Wall clock time and date at job start Sun Mar 29 2020 22:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99892 * 2 1 4 4 H 1.48499 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47196 * 300.00113 * 3 2 1 6 6 H 1.48496 * 109.47165 * 60.00228 * 3 2 1 7 7 C 1.37879 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99606 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00151 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.52997 * 300.09389 * 9 7 2 11 11 C 1.53110 * 109.50702 * 60.19538 * 9 7 2 12 12 C 1.53116 * 109.16138 * 177.59803 * 11 9 7 13 13 C 1.53034 * 109.27766 * 302.34128 * 12 11 9 14 14 N 1.46848 * 109.52086 * 59.18490 * 13 12 11 15 15 C 1.46902 * 110.99958 * 174.16220 * 14 13 12 16 16 C 1.53001 * 109.46901 * 294.20187 * 15 14 13 17 17 C 1.53000 * 109.46886 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.53000 * 117.50165 * 243.62462 * 18 17 16 20 20 C 1.52994 * 59.99907 * 252.50793 * 19 18 17 21 21 C 1.46852 * 111.19424 * 298.25597 * 14 13 12 22 22 H 0.96997 * 120.00130 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.52351 * 297.49976 * 11 9 7 24 24 H 1.08996 * 109.52562 * 57.62728 * 11 9 7 25 25 H 1.08996 * 109.50416 * 62.28563 * 12 11 9 26 26 H 1.09001 * 109.50522 * 182.36603 * 12 11 9 27 27 H 1.09004 * 109.46541 * 299.16658 * 13 12 11 28 28 H 1.09002 * 109.46718 * 179.19651 * 13 12 11 29 29 H 1.09001 * 109.46712 * 174.20589 * 15 14 13 30 30 H 1.09002 * 109.47411 * 54.20700 * 15 14 13 31 31 H 1.09001 * 109.46652 * 60.00371 * 16 15 14 32 32 H 1.08992 * 109.47514 * 300.00460 * 16 15 14 33 33 H 1.09002 * 109.47398 * 300.00496 * 17 16 15 34 34 H 1.09001 * 109.47194 * 60.00677 * 17 16 15 35 35 H 1.09003 * 115.54795 * 29.32827 * 18 17 16 36 36 H 1.09001 * 117.49810 * 359.97438 * 19 18 17 37 37 H 1.08995 * 117.50134 * 145.01745 * 19 18 17 38 38 H 1.09004 * 117.49933 * 252.50827 * 20 19 18 39 39 H 1.09002 * 117.49788 * 107.49222 * 20 19 18 40 40 H 1.08999 * 109.46052 * 181.76231 * 21 14 13 41 41 H 1.09001 * 109.46352 * 301.73108 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6231 -2.5574 0.8885 11 6 0.3737 -2.5830 -1.2525 12 6 -0.3420 -3.9364 -1.2750 13 6 0.6980 -5.0585 -1.2388 14 7 1.5111 -4.9348 -0.0223 15 6 2.4283 -6.0740 0.1159 16 6 1.6211 -7.3543 0.3398 17 6 2.5764 -8.5407 0.4844 18 6 1.7693 -9.8211 0.7076 19 6 1.9522 -10.5481 2.0414 20 6 2.5397 -11.1419 0.7596 21 6 2.2448 -3.6629 -0.0011 22 1 -0.4850 0.8400 0.0004 23 1 -0.3644 -1.7810 -1.2345 24 1 0.9968 -2.4846 -2.1413 25 1 -0.9950 -4.0173 -0.4061 26 1 -0.9357 -4.0191 -2.1854 27 1 1.3420 -4.9853 -2.1152 28 1 0.1913 -6.0236 -1.2403 29 1 3.0888 -5.9074 0.9669 30 1 3.0234 -6.1736 -0.7919 31 1 0.9607 -7.5208 -0.5112 32 1 1.0261 -7.2547 1.2475 33 1 3.1719 -8.6405 -0.4232 34 1 3.2366 -8.3740 1.3356 35 1 0.7762 -9.8351 0.2585 36 1 2.6479 -10.1143 2.7597 37 1 1.0793 -11.0404 2.4701 38 1 2.0534 -12.0250 0.3450 39 1 3.6217 -11.0987 0.6349 40 1 2.8616 -3.6143 0.8962 41 1 2.8815 -3.5962 -0.8833 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000406039283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:07 Heat of formation + Delta-G solvation = -0.316695 kcal Electronic energy + Delta-G solvation = -16952.752357 eV Core-core repulsion = 14446.087850 eV Total energy + Delta-G solvation = -2506.664507 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.46186 -37.61991 -34.42029 -32.52419 -30.87523 -29.75824 -26.11382 -24.92484 -22.71655 -22.47836 -21.67401 -20.47218 -20.28612 -18.54620 -16.36201 -15.83543 -15.12925 -14.98773 -14.44584 -14.39492 -13.71979 -13.39791 -13.12476 -12.53659 -12.40621 -12.12787 -11.78114 -11.69360 -11.65103 -11.34865 -11.00584 -10.92775 -10.74690 -10.62789 -10.43764 -10.27143 -10.00500 -9.92742 -9.79169 -9.42320 -8.95110 -8.65367 -8.27067 -7.58647 -5.94342 -4.00326 3.31741 3.39678 3.43489 3.65515 4.34740 4.48884 4.70133 4.79620 4.84337 5.14866 5.22798 5.35594 5.43670 5.46144 5.63913 5.71918 5.73129 5.82982 5.87929 5.93618 5.95333 5.97143 6.14195 6.16353 6.30547 6.38026 6.48077 6.51176 6.56967 6.77383 6.80672 7.02500 7.27071 7.45540 7.73959 7.79683 7.90311 8.13115 8.21649 8.52390 9.04111 9.63782 11.11694 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.051325 B = 0.004200 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.412195 B = 6664.590757 C = 6956.838588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.061 3.939 14 N -0.539 5.539 15 C 0.055 3.945 16 C -0.112 4.112 17 C -0.088 4.088 18 C -0.148 4.148 19 C -0.182 4.182 20 C -0.186 4.186 21 C 0.068 3.932 22 H 0.259 0.741 23 H 0.090 0.910 24 H 0.029 0.971 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -16.907 -0.091 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.067 4.067 14 N -0.264 5.264 15 C -0.074 4.074 16 C -0.150 4.150 17 C -0.126 4.126 18 C -0.166 4.166 19 C -0.219 4.219 20 C -0.223 4.223 21 C -0.059 4.059 22 H 0.068 0.932 23 H 0.108 0.892 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.253 -16.775 0.310 16.928 hybrid contribution 1.027 0.883 -0.742 1.544 sum 3.279 -15.892 -0.432 16.232 Atomic orbital electron populations 1.69907 1.05828 1.26153 1.50847 1.24943 0.94832 0.98945 0.95195 0.86575 0.80130 0.83990 0.77514 1.19874 1.21126 1.21048 1.21202 0.92855 0.90720 1.50452 0.92831 1.18668 0.92659 0.90314 0.94840 0.94778 1.21644 1.00010 0.94744 0.98451 1.21675 0.97234 0.96553 1.00091 1.22064 0.95712 0.98710 0.90175 1.61996 1.24311 1.02311 1.37754 1.22069 0.94470 0.91036 0.99777 1.21578 0.98058 0.92820 1.02519 1.21165 0.97461 0.92387 1.01593 1.22367 1.00606 0.92711 1.00927 1.23023 1.03192 1.04481 0.91162 1.22959 0.99988 0.97102 1.02284 1.22300 0.96383 0.88624 0.98610 0.93152 0.89176 0.95245 0.92135 0.93656 0.96144 0.92220 0.91397 0.95877 0.92058 0.91097 0.91922 0.91883 0.87873 0.88818 0.89080 0.89120 0.88973 0.92391 0.96471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 11.36 55.43 0.63 -25.00 16 2 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.30 8.56 -34.44 -0.29 -14.60 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.38 2.26 -91.70 -0.21 1.17 16 10 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.67 5.03 -26.61 -0.13 -2.81 16 12 C -0.12 -2.36 6.09 -26.65 -0.16 -2.53 16 13 C 0.06 1.11 5.29 -3.83 -0.02 1.09 16 14 N -0.54 -10.26 4.66 -234.66 -1.09 -11.35 16 15 C 0.05 0.84 4.96 -3.82 -0.02 0.83 16 16 C -0.11 -1.44 5.10 -26.73 -0.14 -1.57 16 17 C -0.09 -0.94 5.50 -26.73 -0.15 -1.09 16 18 C -0.15 -1.45 5.74 -90.62 -0.52 -1.97 16 19 C -0.18 -1.63 10.18 -26.73 -0.27 -1.90 16 20 C -0.19 -1.60 10.25 -26.74 -0.27 -1.88 16 21 C 0.07 1.48 4.68 -3.83 -0.02 1.47 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.09 2.43 6.16 -51.93 -0.32 2.11 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.95 6.21 -51.93 -0.32 0.63 16 29 H 0.07 1.03 7.99 -51.93 -0.41 0.61 16 30 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.66 7.88 -51.93 -0.41 0.25 16 35 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 36 H 0.09 0.82 8.03 -51.93 -0.42 0.41 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.25 8.02 -51.93 -0.42 0.84 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -28.26 318.35 -10.65 -38.91 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.67 Total: -1.64 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -2.30 Total: -22.14 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.46 Total: -36.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.26 -10.65 -38.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406039283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.596 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds