Wall clock time and date at job start Sun Mar 29 2020 22:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 C 1.53007 * 109.47154 * 119.99732 * 2 1 3 5 5 N 1.46894 * 109.47257 * 172.18267 * 4 2 1 6 6 C 1.46899 * 111.00302 * 314.51335 * 5 4 2 7 7 C 1.50701 * 109.46957 * 295.40209 * 6 5 4 8 8 H 1.07999 * 119.99957 * 4.76007 * 7 6 5 9 9 C 1.37880 * 119.99719 * 184.76290 * 7 6 5 10 10 N 1.31510 * 120.00003 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99655 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47235 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47253 * 119.99952 * 11 9 7 14 14 H 1.48497 * 109.47451 * 240.00174 * 11 9 7 15 15 C 1.46910 * 110.99987 * 78.46723 * 5 4 2 16 16 C 1.50693 * 109.47076 * 78.48252 * 15 5 4 17 17 C 1.30527 * 124.44565 * 96.14820 * 16 15 5 18 18 C 1.51105 * 111.10543 * 180.26280 * 17 16 15 19 19 C 1.54800 * 104.64320 * 343.20227 * 18 17 16 20 20 C 1.51106 * 124.45218 * 276.17433 * 16 15 5 21 21 H 1.08994 * 109.47283 * 300.00085 * 1 2 3 22 22 H 1.08999 * 109.47028 * 60.00499 * 1 2 3 23 23 H 1.08999 * 109.46802 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47544 * 239.99752 * 2 1 3 25 25 H 1.09001 * 109.47289 * 78.41751 * 3 2 1 26 26 H 1.09005 * 109.46943 * 198.41560 * 3 2 1 27 27 H 1.08995 * 109.47016 * 318.41705 * 3 2 1 28 28 H 1.08997 * 109.46814 * 52.18098 * 4 2 1 29 29 H 1.09004 * 109.46673 * 292.18372 * 4 2 1 30 30 H 1.09003 * 109.46930 * 55.39695 * 6 5 4 31 31 H 1.08998 * 109.47354 * 175.39795 * 6 5 4 32 32 H 0.96998 * 119.99457 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.46522 * 318.48563 * 15 5 4 34 34 H 1.08998 * 109.46847 * 198.48551 * 15 5 4 35 35 H 1.07994 * 124.45164 * 0.02562 * 17 16 15 36 36 H 1.09005 * 110.38662 * 102.13252 * 18 17 16 37 37 H 1.08997 * 110.39259 * 224.51044 * 18 17 16 38 38 H 1.08993 * 111.25229 * 266.86937 * 19 18 17 39 39 H 1.09005 * 110.89362 * 142.88124 * 19 18 17 40 40 H 1.09000 * 110.38548 * 315.23423 * 20 16 15 41 41 H 1.09000 * 110.38345 * 77.60404 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4968 -0.8865 1.1589 6 6 3.8908 -1.3646 -0.1731 7 6 3.3280 -2.7443 -0.3983 8 1 2.6739 -3.1875 0.3379 9 6 3.6484 -3.4408 -1.5443 10 7 4.4454 -2.9013 -2.4405 11 14 2.9514 -5.1513 -1.8232 12 1 2.0891 -5.5278 -0.6743 13 1 2.1453 -5.1601 -3.0703 14 1 4.0652 -6.1256 -1.9468 15 6 4.1905 0.3639 1.4959 16 6 4.2174 0.5357 2.9927 17 6 5.2176 0.1916 3.7575 18 6 4.9215 0.4921 5.2085 19 6 3.7303 1.4798 5.1685 20 6 3.0898 1.1285 3.8055 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.9665 1.8539 1.0067 26 1 3.0804 1.4600 -0.3247 27 1 1.4363 2.0412 -0.6820 28 1 1.5670 -1.7005 1.3220 29 1 1.7952 -0.1329 2.1338 30 1 3.5026 -0.6855 -0.9323 31 1 4.9782 -1.4003 -0.2394 32 1 4.6704 -3.3912 -3.2469 33 1 3.6646 1.2044 1.0431 34 1 5.2114 0.3267 1.1160 35 1 6.1346 -0.2533 3.4007 36 1 4.6439 -0.4204 5.7363 37 1 5.7844 0.9588 5.6834 38 1 4.0739 2.5140 5.1843 39 1 3.0375 1.2868 5.9876 40 1 2.7060 2.0274 3.3233 41 1 2.2922 0.3975 3.9379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401035520.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:04 Heat of formation + Delta-G solvation = -0.484775 kcal Electronic energy + Delta-G solvation = -17772.809920 eV Core-core repulsion = 15266.138124 eV Total energy + Delta-G solvation = -2506.671796 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.35200 -38.64856 -35.10706 -34.22066 -31.24942 -29.41339 -28.59937 -28.31869 -26.96917 -25.03624 -22.68546 -21.58571 -20.51777 -18.96111 -18.24515 -17.05361 -16.75121 -16.35789 -16.16577 -15.82975 -15.18653 -14.60786 -14.27894 -13.67904 -13.62155 -13.45757 -13.15888 -13.02363 -12.84302 -12.72708 -12.51672 -12.36204 -12.32832 -12.20083 -12.00818 -11.89709 -11.80850 -11.74746 -11.37843 -11.14490 -11.11565 -10.58686 -9.49328 -8.68263 -8.17664 -6.26295 1.37755 1.38922 1.40859 1.52628 2.40878 3.14307 3.56257 3.77818 3.85314 4.07645 4.14199 4.25867 4.28096 4.42251 4.45315 4.59298 4.68895 4.73429 4.78984 4.84937 4.92473 4.96046 5.00855 5.04110 5.08382 5.10521 5.16254 5.19009 5.27020 5.34628 5.39612 5.45097 5.51839 5.61280 5.73825 5.82879 6.11224 6.14690 6.47953 6.75233 6.90564 7.42670 8.92916 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023873 B = 0.007134 C = 0.006193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.581253 B = 3923.762546 C = 4519.828430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.139 4.139 3 C -0.140 4.140 4 C 0.078 3.922 5 N -0.539 5.539 6 C 0.206 3.794 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.962 3.038 12 H -0.265 1.265 13 H -0.278 1.278 14 H -0.280 1.280 15 C 0.068 3.932 16 C -0.126 4.126 17 C -0.179 4.179 18 C -0.092 4.092 19 C -0.116 4.116 20 C -0.091 4.091 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.081 0.919 30 H -0.014 1.014 31 H -0.011 1.011 32 H 0.262 0.738 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 9.942 12.007 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C -0.197 4.197 4 C -0.050 4.050 5 N -0.262 5.262 6 C 0.080 3.920 7 C -0.549 4.549 8 H 0.075 0.925 9 C -0.195 4.195 10 N -0.576 5.576 11 Si 0.788 3.212 12 H -0.190 1.190 13 H -0.204 1.204 14 H -0.206 1.206 15 C -0.059 4.059 16 C -0.127 4.127 17 C -0.199 4.199 18 C -0.129 4.129 19 C -0.153 4.153 20 C -0.128 4.128 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.004 0.996 31 H 0.008 0.992 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.793 9.549 12.196 16.214 hybrid contribution 0.096 -0.703 -1.489 1.650 sum -4.696 8.846 10.706 14.660 Atomic orbital electron populations 1.21678 0.93738 1.01371 1.02096 1.21766 0.97267 0.96629 1.00262 1.22034 0.99804 0.95690 1.02132 1.22092 0.87481 0.98914 0.96499 1.62228 1.06567 1.27573 1.29782 1.19481 0.93525 0.94306 0.84726 1.21435 1.28314 1.01390 1.03794 0.92544 1.25824 0.95662 1.02198 0.95840 1.70087 1.37396 1.39607 1.10514 0.85435 0.78228 0.79441 0.78140 1.18963 1.20354 1.20627 1.21420 0.98299 0.93232 0.92949 1.22034 0.96651 0.99848 0.94179 1.23262 0.99009 1.01211 0.96392 1.21342 0.98988 0.99493 0.93114 1.22470 0.96954 0.99427 0.96468 1.21363 0.96297 1.00025 0.95072 0.91173 0.92509 0.93632 0.92959 0.91093 0.94122 0.91901 0.93382 0.90085 0.99642 0.99247 0.92882 0.90533 0.93749 0.87654 0.90830 0.90256 0.90184 0.89518 0.90692 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.11 71.98 0.66 -3.18 16 2 C -0.14 -5.05 2.39 -10.79 -0.03 -5.08 16 3 C -0.14 -4.31 7.55 71.98 0.54 -3.76 16 4 C 0.08 2.99 4.54 86.31 0.39 3.39 16 5 N -0.54 -23.82 4.62 -905.36 -4.18 -28.00 16 6 C 0.21 11.10 4.17 85.56 0.36 11.46 16 7 C -0.51 -29.44 8.45 25.60 0.22 -29.22 16 8 H 0.06 3.24 6.91 -2.91 -0.02 3.22 16 9 C 0.00 0.13 5.46 84.66 0.46 0.59 16 10 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 11 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 C 0.07 2.55 5.02 85.55 0.43 2.98 16 16 C -0.13 -3.97 5.45 -15.87 -0.09 -4.05 16 17 C -0.18 -5.37 10.58 26.26 0.28 -5.09 16 18 C -0.09 -2.06 6.82 30.59 0.21 -1.85 16 19 C -0.12 -2.22 7.20 31.76 0.23 -2.00 16 20 C -0.09 -2.20 5.75 30.53 0.18 -2.02 16 21 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.05 2.42 5.51 -2.39 -0.01 2.41 16 25 H 0.07 1.87 7.33 -2.39 -0.02 1.85 16 26 H 0.04 1.41 5.95 -2.38 -0.01 1.39 16 27 H 0.06 1.70 8.00 -2.39 -0.02 1.68 16 28 H 0.05 2.03 7.16 -2.39 -0.02 2.01 16 29 H 0.08 2.63 5.24 -2.38 -0.01 2.62 16 30 H -0.01 -0.78 5.31 -2.39 -0.01 -0.79 16 31 H -0.01 -0.64 7.85 -2.39 -0.02 -0.66 16 32 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 33 H 0.08 2.64 3.20 -2.39 -0.01 2.63 16 34 H 0.04 1.82 7.68 -2.39 -0.02 1.80 16 35 H 0.11 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.79 7.03 -2.39 -0.02 1.78 16 Total: -1.00 -64.41 309.89 2.95 -61.46 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.98 Total: 13.89 kcal Atomic # 6 Polarization: -41.67 SS G_CDS: 3.83 Total: -37.84 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.89 Total: -84.87 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -64.41 2.95 -61.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401035520.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.971 kcal (2) G-P(sol) polarization free energy of solvation -64.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds