Wall clock time and date at job start Sun Mar 29 2020 22:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47453 * 2 1 4 4 H 1.09003 * 109.91271 * 55.51343 * 3 2 1 5 5 C 1.53994 * 110.08533 * 176.72896 * 3 2 1 6 6 C 1.54595 * 105.14189 * 120.66568 * 5 3 2 7 7 H 1.08992 * 110.72392 * 263.59625 * 6 5 3 8 8 C 1.53000 * 110.72032 * 140.31527 * 6 5 3 9 9 C 1.54936 * 102.92013 * 21.96147 * 6 5 3 10 10 N 1.47908 * 109.91380 * 294.41550 * 3 2 1 11 11 C 1.46901 * 111.00074 * 94.60972 * 10 3 2 12 12 C 1.52995 * 109.47272 * 77.58110 * 11 10 3 13 13 C 1.50695 * 115.55290 * 304.21688 * 12 11 10 14 14 H 1.08006 * 119.99734 * 94.30016 * 13 12 11 15 15 C 1.37874 * 120.00797 * 274.30236 * 13 12 11 16 16 N 1.31518 * 119.99583 * 6.86145 * 15 13 12 17 17 Si 1.86798 * 120.00468 * 187.14280 * 15 13 12 18 18 H 1.48503 * 109.47194 * 179.72284 * 17 15 13 19 19 H 1.48502 * 109.46778 * 299.72367 * 17 15 13 20 20 H 1.48497 * 109.47444 * 59.71853 * 17 15 13 21 21 C 1.53001 * 117.49559 * 89.89683 * 12 11 10 22 22 C 1.53008 * 117.49449 * 158.55465 * 12 11 10 23 23 H 1.09005 * 109.47663 * 186.42355 * 1 2 3 24 24 H 1.09000 * 109.47186 * 306.43182 * 1 2 3 25 25 H 1.09002 * 109.46483 * 66.43025 * 1 2 3 26 26 H 1.08996 * 109.46998 * 239.99257 * 2 1 3 27 27 H 1.09009 * 109.46808 * 119.99571 * 2 1 3 28 28 H 1.09000 * 110.30682 * 239.58460 * 5 3 2 29 29 H 1.09000 * 110.30563 * 1.74772 * 5 3 2 30 30 H 1.09001 * 109.47453 * 60.00487 * 8 6 5 31 31 H 1.09005 * 109.46751 * 179.97438 * 8 6 5 32 32 H 1.09001 * 109.47487 * 300.00026 * 8 6 5 33 33 H 1.09000 * 110.66271 * 204.14943 * 9 6 5 34 34 H 1.08999 * 110.67034 * 81.01998 * 9 6 5 35 35 H 1.09010 * 109.46555 * 317.58360 * 11 10 3 36 36 H 1.09000 * 109.46815 * 197.58802 * 11 10 3 37 37 H 0.96997 * 119.99682 * 355.79152 * 16 15 13 38 38 H 1.09000 * 117.49326 * 214.99844 * 21 12 11 39 39 H 1.08993 * 117.50008 * 0.02562 * 21 12 11 40 40 H 1.08993 * 117.49824 * 359.97438 * 22 12 11 41 41 H 1.08993 * 117.49811 * 144.97549 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6167 1.9859 0.8447 5 6 3.5777 1.4596 0.0825 6 6 4.0422 2.2006 -1.1923 7 1 4.3031 1.4911 -1.9774 8 6 5.2215 3.1247 -0.8818 9 6 2.7910 3.0233 -1.5901 10 7 1.6661 2.1090 -1.2663 11 6 0.4086 2.8538 -1.1178 12 6 0.6778 4.1674 -0.3810 13 6 1.3462 4.0336 0.9630 14 1 2.4204 4.1141 1.0422 15 6 0.5868 3.8086 2.0915 16 7 -0.7030 3.5764 1.9805 17 14 1.3881 3.8415 3.7785 18 1 0.3618 3.5787 4.8192 19 1 2.4411 2.7965 3.8467 20 1 1.9985 5.1751 4.0108 21 6 1.0310 5.3923 -1.2271 22 6 -0.3407 5.2960 -0.5543 23 1 -0.3634 -1.0212 0.1150 24 1 -0.3633 0.6103 0.8268 25 1 -0.3632 0.4109 -0.9420 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9027 1.9980 0.9728 29 1 3.9674 0.4417 0.0917 30 1 6.0527 2.5355 -0.4946 31 1 5.5323 3.6356 -1.7932 32 1 4.9199 3.8610 -0.1368 33 1 2.8050 3.2537 -2.6554 34 1 2.7270 3.9366 -0.9987 35 1 -0.3024 2.2561 -0.5470 36 1 -0.0053 3.0680 -2.1031 37 1 -1.1312 3.6236 1.1114 38 1 1.7469 6.1014 -0.8115 39 1 1.0711 5.2624 -2.3085 40 1 -1.2021 5.1028 -1.1934 41 1 -0.5274 5.9415 0.3039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399644270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:00 Heat of formation + Delta-G solvation = 12.133271 kcal Electronic energy + Delta-G solvation = -18891.703267 eV Core-core repulsion = 16385.578631 eV Total energy + Delta-G solvation = -2506.124636 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.25563 -36.24035 -33.30558 -32.05414 -31.36922 -28.26076 -26.12801 -25.07830 -23.93076 -21.99462 -21.36583 -19.85683 -19.27345 -18.71409 -16.60112 -15.05133 -14.76991 -14.43864 -13.78597 -13.55950 -13.37619 -12.95830 -12.72671 -12.50408 -12.04634 -11.92217 -11.73447 -11.49286 -11.40638 -11.03112 -10.82754 -10.61211 -10.42004 -10.21583 -10.19428 -10.07560 -10.02804 -9.68343 -9.58612 -9.36323 -8.53690 -8.44135 -8.31937 -7.25122 -6.37838 -4.06533 3.37472 3.39494 3.57001 4.44261 4.90279 5.17290 5.24414 5.31639 5.42352 5.61174 5.73042 5.92344 5.95141 6.00411 6.09433 6.13157 6.15577 6.23605 6.30101 6.34217 6.44635 6.51522 6.53542 6.54254 6.59607 6.66077 6.69963 6.76671 6.85294 6.89449 6.97508 7.02821 7.08773 7.24462 7.30610 7.52358 7.93777 8.08487 8.28869 8.36480 8.82799 9.59549 11.00166 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.012297 C = 0.011698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.961509 B = 2276.475749 C = 2392.951331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.103 4.103 3 C 0.044 3.956 4 H 0.117 0.883 5 C -0.114 4.114 6 C -0.096 4.096 7 H 0.065 0.935 8 C -0.140 4.140 9 C 0.033 3.967 10 N -0.501 5.501 11 C 0.073 3.927 12 C -0.001 4.001 13 C -0.562 4.562 14 H 0.053 0.947 15 C 0.030 3.970 16 N -0.899 5.899 17 Si 1.054 2.946 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.289 1.289 21 C -0.196 4.196 22 C -0.183 4.183 23 H 0.036 0.964 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.277 0.723 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 -3.033 -4.088 7.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 C -0.064 4.064 4 H 0.135 0.865 5 C -0.153 4.153 6 C -0.115 4.115 7 H 0.084 0.916 8 C -0.197 4.197 9 C -0.095 4.095 10 N -0.223 5.223 11 C -0.056 4.056 12 C -0.002 4.002 13 C -0.600 4.600 14 H 0.071 0.929 15 C -0.177 4.177 16 N -0.534 5.534 17 Si 0.882 3.118 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.215 1.215 21 C -0.234 4.234 22 C -0.221 4.221 23 H 0.055 0.945 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.537 -3.670 -2.882 7.241 hybrid contribution 0.373 0.991 -1.121 1.542 sum 5.910 -2.679 -4.003 7.624 Atomic orbital electron populations 1.21810 0.96391 0.99910 1.02480 1.21480 0.95858 0.96877 0.99850 1.22884 0.93550 0.94342 0.95654 0.86541 1.22405 0.96398 0.99057 0.97397 1.21999 0.94969 0.97032 0.97498 0.91635 1.21751 0.97523 0.99402 1.01054 1.23423 0.89462 0.97069 0.99503 1.64925 1.02235 1.25455 1.29699 1.22023 0.92248 0.94441 0.96886 1.19800 0.98047 0.86752 0.95614 1.21143 0.94061 1.54495 0.90263 0.92929 1.25610 0.95863 0.93526 1.02682 1.70726 1.10579 1.42884 1.29163 0.83749 0.75406 0.76647 0.75958 1.20752 1.21222 1.21523 1.22912 0.99100 1.04947 0.96413 1.22751 0.91338 1.06328 1.01673 0.94492 0.92015 0.92506 0.93054 0.93200 0.91969 0.92839 0.93354 0.93356 0.92375 0.92835 0.89866 0.90604 0.94216 0.91181 0.90558 0.91677 0.91782 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.48 37.16 0.32 -2.43 16 2 C -0.10 -1.87 5.41 -26.74 -0.14 -2.01 16 3 C 0.04 0.88 1.97 -66.64 -0.13 0.75 16 4 H 0.12 2.77 4.39 -51.93 -0.23 2.54 16 5 C -0.11 -2.06 6.15 -25.37 -0.16 -2.22 16 6 C -0.10 -1.62 3.66 -88.76 -0.32 -1.94 16 7 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 8 C -0.14 -2.07 9.16 37.16 0.34 -1.73 16 9 C 0.03 0.64 5.10 -1.90 -0.01 0.63 16 10 N -0.50 -10.15 5.02 -222.57 -1.12 -11.27 16 11 C 0.07 1.59 4.99 -3.83 -0.02 1.57 16 12 C 0.00 -0.01 0.18 -155.66 -0.03 -0.04 16 13 C -0.56 -14.05 5.04 -34.44 -0.17 -14.22 16 14 H 0.05 1.36 7.27 -52.48 -0.38 0.97 16 15 C 0.03 0.78 4.72 -17.82 -0.08 0.69 16 16 N -0.90 -24.85 13.56 55.43 0.75 -24.10 16 17 Si 1.05 23.88 29.91 -169.99 -5.08 18.80 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.20 -4.16 7.96 -26.69 -0.21 -4.37 16 22 C -0.18 -4.12 8.67 -26.69 -0.23 -4.35 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 1.30 7.87 -51.93 -0.41 0.89 16 25 H 0.06 1.07 6.63 -51.93 -0.34 0.72 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.06 1.17 7.85 -51.93 -0.41 0.76 16 29 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.76 3.73 -51.93 -0.19 1.56 16 35 H 0.08 1.76 5.00 -51.92 -0.26 1.50 16 36 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.28 7.65 6.17 -40.82 -0.25 7.40 16 38 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 LS Contribution 303.66 15.07 4.58 4.58 Total: -1.00 -25.72 303.66 -8.89 -34.62 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.16 Total: 7.08 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: -0.86 Total: -29.70 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.36 Total: -35.37 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.08 Total: 18.80 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -25.72 -8.89 -34.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399644270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.750 kcal (2) G-P(sol) polarization free energy of solvation -25.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds