Wall clock time and date at job start Sun Mar 29 2020 22:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 C 1.53007 * 109.47154 * 119.99732 * 2 1 3 5 5 N 1.46894 * 109.47257 * 172.18267 * 4 2 1 6 6 C 1.46899 * 111.00302 * 314.51335 * 5 4 2 7 7 C 1.50701 * 109.46957 * 295.40209 * 6 5 4 8 8 H 1.07999 * 119.99957 * 4.76007 * 7 6 5 9 9 C 1.37880 * 119.99719 * 184.76290 * 7 6 5 10 10 N 1.31510 * 120.00003 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99655 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47235 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47253 * 119.99952 * 11 9 7 14 14 H 1.48497 * 109.47451 * 240.00174 * 11 9 7 15 15 C 1.46910 * 110.99987 * 78.46723 * 5 4 2 16 16 C 1.50693 * 109.47076 * 78.48252 * 15 5 4 17 17 C 1.30527 * 124.44565 * 96.14820 * 16 15 5 18 18 C 1.51105 * 111.10543 * 180.26280 * 17 16 15 19 19 C 1.54800 * 104.64320 * 343.20227 * 18 17 16 20 20 C 1.51106 * 124.45218 * 276.17433 * 16 15 5 21 21 H 1.08994 * 109.47283 * 300.00085 * 1 2 3 22 22 H 1.08999 * 109.47028 * 60.00499 * 1 2 3 23 23 H 1.08999 * 109.46802 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47544 * 239.99752 * 2 1 3 25 25 H 1.09001 * 109.47289 * 78.41751 * 3 2 1 26 26 H 1.09005 * 109.46943 * 198.41560 * 3 2 1 27 27 H 1.08995 * 109.47016 * 318.41705 * 3 2 1 28 28 H 1.08997 * 109.46814 * 52.18098 * 4 2 1 29 29 H 1.09004 * 109.46673 * 292.18372 * 4 2 1 30 30 H 1.09003 * 109.46930 * 55.39695 * 6 5 4 31 31 H 1.08998 * 109.47354 * 175.39795 * 6 5 4 32 32 H 0.96998 * 119.99457 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.46522 * 318.48563 * 15 5 4 34 34 H 1.08998 * 109.46847 * 198.48551 * 15 5 4 35 35 H 1.07994 * 124.45164 * 0.02562 * 17 16 15 36 36 H 1.09005 * 110.38662 * 102.13252 * 18 17 16 37 37 H 1.08997 * 110.39259 * 224.51044 * 18 17 16 38 38 H 1.08993 * 111.25229 * 266.86937 * 19 18 17 39 39 H 1.09005 * 110.89362 * 142.88124 * 19 18 17 40 40 H 1.09000 * 110.38548 * 315.23423 * 20 16 15 41 41 H 1.09000 * 110.38345 * 77.60404 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4968 -0.8865 1.1589 6 6 3.8908 -1.3646 -0.1731 7 6 3.3280 -2.7443 -0.3983 8 1 2.6739 -3.1875 0.3379 9 6 3.6484 -3.4408 -1.5443 10 7 4.4454 -2.9013 -2.4405 11 14 2.9514 -5.1513 -1.8232 12 1 2.0891 -5.5278 -0.6743 13 1 2.1453 -5.1601 -3.0703 14 1 4.0652 -6.1256 -1.9468 15 6 4.1905 0.3639 1.4959 16 6 4.2174 0.5357 2.9927 17 6 5.2176 0.1916 3.7575 18 6 4.9215 0.4921 5.2085 19 6 3.7303 1.4798 5.1685 20 6 3.0898 1.1285 3.8055 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.9665 1.8539 1.0067 26 1 3.0804 1.4600 -0.3247 27 1 1.4363 2.0412 -0.6820 28 1 1.5670 -1.7005 1.3220 29 1 1.7952 -0.1329 2.1338 30 1 3.5026 -0.6855 -0.9323 31 1 4.9782 -1.4003 -0.2394 32 1 4.6704 -3.3912 -3.2469 33 1 3.6646 1.2044 1.0431 34 1 5.2114 0.3267 1.1160 35 1 6.1346 -0.2533 3.4007 36 1 4.6439 -0.4204 5.7363 37 1 5.7844 0.9588 5.6834 38 1 4.0739 2.5140 5.1843 39 1 3.0375 1.2868 5.9876 40 1 2.7060 2.0274 3.3233 41 1 2.2922 0.3975 3.9379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401035520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:04 Heat of formation + Delta-G solvation = 15.746544 kcal Electronic energy + Delta-G solvation = -17772.106077 eV Core-core repulsion = 15266.138124 eV Total energy + Delta-G solvation = -2505.967953 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.95626 -37.32448 -33.30732 -32.39623 -29.80332 -28.22697 -27.05119 -26.76092 -25.54784 -23.18508 -21.16506 -20.48340 -18.91427 -17.65325 -16.20188 -15.64253 -15.10232 -14.97722 -14.78758 -14.12340 -13.69476 -13.13715 -12.61402 -12.40988 -12.17618 -11.94269 -11.90636 -11.54780 -11.25610 -11.17209 -11.02374 -10.98009 -10.92270 -10.84066 -10.72066 -10.41355 -10.40539 -9.99879 -9.77503 -9.58540 -9.11686 -8.41397 -8.25041 -6.95551 -5.99169 -3.99293 2.65578 3.32563 3.40254 3.45184 4.46624 4.82866 4.90117 5.13878 5.22731 5.37826 5.48373 5.51295 5.59693 5.67920 5.70010 5.79973 5.91557 5.95174 5.96923 6.04782 6.15904 6.16362 6.22451 6.27666 6.31506 6.34452 6.36749 6.47422 6.61095 6.68752 6.86998 7.05152 7.06651 7.37301 7.41834 7.48968 7.86986 8.16286 8.32166 8.63647 9.08811 9.64620 11.11631 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.007134 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.581253 B = 3923.762546 C = 4519.828430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 C -0.147 4.147 4 C 0.074 3.926 5 N -0.527 5.527 6 C 0.187 3.813 7 C -0.499 4.499 8 H 0.061 0.939 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.894 3.106 12 H -0.273 1.273 13 H -0.286 1.286 14 H -0.285 1.285 15 C 0.067 3.933 16 C -0.106 4.106 17 C -0.176 4.176 18 C -0.094 4.094 19 C -0.125 4.125 20 C -0.093 4.093 21 H 0.043 0.957 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.101 0.899 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.001 0.999 31 H 0.028 0.972 32 H 0.259 0.741 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 9.133 10.139 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C -0.204 4.204 4 C -0.054 4.054 5 N -0.250 5.250 6 C 0.062 3.938 7 C -0.538 4.538 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.722 3.278 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.211 1.211 15 C -0.061 4.061 16 C -0.107 4.107 17 C -0.195 4.195 18 C -0.131 4.131 19 C -0.162 4.162 20 C -0.130 4.130 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.119 0.881 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.018 0.982 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.182 8.729 10.310 13.879 hybrid contribution -0.468 -0.476 -0.920 1.137 sum -3.650 8.252 9.390 13.023 Atomic orbital electron populations 1.21733 0.96226 1.01274 1.00252 1.21902 0.95159 0.95917 1.03183 1.22122 1.00858 0.96957 1.00415 1.22094 0.89228 0.99368 0.94740 1.62349 1.04716 1.25300 1.32610 1.19888 0.96295 0.94972 0.82675 1.21183 1.28439 1.00382 1.03797 0.92038 1.24960 0.95396 0.98086 0.96158 1.69964 1.36163 1.37874 1.09968 0.86504 0.78822 0.84527 0.77951 1.19731 1.21205 1.21106 1.21423 0.99790 0.94198 0.90663 1.22012 0.94776 0.98247 0.95660 1.22973 0.99761 1.02491 0.94269 1.21301 0.97589 0.98739 0.95483 1.22464 0.97443 0.99068 0.97274 1.21356 0.97473 0.99919 0.94240 0.93810 0.93621 0.92782 0.88139 0.93280 0.92127 0.93734 0.91218 0.92922 0.98176 0.95404 0.93099 0.91948 0.91490 0.86278 0.91196 0.92030 0.91570 0.91533 0.91885 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.11 37.16 0.34 -1.78 16 2 C -0.14 -2.58 2.39 -90.62 -0.22 -2.80 16 3 C -0.15 -2.35 7.55 37.16 0.28 -2.07 16 4 C 0.07 1.43 4.54 -3.82 -0.02 1.41 16 5 N -0.53 -11.30 4.62 -237.51 -1.10 -12.40 16 6 C 0.19 4.76 4.17 -4.98 -0.02 4.74 16 7 C -0.50 -13.88 8.45 -34.44 -0.29 -14.17 16 8 H 0.06 1.72 6.91 -52.49 -0.36 1.36 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 11 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.07 1.23 5.02 -4.97 -0.02 1.20 16 16 C -0.11 -1.71 5.45 -100.74 -0.55 -2.26 16 17 C -0.18 -2.69 10.58 -35.70 -0.38 -3.07 16 18 C -0.09 -1.17 6.82 -26.74 -0.18 -1.36 16 19 C -0.12 -1.44 7.20 -24.92 -0.18 -1.62 16 20 C -0.09 -1.26 5.75 -26.83 -0.15 -1.42 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.10 2.23 5.51 -51.93 -0.29 1.95 16 25 H 0.05 0.72 7.33 -51.93 -0.38 0.34 16 26 H 0.06 1.04 5.95 -51.93 -0.31 0.73 16 27 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 28 H 0.07 1.46 7.16 -51.93 -0.37 1.08 16 29 H 0.05 0.90 5.24 -51.93 -0.27 0.63 16 30 H 0.00 0.02 5.31 -51.93 -0.28 -0.26 16 31 H 0.03 0.78 7.85 -51.93 -0.41 0.38 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.06 1.08 3.20 -51.93 -0.17 0.91 16 34 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16 35 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.06 7.03 -51.93 -0.36 0.70 16 LS Contribution 309.89 15.07 4.67 4.67 Total: -1.00 -28.86 309.89 -9.15 -38.02 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.95 Total: 0.59 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -1.49 Total: -21.74 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: -0.36 Total: -38.29 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.86 -9.15 -38.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401035520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.763 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds