Wall clock time and date at job start Sun Mar 29 2020 22:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47453 * 2 1 4 4 H 1.09003 * 109.91271 * 55.51343 * 3 2 1 5 5 C 1.53994 * 110.08533 * 176.72896 * 3 2 1 6 6 C 1.54595 * 105.14189 * 120.66568 * 5 3 2 7 7 H 1.08992 * 110.72392 * 263.59625 * 6 5 3 8 8 C 1.53000 * 110.72032 * 140.31527 * 6 5 3 9 9 C 1.54936 * 102.92013 * 21.96147 * 6 5 3 10 10 N 1.47908 * 109.91380 * 294.41550 * 3 2 1 11 11 C 1.46901 * 111.00074 * 94.60972 * 10 3 2 12 12 C 1.52995 * 109.47272 * 77.58110 * 11 10 3 13 13 C 1.50695 * 115.55290 * 304.21688 * 12 11 10 14 14 H 1.08006 * 119.99734 * 94.30016 * 13 12 11 15 15 C 1.37874 * 120.00797 * 274.30236 * 13 12 11 16 16 N 1.31518 * 119.99583 * 6.86145 * 15 13 12 17 17 Si 1.86798 * 120.00468 * 187.14280 * 15 13 12 18 18 H 1.48503 * 109.47194 * 179.72284 * 17 15 13 19 19 H 1.48502 * 109.46778 * 299.72367 * 17 15 13 20 20 H 1.48497 * 109.47444 * 59.71853 * 17 15 13 21 21 C 1.53001 * 117.49559 * 89.89683 * 12 11 10 22 22 C 1.53008 * 117.49449 * 158.55465 * 12 11 10 23 23 H 1.09005 * 109.47663 * 186.42355 * 1 2 3 24 24 H 1.09000 * 109.47186 * 306.43182 * 1 2 3 25 25 H 1.09002 * 109.46483 * 66.43025 * 1 2 3 26 26 H 1.08996 * 109.46998 * 239.99257 * 2 1 3 27 27 H 1.09009 * 109.46808 * 119.99571 * 2 1 3 28 28 H 1.09000 * 110.30682 * 239.58460 * 5 3 2 29 29 H 1.09000 * 110.30563 * 1.74772 * 5 3 2 30 30 H 1.09001 * 109.47453 * 60.00487 * 8 6 5 31 31 H 1.09005 * 109.46751 * 179.97438 * 8 6 5 32 32 H 1.09001 * 109.47487 * 300.00026 * 8 6 5 33 33 H 1.09000 * 110.66271 * 204.14943 * 9 6 5 34 34 H 1.08999 * 110.67034 * 81.01998 * 9 6 5 35 35 H 1.09010 * 109.46555 * 317.58360 * 11 10 3 36 36 H 1.09000 * 109.46815 * 197.58802 * 11 10 3 37 37 H 0.96997 * 119.99682 * 355.79152 * 16 15 13 38 38 H 1.09000 * 117.49326 * 214.99844 * 21 12 11 39 39 H 1.08993 * 117.50008 * 0.02562 * 21 12 11 40 40 H 1.08993 * 117.49824 * 359.97438 * 22 12 11 41 41 H 1.08993 * 117.49811 * 144.97549 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6167 1.9859 0.8447 5 6 3.5777 1.4596 0.0825 6 6 4.0422 2.2006 -1.1923 7 1 4.3031 1.4911 -1.9774 8 6 5.2215 3.1247 -0.8818 9 6 2.7910 3.0233 -1.5901 10 7 1.6661 2.1090 -1.2663 11 6 0.4086 2.8538 -1.1178 12 6 0.6778 4.1674 -0.3810 13 6 1.3462 4.0336 0.9630 14 1 2.4204 4.1141 1.0422 15 6 0.5868 3.8086 2.0915 16 7 -0.7030 3.5764 1.9805 17 14 1.3881 3.8415 3.7785 18 1 0.3618 3.5787 4.8192 19 1 2.4411 2.7965 3.8467 20 1 1.9985 5.1751 4.0108 21 6 1.0310 5.3923 -1.2271 22 6 -0.3407 5.2960 -0.5543 23 1 -0.3634 -1.0212 0.1150 24 1 -0.3633 0.6103 0.8268 25 1 -0.3632 0.4109 -0.9420 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9027 1.9980 0.9728 29 1 3.9674 0.4417 0.0917 30 1 6.0527 2.5355 -0.4946 31 1 5.5323 3.6356 -1.7932 32 1 4.9199 3.8610 -0.1368 33 1 2.8050 3.2537 -2.6554 34 1 2.7270 3.9366 -0.9987 35 1 -0.3024 2.2561 -0.5470 36 1 -0.0053 3.0680 -2.1031 37 1 -1.1312 3.6236 1.1114 38 1 1.7469 6.1014 -0.8115 39 1 1.0711 5.2624 -2.3085 40 1 -1.2021 5.1028 -1.1934 41 1 -0.5274 5.9415 0.3039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399644270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:00 Heat of formation + Delta-G solvation = -1.010555 kcal Electronic energy + Delta-G solvation = -18892.273226 eV Core-core repulsion = 16385.578631 eV Total energy + Delta-G solvation = -2506.694595 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.87102 -37.94083 -34.74185 -33.99081 -32.95740 -29.70536 -27.72245 -27.01949 -25.40561 -23.58089 -23.10296 -21.57927 -20.75476 -20.36718 -18.49185 -16.53694 -16.34648 -16.11271 -15.64063 -15.16229 -15.05440 -14.59468 -14.22750 -13.98165 -13.64336 -13.54310 -13.27080 -13.00879 -12.90805 -12.69067 -12.59310 -12.26897 -12.08514 -11.99862 -11.79541 -11.63533 -11.43945 -11.20895 -11.08718 -10.98942 -10.46644 -10.34955 -10.11627 -8.94554 -8.42939 -6.09083 1.52370 1.56692 1.74676 2.57060 3.20650 3.30707 3.54914 3.85169 3.99649 4.18398 4.24011 4.31045 4.42919 4.46221 4.51489 4.59684 4.68525 4.76999 4.83322 4.84260 4.87147 4.94243 5.03759 5.06710 5.08923 5.10080 5.18862 5.23309 5.30916 5.37625 5.43101 5.45486 5.48308 5.56096 5.63311 5.86060 6.19356 6.30257 6.42038 6.50976 6.79661 7.60255 8.95387 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.017366 B = 0.012297 C = 0.011698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.961509 B = 2276.475749 C = 2392.951331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 C 0.039 3.961 4 H 0.078 0.922 5 C -0.113 4.113 6 C -0.089 4.089 7 H 0.082 0.918 8 C -0.134 4.134 9 C 0.030 3.970 10 N -0.497 5.497 11 C 0.082 3.918 12 C -0.016 4.016 13 C -0.547 4.547 14 H 0.042 0.958 15 C -0.009 4.009 16 N -0.928 5.928 17 Si 1.086 2.914 18 H -0.290 1.290 19 H -0.271 1.271 20 H -0.280 1.280 21 C -0.172 4.172 22 C -0.189 4.189 23 H 0.060 0.940 24 H 0.027 0.973 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.266 0.734 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.751 -3.867 -5.160 10.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.137 4.137 3 C -0.069 4.069 4 H 0.096 0.904 5 C -0.151 4.151 6 C -0.108 4.108 7 H 0.100 0.900 8 C -0.192 4.192 9 C -0.098 4.098 10 N -0.219 5.219 11 C -0.047 4.047 12 C -0.017 4.017 13 C -0.585 4.585 14 H 0.060 0.940 15 C -0.211 4.211 16 N -0.564 5.564 17 Si 0.912 3.088 18 H -0.216 1.216 19 H -0.196 1.196 20 H -0.206 1.206 21 C -0.210 4.210 22 C -0.227 4.227 23 H 0.079 0.921 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.355 -4.498 -3.965 9.489 hybrid contribution -0.179 1.260 -0.829 1.518 sum 7.176 -3.239 -4.794 9.218 Atomic orbital electron populations 1.21703 0.96878 1.00563 1.00572 1.21461 0.95333 0.95830 1.01048 1.22812 0.95053 0.94967 0.94070 0.90392 1.22396 0.94757 1.00395 0.97580 1.22000 0.94538 0.97109 0.97104 0.90009 1.21702 0.97226 0.98905 1.01370 1.23447 0.90223 0.96409 0.99672 1.64982 1.02003 1.25335 1.29557 1.21858 0.92851 0.93545 0.96479 1.19843 0.98530 0.87807 0.95539 1.21191 0.93378 1.52738 0.91225 0.94029 1.26515 0.95773 0.93344 1.05441 1.70815 1.11521 1.45545 1.28532 0.83310 0.75011 0.77425 0.73098 1.21630 1.19627 1.20563 1.22870 0.97569 1.03258 0.97265 1.22679 0.92544 1.06044 1.01451 0.92065 0.95417 0.93285 0.91521 0.92101 0.93287 0.90671 0.91462 0.91762 0.94274 0.91829 0.92046 0.92538 0.93608 0.92295 0.90877 0.89568 0.90614 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 8.48 71.98 0.61 -4.49 16 2 C -0.10 -3.43 5.41 30.59 0.17 -3.27 16 3 C 0.04 1.54 1.97 45.05 0.09 1.63 16 4 H 0.08 3.74 4.39 -2.39 -0.01 3.73 16 5 C -0.11 -3.84 6.15 31.47 0.19 -3.65 16 6 C -0.09 -2.73 3.66 -9.59 -0.04 -2.77 16 7 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 8 C -0.13 -3.61 9.16 71.98 0.66 -2.95 16 9 C 0.03 1.10 5.10 86.65 0.44 1.54 16 10 N -0.50 -19.51 5.02 -858.07 -4.30 -23.81 16 11 C 0.08 3.55 4.99 86.30 0.43 3.98 16 12 C -0.02 -0.72 0.18 -52.93 -0.01 -0.73 16 13 C -0.55 -27.67 5.04 25.60 0.13 -27.54 16 14 H 0.04 2.16 7.27 -2.91 -0.02 2.14 16 15 C -0.01 -0.50 4.72 84.65 0.40 -0.10 16 16 N -0.93 -52.79 13.56 21.45 0.29 -52.50 16 17 Si 1.09 48.68 29.91 68.60 2.05 50.73 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 C -0.17 -7.13 7.96 30.62 0.24 -6.89 16 22 C -0.19 -8.57 8.67 30.62 0.27 -8.31 16 23 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.03 1.17 7.87 -2.39 -0.02 1.15 16 25 H 0.05 1.83 6.63 -2.39 -0.02 1.81 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.05 1.77 7.85 -2.39 -0.02 1.75 16 29 H 0.07 2.21 7.69 -2.39 -0.02 2.19 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.04 1.19 8.10 -2.39 -0.02 1.17 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 2.52 3.73 -2.39 -0.01 2.51 16 35 H 0.06 2.67 5.00 -2.38 -0.01 2.66 16 36 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 37 H 0.27 15.27 6.17 -92.71 -0.57 14.70 16 38 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 39 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -55.22 303.66 2.79 -52.42 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 1.17 Total: 26.70 kcal Atomic # 6 Polarization: -57.13 SS G_CDS: 3.58 Total: -53.54 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -4.01 Total: -76.31 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.05 Total: 50.73 kcal Total: -55.22 2.79 -52.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399644270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.411 kcal (2) G-P(sol) polarization free energy of solvation -55.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds