Wall clock time and date at job start Sun Mar 29 2020 22:28:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53000 * 109.46965 * 2 1
4 4 C 1.53007 * 109.47154 * 119.99732 * 2 1 3
5 5 N 1.46894 * 109.47257 * 172.18267 * 4 2 1
6 6 C 1.46899 * 111.00302 * 314.51335 * 5 4 2
7 7 C 1.50701 * 109.46957 * 295.40209 * 6 5 4
8 8 H 1.07999 * 119.99957 * 4.76007 * 7 6 5
9 9 C 1.37880 * 119.99719 * 184.76290 * 7 6 5
10 10 N 1.31510 * 120.00003 * 0.02562 * 9 7 6
11 11 Si 1.86796 * 119.99655 * 179.97438 * 9 7 6
12 12 H 1.48502 * 109.47235 * 0.02562 * 11 9 7
13 13 H 1.48506 * 109.47253 * 119.99952 * 11 9 7
14 14 H 1.48497 * 109.47451 * 240.00174 * 11 9 7
15 15 C 1.46910 * 110.99987 * 78.46723 * 5 4 2
16 16 C 1.50693 * 109.47076 * 78.48252 * 15 5 4
17 17 C 1.30527 * 124.44565 * 96.14820 * 16 15 5
18 18 C 1.51105 * 111.10543 * 180.26280 * 17 16 15
19 19 C 1.54800 * 104.64320 * 343.20227 * 18 17 16
20 20 C 1.51106 * 124.45218 * 276.17433 * 16 15 5
21 21 H 1.08994 * 109.47283 * 300.00085 * 1 2 3
22 22 H 1.08999 * 109.47028 * 60.00499 * 1 2 3
23 23 H 1.08999 * 109.46802 * 180.02562 * 1 2 3
24 24 H 1.09002 * 109.47544 * 239.99752 * 2 1 3
25 25 H 1.09001 * 109.47289 * 78.41751 * 3 2 1
26 26 H 1.09005 * 109.46943 * 198.41560 * 3 2 1
27 27 H 1.08995 * 109.47016 * 318.41705 * 3 2 1
28 28 H 1.08997 * 109.46814 * 52.18098 * 4 2 1
29 29 H 1.09004 * 109.46673 * 292.18372 * 4 2 1
30 30 H 1.09003 * 109.46930 * 55.39695 * 6 5 4
31 31 H 1.08998 * 109.47354 * 175.39795 * 6 5 4
32 32 H 0.96998 * 119.99457 * 180.02562 * 10 9 7
33 33 H 1.08998 * 109.46522 * 318.48563 * 15 5 4
34 34 H 1.08998 * 109.46847 * 198.48551 * 15 5 4
35 35 H 1.07994 * 124.45164 * 0.02562 * 17 16 15
36 36 H 1.09005 * 110.38662 * 102.13252 * 18 17 16
37 37 H 1.08997 * 110.39259 * 224.51044 * 18 17 16
38 38 H 1.08993 * 111.25229 * 266.86937 * 19 18 17
39 39 H 1.09005 * 110.89362 * 142.88124 * 19 18 17
40 40 H 1.09000 * 110.38548 * 315.23423 * 20 16 15
41 41 H 1.09000 * 110.38345 * 77.60404 * 20 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 7 3.4968 -0.8865 1.1589
6 6 3.8908 -1.3646 -0.1731
7 6 3.3280 -2.7443 -0.3983
8 1 2.6739 -3.1875 0.3379
9 6 3.6484 -3.4408 -1.5443
10 7 4.4454 -2.9013 -2.4405
11 14 2.9514 -5.1513 -1.8232
12 1 2.0891 -5.5278 -0.6743
13 1 2.1453 -5.1601 -3.0703
14 1 4.0652 -6.1256 -1.9468
15 6 4.1905 0.3639 1.4959
16 6 4.2174 0.5357 2.9927
17 6 5.2176 0.1916 3.7575
18 6 4.9215 0.4921 5.2085
19 6 3.7303 1.4798 5.1685
20 6 3.0898 1.1285 3.8055
21 1 -0.3633 0.5138 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 1.8934 -0.5139 -0.8899
25 1 1.9665 1.8539 1.0067
26 1 3.0804 1.4600 -0.3247
27 1 1.4363 2.0412 -0.6820
28 1 1.5670 -1.7005 1.3220
29 1 1.7952 -0.1329 2.1338
30 1 3.5026 -0.6855 -0.9323
31 1 4.9782 -1.4003 -0.2394
32 1 4.6704 -3.3912 -3.2469
33 1 3.6646 1.2044 1.0431
34 1 5.2114 0.3267 1.1160
35 1 6.1346 -0.2533 3.4007
36 1 4.6439 -0.4204 5.7363
37 1 5.7844 0.9588 5.6834
38 1 4.0739 2.5140 5.1843
39 1 3.0375 1.2868 5.9876
40 1 2.7060 2.0274 3.3233
41 1 2.2922 0.3975 3.9379
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000401035520.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:28:04
Heat of formation + Delta-G solvation = 15.746544 kcal
Electronic energy + Delta-G solvation = -17772.106077 eV
Core-core repulsion = 15266.138124 eV
Total energy + Delta-G solvation = -2505.967953 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 237.179 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-38.95626 -37.32448 -33.30732 -32.39623 -29.80332 -28.22697 -27.05119 -26.76092
-25.54784 -23.18508 -21.16506 -20.48340 -18.91427 -17.65325 -16.20188 -15.64253
-15.10232 -14.97722 -14.78758 -14.12340 -13.69476 -13.13715 -12.61402 -12.40988
-12.17618 -11.94269 -11.90636 -11.54780 -11.25610 -11.17209 -11.02374 -10.98009
-10.92270 -10.84066 -10.72066 -10.41355 -10.40539 -9.99879 -9.77503 -9.58540
-9.11686 -8.41397 -8.25041 -6.95551 -5.99169 -3.99293 2.65578 3.32563
3.40254 3.45184 4.46624 4.82866 4.90117 5.13878 5.22731 5.37826
5.48373 5.51295 5.59693 5.67920 5.70010 5.79973 5.91557 5.95174
5.96923 6.04782 6.15904 6.16362 6.22451 6.27666 6.31506 6.34452
6.36749 6.47422 6.61095 6.68752 6.86998 7.05152 7.06651 7.37301
7.41834 7.48968 7.86986 8.16286 8.32166 8.63647 9.08811 9.64620
11.11631
Molecular weight = 237.18amu
Principal moments of inertia in cm(-1)
A = 0.023873 B = 0.007134 C = 0.006193
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1172.581253 B = 3923.762546 C = 4519.828430
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.142 4.142
3 C -0.147 4.147
4 C 0.074 3.926
5 N -0.527 5.527
6 C 0.187 3.813
7 C -0.499 4.499
8 H 0.061 0.939
9 C 0.055 3.945
10 N -0.900 5.900
11 Si 0.894 3.106
12 H -0.273 1.273
13 H -0.286 1.286
14 H -0.285 1.285
15 C 0.067 3.933
16 C -0.106 4.106
17 C -0.176 4.176
18 C -0.094 4.094
19 C -0.125 4.125
20 C -0.093 4.093
21 H 0.043 0.957
22 H 0.045 0.955
23 H 0.053 0.947
24 H 0.101 0.899
25 H 0.048 0.952
26 H 0.060 0.940
27 H 0.044 0.956
28 H 0.069 0.931
29 H 0.052 0.948
30 H 0.001 0.999
31 H 0.028 0.972
32 H 0.259 0.741
33 H 0.063 0.937
34 H 0.067 0.933
35 H 0.119 0.881
36 H 0.070 0.930
37 H 0.061 0.939
38 H 0.066 0.934
39 H 0.066 0.934
40 H 0.063 0.937
41 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.412 9.133 10.139 14.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.162 4.162
3 C -0.204 4.204
4 C -0.054 4.054
5 N -0.250 5.250
6 C 0.062 3.938
7 C -0.538 4.538
8 H 0.080 0.920
9 C -0.146 4.146
10 N -0.540 5.540
11 Si 0.722 3.278
12 H -0.197 1.197
13 H -0.212 1.212
14 H -0.211 1.211
15 C -0.061 4.061
16 C -0.107 4.107
17 C -0.195 4.195
18 C -0.131 4.131
19 C -0.162 4.162
20 C -0.130 4.130
21 H 0.062 0.938
22 H 0.064 0.936
23 H 0.072 0.928
24 H 0.119 0.881
25 H 0.067 0.933
26 H 0.079 0.921
27 H 0.063 0.937
28 H 0.088 0.912
29 H 0.071 0.929
30 H 0.018 0.982
31 H 0.046 0.954
32 H 0.069 0.931
33 H 0.081 0.919
34 H 0.085 0.915
35 H 0.137 0.863
36 H 0.088 0.912
37 H 0.080 0.920
38 H 0.084 0.916
39 H 0.085 0.915
40 H 0.081 0.919
41 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -3.182 8.729 10.310 13.879
hybrid contribution -0.468 -0.476 -0.920 1.137
sum -3.650 8.252 9.390 13.023
Atomic orbital electron populations
1.21733 0.96226 1.01274 1.00252 1.21902 0.95159 0.95917 1.03183
1.22122 1.00858 0.96957 1.00415 1.22094 0.89228 0.99368 0.94740
1.62349 1.04716 1.25300 1.32610 1.19888 0.96295 0.94972 0.82675
1.21183 1.28439 1.00382 1.03797 0.92038 1.24960 0.95396 0.98086
0.96158 1.69964 1.36163 1.37874 1.09968 0.86504 0.78822 0.84527
0.77951 1.19731 1.21205 1.21106 1.21423 0.99790 0.94198 0.90663
1.22012 0.94776 0.98247 0.95660 1.22973 0.99761 1.02491 0.94269
1.21301 0.97589 0.98739 0.95483 1.22464 0.97443 0.99068 0.97274
1.21356 0.97473 0.99919 0.94240 0.93810 0.93621 0.92782 0.88139
0.93280 0.92127 0.93734 0.91218 0.92922 0.98176 0.95404 0.93099
0.91948 0.91490 0.86278 0.91196 0.92030 0.91570 0.91533 0.91885
0.90659
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.12 9.11 37.16 0.34 -1.78 16
2 C -0.14 -2.58 2.39 -90.62 -0.22 -2.80 16
3 C -0.15 -2.35 7.55 37.16 0.28 -2.07 16
4 C 0.07 1.43 4.54 -3.82 -0.02 1.41 16
5 N -0.53 -11.30 4.62 -237.51 -1.10 -12.40 16
6 C 0.19 4.76 4.17 -4.98 -0.02 4.74 16
7 C -0.50 -13.88 8.45 -34.44 -0.29 -14.17 16
8 H 0.06 1.72 6.91 -52.49 -0.36 1.36 16
9 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16
10 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16
11 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16
12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
15 C 0.07 1.23 5.02 -4.97 -0.02 1.20 16
16 C -0.11 -1.71 5.45 -100.74 -0.55 -2.26 16
17 C -0.18 -2.69 10.58 -35.70 -0.38 -3.07 16
18 C -0.09 -1.17 6.82 -26.74 -0.18 -1.36 16
19 C -0.12 -1.44 7.20 -24.92 -0.18 -1.62 16
20 C -0.09 -1.26 5.75 -26.83 -0.15 -1.42 16
21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
22 H 0.04 0.66 8.13 -51.93 -0.42 0.24 16
23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
24 H 0.10 2.23 5.51 -51.93 -0.29 1.95 16
25 H 0.05 0.72 7.33 -51.93 -0.38 0.34 16
26 H 0.06 1.04 5.95 -51.93 -0.31 0.73 16
27 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16
28 H 0.07 1.46 7.16 -51.93 -0.37 1.08 16
29 H 0.05 0.90 5.24 -51.93 -0.27 0.63 16
30 H 0.00 0.02 5.31 -51.93 -0.28 -0.26 16
31 H 0.03 0.78 7.85 -51.93 -0.41 0.38 16
32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16
33 H 0.06 1.08 3.20 -51.93 -0.17 0.91 16
34 H 0.07 1.29 7.68 -51.93 -0.40 0.89 16
35 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16
36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
41 H 0.08 1.06 7.03 -51.93 -0.36 0.70 16
LS Contribution 309.89 15.07 4.67 4.67
Total: -1.00 -28.86 309.89 -9.15 -38.02
By element:
Atomic # 1 Polarization: 7.54 SS G_CDS: -6.95 Total: 0.59 kcal
Atomic # 6 Polarization: -20.25 SS G_CDS: -1.49 Total: -21.74 kcal
Atomic # 7 Polarization: -37.93 SS G_CDS: -0.36 Total: -38.29 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal
Total LS contribution 4.67 Total: 4.67 kcal
Total: -28.86 -9.15 -38.02 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000401035520.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.763 kcal
(2) G-P(sol) polarization free energy of solvation -28.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.016 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds