59 21.45 0.18 -52.81 16 17 Si 0.95 45.19 29.54 68.60 2.03 47.22 16 18 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 C -0.19 -9.84 9.31 30.62 0.29 -9.56 16 22 C -0.19 -9.99 9.39 30.62 0.29 -9.70 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.15 7.83 -2.39 -0.02 1.13 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.04 1.39 7.17 -2.39 -0.02 1.37 16 27 H 0.06 1.71 7.99 -2.38 -0.02 1.69 16 28 H 0.07 1.80 7.66 -2.39 -0.02 1.79 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.23 8.13 -2.39 -0.02 1.21 16 33 H 0.02 0.90 7.47 -2.39 -0.02 0.89 16 34 H 0.05 2.23 7.68 -2.39 -0.02 2.22 16 35 H 0.06 2.50 7.05 -2.38 -0.02 2.48 16 36 H 0.02 0.70 7.40 -2.39 -0.02 0.69 16 37 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.05 2.52 8.05 -2.39 -0.02 2.50 16 39 H 0.08 4.55 6.28 -2.39 -0.01 4.54 16 40 H 0.08 4.71 6.28 -2.39 -0.02 4.69 16 41 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -60.43 314.20 3.78 -56.65 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.96 Total: 17.68 kcal Atomic # 6 Polarization: -49.95 SS G_CDS: 3.83 Total: -46.12 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -3.04 Total: -75.44 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -60.43 3.78 -56.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399644267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.979 kcal (2) G-P(sol) polarization free energy of solvation -60.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds