Wall clock time and date at job start Sun Mar 29 2020 21:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99991 * 2 1 4 4 H 1.48502 * 109.46810 * 269.99525 * 3 2 1 5 5 H 1.48504 * 109.46952 * 29.99393 * 3 2 1 6 6 H 1.48494 * 109.47127 * 149.99233 * 3 2 1 7 7 C 1.37876 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99723 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.53123 * 109.52378 * 60.32942 * 9 7 2 11 11 C 1.53034 * 109.27992 * 177.57008 * 10 9 7 12 12 N 1.46847 * 109.51345 * 300.80438 * 11 10 9 13 13 C 1.46895 * 110.99982 * 185.84805 * 12 11 10 14 14 C 1.53001 * 109.47473 * 169.99767 * 13 12 11 15 15 C 1.52993 * 109.47468 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47468 * 179.97438 * 15 14 13 17 17 C 1.52997 * 117.50050 * 243.75307 * 16 15 14 18 18 C 1.53001 * 117.50327 * 175.09110 * 16 15 14 19 19 C 1.46843 * 111.20124 * 61.74903 * 12 11 10 20 20 C 1.53042 * 109.52278 * 298.25596 * 19 12 11 21 21 H 0.96999 * 120.00220 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.57644 * 300.16020 * 9 7 2 23 23 H 1.08997 * 109.51083 * 57.61602 * 10 9 7 24 24 H 1.08998 * 109.48980 * 297.50533 * 10 9 7 25 25 H 1.09002 * 109.46271 * 180.79158 * 11 10 9 26 26 H 1.08994 * 109.46242 * 60.81457 * 11 10 9 27 27 H 1.09000 * 109.47118 * 289.99436 * 13 12 11 28 28 H 1.09003 * 109.47534 * 49.99526 * 13 12 11 29 29 H 1.09000 * 109.46678 * 299.99938 * 14 13 12 30 30 H 1.09003 * 109.46937 * 59.99394 * 14 13 12 31 31 H 1.08996 * 109.47641 * 300.00220 * 15 14 13 32 32 H 1.09003 * 109.47305 * 59.99903 * 15 14 13 33 33 H 1.08994 * 115.54691 * 29.41607 * 16 15 14 34 34 H 1.09004 * 117.49869 * 359.97438 * 17 16 15 35 35 H 1.08993 * 117.50295 * 145.01929 * 17 16 15 36 36 H 1.08995 * 117.49611 * 214.98392 * 18 16 15 37 37 H 1.08999 * 117.49488 * 359.97438 * 18 16 15 38 38 H 1.08993 * 109.46313 * 58.27251 * 19 12 11 39 39 H 1.09000 * 109.46480 * 178.25361 * 19 12 11 40 40 H 1.08997 * 109.50758 * 179.11703 * 20 19 12 41 41 H 1.08998 * 109.50897 * 299.20258 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.3770 -2.5854 -1.2538 11 6 -0.3389 -3.9377 -1.2788 12 7 0.6549 -5.0188 -1.2779 13 6 0.0088 -6.3279 -1.4412 14 6 1.0762 -7.3967 -1.6851 15 6 0.4033 -8.7602 -1.8546 16 6 1.4706 -9.8288 -2.0991 17 6 1.4514 -10.5509 -3.4478 18 6 1.0072 -11.2847 -2.1801 19 6 1.4752 -4.9851 -0.0604 20 6 2.2451 -3.6639 0.0012 21 1 -0.4850 0.8400 -0.0004 22 1 0.6212 -2.5572 0.8883 23 1 1.0028 -2.4883 -2.1409 24 1 -0.3609 -1.7832 -1.2387 25 1 -0.9512 -4.0080 -2.1778 26 1 -0.9748 -4.0283 -0.3983 27 1 -0.5503 -6.5724 -0.5380 28 1 -0.6720 -6.2936 -2.2918 29 1 1.6353 -7.1522 -2.5883 30 1 1.7569 -7.4310 -0.8345 31 1 -0.1556 -9.0044 -0.9512 32 1 -0.2777 -8.7261 -2.7050 33 1 2.4427 -9.6346 -1.6461 34 1 0.6781 -10.2649 -4.1609 35 1 2.4108 -10.8320 -3.8819 36 1 1.6746 -12.0482 -1.7806 37 1 -0.0581 -11.4812 -2.0587 38 1 0.8306 -5.0709 0.8143 39 1 2.1807 -5.8159 -0.0746 40 1 2.8418 -3.6324 0.9127 41 1 2.9007 -3.5839 -0.8659 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000406022256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:34 Heat of formation + Delta-G solvation = -0.243978 kcal Electronic energy + Delta-G solvation = -16908.357734 eV Core-core repulsion = 14401.696380 eV Total energy + Delta-G solvation = -2506.661354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.48615 -37.63361 -34.51610 -32.49383 -30.71706 -29.65240 -26.69616 -24.65005 -22.61350 -22.47554 -21.63922 -20.48274 -20.42582 -18.52916 -16.36589 -15.89360 -15.15820 -15.03357 -14.48839 -14.34679 -13.81687 -13.48377 -12.95682 -12.51334 -12.43800 -12.14378 -11.82625 -11.72231 -11.64065 -11.26260 -11.03919 -10.89419 -10.74805 -10.58255 -10.43980 -10.19132 -10.14299 -9.98761 -9.85407 -9.38506 -8.87212 -8.66078 -8.25209 -7.67043 -5.93357 -3.98535 3.33990 3.40412 3.43874 3.63541 4.33206 4.48500 4.65639 4.77520 4.81345 5.12139 5.19578 5.36538 5.40879 5.44440 5.60573 5.69061 5.73543 5.82468 5.85521 5.92300 5.94934 5.97728 6.13068 6.17485 6.26049 6.31311 6.41699 6.49186 6.65854 6.69391 6.91836 7.14132 7.23010 7.49949 7.68576 7.77923 7.89358 8.10281 8.20953 8.53072 9.05269 9.65599 11.12836 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.065678 B = 0.003976 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.218454 B = 7040.471819 C = 7213.241799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.104 4.104 11 C 0.058 3.942 12 N -0.536 5.536 13 C 0.054 3.946 14 C -0.112 4.112 15 C -0.088 4.088 16 C -0.148 4.148 17 C -0.182 4.182 18 C -0.186 4.186 19 C 0.058 3.942 20 C -0.107 4.107 21 H 0.259 0.741 22 H 0.020 0.980 23 H 0.043 0.957 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.021 0.979 27 H 0.024 0.976 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.021 0.979 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 -17.264 -3.847 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.142 4.142 11 C -0.070 4.070 12 N -0.261 5.261 13 C -0.074 4.074 14 C -0.150 4.150 15 C -0.126 4.126 16 C -0.166 4.166 17 C -0.219 4.219 18 C -0.223 4.223 19 C -0.069 4.069 20 C -0.145 4.145 21 H 0.069 0.931 22 H 0.038 0.962 23 H 0.062 0.938 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.040 0.960 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.194 -17.047 -4.236 17.566 hybrid contribution -0.131 0.742 0.669 1.008 sum 0.063 -16.305 -3.567 16.690 Atomic orbital electron populations 1.69881 1.05865 1.26242 1.51218 1.24975 0.94841 0.98996 0.95267 0.86634 0.79876 0.83667 0.78044 1.20739 1.21359 1.20000 1.21223 0.92883 0.90707 1.49943 0.92770 1.18684 0.92723 0.91745 0.93941 1.21659 1.00171 0.93022 0.99383 1.22260 0.93053 0.93146 0.98508 1.61989 1.23841 1.02070 1.38227 1.22077 0.95824 0.89833 0.99693 1.21574 0.98277 0.92587 1.02553 1.21161 0.96444 0.93459 1.01524 1.22368 1.00831 0.92772 1.00653 1.23033 1.02867 1.04825 0.91152 1.22970 1.01642 0.95231 1.02470 1.22160 0.95959 0.99183 0.89648 1.21680 0.98711 0.93888 1.00173 0.93145 0.96217 0.93847 0.89028 0.92769 0.96103 0.95768 0.91536 0.91115 0.91912 0.91878 0.91948 0.87834 0.88849 0.89069 0.89091 0.88968 0.96048 0.92230 0.93329 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 11.37 55.43 0.63 -25.13 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 10 C -0.10 -2.52 5.12 -26.65 -0.14 -2.65 16 11 C 0.06 1.17 5.46 -3.84 -0.02 1.15 16 12 N -0.54 -9.86 4.66 -234.68 -1.09 -10.95 16 13 C 0.05 0.80 4.96 -3.83 -0.02 0.78 16 14 C -0.11 -1.40 5.10 -26.73 -0.14 -1.54 16 15 C -0.09 -0.91 5.50 -26.73 -0.15 -1.06 16 16 C -0.15 -1.42 5.73 -90.62 -0.52 -1.94 16 17 C -0.18 -1.59 10.18 -26.70 -0.27 -1.86 16 18 C -0.19 -1.57 10.26 -26.69 -0.27 -1.85 16 19 C 0.06 1.08 5.29 -3.83 -0.02 1.06 16 20 C -0.11 -2.31 5.32 -26.64 -0.14 -2.45 16 21 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 22 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 24 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 25 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.36 8.12 -51.93 -0.42 -0.07 16 28 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 33 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.98 6.21 -51.93 -0.32 0.66 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -28.32 318.37 -10.63 -38.94 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.67 Total: -1.89 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -2.27 Total: -22.30 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.46 Total: -36.09 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.32 -10.63 -38.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406022256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.700 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds