Wall clock time and date at job start Sun Mar 29 2020 21:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99991 * 2 1 4 4 H 1.48502 * 109.46810 * 269.99525 * 3 2 1 5 5 H 1.48504 * 109.46952 * 29.99393 * 3 2 1 6 6 H 1.48494 * 109.47127 * 149.99233 * 3 2 1 7 7 C 1.37876 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99723 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.53123 * 109.52378 * 60.32942 * 9 7 2 11 11 C 1.53034 * 109.27992 * 177.57008 * 10 9 7 12 12 N 1.46847 * 109.51345 * 300.80438 * 11 10 9 13 13 C 1.46895 * 110.99982 * 185.84805 * 12 11 10 14 14 C 1.53001 * 109.47473 * 169.99767 * 13 12 11 15 15 C 1.52993 * 109.47468 * 179.97438 * 14 13 12 16 16 C 1.53001 * 109.47468 * 179.97438 * 15 14 13 17 17 C 1.52997 * 117.50050 * 243.75307 * 16 15 14 18 18 C 1.53001 * 117.50327 * 175.09110 * 16 15 14 19 19 C 1.46843 * 111.20124 * 61.74903 * 12 11 10 20 20 C 1.53042 * 109.52278 * 298.25596 * 19 12 11 21 21 H 0.96999 * 120.00220 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.57644 * 300.16020 * 9 7 2 23 23 H 1.08997 * 109.51083 * 57.61602 * 10 9 7 24 24 H 1.08998 * 109.48980 * 297.50533 * 10 9 7 25 25 H 1.09002 * 109.46271 * 180.79158 * 11 10 9 26 26 H 1.08994 * 109.46242 * 60.81457 * 11 10 9 27 27 H 1.09000 * 109.47118 * 289.99436 * 13 12 11 28 28 H 1.09003 * 109.47534 * 49.99526 * 13 12 11 29 29 H 1.09000 * 109.46678 * 299.99938 * 14 13 12 30 30 H 1.09003 * 109.46937 * 59.99394 * 14 13 12 31 31 H 1.08996 * 109.47641 * 300.00220 * 15 14 13 32 32 H 1.09003 * 109.47305 * 59.99903 * 15 14 13 33 33 H 1.08994 * 115.54691 * 29.41607 * 16 15 14 34 34 H 1.09004 * 117.49869 * 359.97438 * 17 16 15 35 35 H 1.08993 * 117.50295 * 145.01929 * 17 16 15 36 36 H 1.08995 * 117.49611 * 214.98392 * 18 16 15 37 37 H 1.08999 * 117.49488 * 359.97438 * 18 16 15 38 38 H 1.08993 * 109.46313 * 58.27251 * 19 12 11 39 39 H 1.09000 * 109.46480 * 178.25361 * 19 12 11 40 40 H 1.08997 * 109.50758 * 179.11703 * 20 19 12 41 41 H 1.08998 * 109.50897 * 299.20258 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.3770 -2.5854 -1.2538 11 6 -0.3389 -3.9377 -1.2788 12 7 0.6549 -5.0188 -1.2779 13 6 0.0088 -6.3279 -1.4412 14 6 1.0762 -7.3967 -1.6851 15 6 0.4033 -8.7602 -1.8546 16 6 1.4706 -9.8288 -2.0991 17 6 1.4514 -10.5509 -3.4478 18 6 1.0072 -11.2847 -2.1801 19 6 1.4752 -4.9851 -0.0604 20 6 2.2451 -3.6639 0.0012 21 1 -0.4850 0.8400 -0.0004 22 1 0.6212 -2.5572 0.8883 23 1 1.0028 -2.4883 -2.1409 24 1 -0.3609 -1.7832 -1.2387 25 1 -0.9512 -4.0080 -2.1778 26 1 -0.9748 -4.0283 -0.3983 27 1 -0.5503 -6.5724 -0.5380 28 1 -0.6720 -6.2936 -2.2918 29 1 1.6353 -7.1522 -2.5883 30 1 1.7569 -7.4310 -0.8345 31 1 -0.1556 -9.0044 -0.9512 32 1 -0.2777 -8.7261 -2.7050 33 1 2.4427 -9.6346 -1.6461 34 1 0.6781 -10.2649 -4.1609 35 1 2.4108 -10.8320 -3.8819 36 1 1.6746 -12.0482 -1.7806 37 1 -0.0581 -11.4812 -2.0587 38 1 0.8306 -5.0709 0.8143 39 1 2.1807 -5.8159 -0.0746 40 1 2.8418 -3.6324 0.9127 41 1 2.9007 -3.5839 -0.8659 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000406022256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:34 Heat of formation + Delta-G solvation = -14.764696 kcal Electronic energy + Delta-G solvation = -16908.987400 eV Core-core repulsion = 14401.696380 eV Total energy + Delta-G solvation = -2507.291019 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.94878 -38.50385 -36.13385 -34.11637 -32.32443 -31.34928 -28.26631 -26.22006 -24.12107 -23.35952 -23.17072 -21.71385 -21.25051 -20.34676 -18.44458 -16.99290 -16.53403 -16.33197 -16.03437 -15.50654 -15.05916 -14.88068 -14.69313 -14.32019 -14.07673 -13.45811 -13.05847 -12.92006 -12.84816 -12.69626 -12.49201 -12.34523 -12.22851 -12.07226 -11.89837 -11.79216 -11.56776 -11.34638 -11.00901 -10.77398 -10.65742 -10.64492 -10.35880 -9.15783 -8.07607 -6.21196 1.41418 1.41892 1.52255 2.44180 2.93686 3.07273 3.19125 3.76933 4.05738 4.08153 4.14083 4.22174 4.27259 4.36089 4.38903 4.51931 4.61741 4.69751 4.77505 4.80581 4.82871 4.88768 4.93894 4.96366 4.98418 5.10789 5.12366 5.24999 5.28398 5.30597 5.35668 5.43092 5.52296 5.56945 5.63738 6.00794 6.04074 6.32286 6.37917 6.41482 6.90406 7.46508 8.97028 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.065678 B = 0.003976 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.218454 B = 7040.471819 C = 7213.241799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.043 3.957 10 C -0.095 4.095 11 C 0.068 3.932 12 N -0.544 5.544 13 C 0.054 3.946 14 C -0.103 4.103 15 C -0.081 4.081 16 C -0.161 4.161 17 C -0.184 4.184 18 C -0.180 4.180 19 C 0.065 3.935 20 C -0.100 4.100 21 H 0.260 0.740 22 H -0.013 1.013 23 H 0.030 0.970 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.013 0.987 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.017 0.983 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 -18.670 -4.314 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.134 4.134 11 C -0.060 4.060 12 N -0.268 5.268 13 C -0.073 4.073 14 C -0.141 4.141 15 C -0.119 4.119 16 C -0.179 4.179 17 C -0.220 4.220 18 C -0.217 4.217 19 C -0.063 4.063 20 C -0.138 4.138 21 H 0.069 0.931 22 H 0.005 0.995 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.031 0.969 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.035 0.965 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.685 -18.473 -4.705 19.075 hybrid contribution -0.292 1.166 0.817 1.454 sum 0.393 -17.307 -3.888 17.743 Atomic orbital electron populations 1.70019 1.07168 1.27055 1.51570 1.25764 0.95714 1.02413 0.94855 0.85613 0.78737 0.79412 0.78233 1.20123 1.20889 1.19320 1.21594 0.93002 0.92277 1.50308 0.93099 1.18665 0.93183 0.92675 0.92984 1.21423 0.99169 0.94686 0.98096 1.22036 0.93014 0.91877 0.99055 1.61955 1.23654 1.03279 1.37959 1.22184 0.96603 0.88259 1.00270 1.21485 0.97539 0.92968 1.02082 1.21074 0.96559 0.92334 1.01893 1.22341 1.00605 0.93330 1.01621 1.23112 1.03318 1.04550 0.91068 1.23047 1.02161 0.94581 1.01938 1.22082 0.96215 0.98249 0.89717 1.21555 0.98004 0.94152 1.00113 0.93086 0.99512 0.95098 0.92082 0.90919 0.96896 0.95356 0.90582 0.91786 0.92069 0.91551 0.91516 0.88062 0.88648 0.88497 0.88238 0.88478 0.96461 0.89295 0.92943 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.19 11.37 21.45 0.24 -53.94 16 2 C 0.01 0.61 5.31 84.65 0.45 1.06 16 3 Si 0.95 44.54 29.54 68.60 2.03 46.56 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.53 -30.42 8.56 25.60 0.22 -30.20 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.04 2.27 2.16 -11.46 -0.02 2.24 16 10 C -0.10 -4.72 5.12 30.65 0.16 -4.56 16 11 C 0.07 2.73 5.46 86.32 0.47 3.20 16 12 N -0.54 -19.22 4.66 -896.39 -4.17 -23.39 16 13 C 0.05 1.48 4.96 86.30 0.43 1.91 16 14 C -0.10 -2.33 5.10 30.59 0.16 -2.18 16 15 C -0.08 -1.47 5.50 30.59 0.17 -1.31 16 16 C -0.16 -2.73 5.73 -10.79 -0.06 -2.79 16 17 C -0.18 -2.80 10.18 30.62 0.31 -2.49 16 18 C -0.18 -2.61 10.26 30.62 0.31 -2.29 16 19 C 0.07 2.33 5.29 86.33 0.46 2.79 16 20 C -0.10 -4.33 5.32 30.65 0.16 -4.16 16 21 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 22 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 23 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.06 3.38 6.17 -2.39 -0.01 3.36 16 25 H 0.07 2.63 8.02 -2.39 -0.02 2.62 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.03 0.77 8.12 -2.39 -0.02 0.75 16 28 H 0.08 1.95 7.99 -2.39 -0.02 1.93 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.06 1.41 6.43 -2.39 -0.02 1.39 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.17 7.87 -2.39 -0.02 1.15 16 33 H 0.10 1.76 8.07 -2.39 -0.02 1.74 16 34 H 0.10 1.41 8.03 -2.38 -0.02 1.39 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 2.70 6.21 -2.39 -0.01 2.68 16 40 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -60.88 318.37 2.26 -58.62 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.95 Total: 10.93 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 3.21 Total: -38.78 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -3.93 Total: -77.34 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.88 2.26 -58.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406022256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.853 kcal (2) G-P(sol) polarization free energy of solvation -60.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds