Wall clock time and date at job start Sun Mar 29 2020 22:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99787 * 2 1 4 4 H 1.48502 * 109.46819 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47304 * 299.99692 * 3 2 1 6 6 H 1.48504 * 109.47251 * 59.99917 * 3 2 1 7 7 C 1.37882 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99829 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.50834 * 60.07582 * 9 7 2 11 11 C 1.53125 * 109.50700 * 300.00210 * 9 7 2 12 12 C 1.53114 * 109.16368 * 182.36705 * 11 9 7 13 13 C 1.53037 * 109.31211 * 57.63311 * 12 11 9 14 14 N 1.46854 * 109.52285 * 300.88400 * 13 12 11 15 15 C 1.46895 * 110.99648 * 185.80147 * 14 13 12 16 16 C 1.52996 * 109.47373 * 65.74825 * 15 14 13 17 17 C 1.53000 * 109.47631 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.47631 * 179.97438 * 17 16 15 19 19 C 1.53008 * 117.49691 * 243.74828 * 18 17 16 20 20 C 1.52994 * 117.49969 * 175.08969 * 18 17 16 21 21 C 1.46840 * 111.23238 * 61.67711 * 14 13 12 22 22 H 0.97000 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.52257 * 62.45898 * 11 9 7 24 24 H 1.09004 * 109.56800 * 302.30607 * 11 9 7 25 25 H 1.09002 * 109.50377 * 177.59436 * 12 11 9 26 26 H 1.09003 * 109.50316 * 297.67431 * 12 11 9 27 27 H 1.09000 * 109.46159 * 60.85546 * 13 12 11 28 28 H 1.09000 * 109.46461 * 180.82902 * 13 12 11 29 29 H 1.09006 * 109.47095 * 185.74417 * 15 14 13 30 30 H 1.08994 * 109.47117 * 305.74495 * 15 14 13 31 31 H 1.09008 * 109.47411 * 299.99935 * 16 15 14 32 32 H 1.09003 * 109.47446 * 59.99598 * 16 15 14 33 33 H 1.09007 * 109.47097 * 300.00148 * 17 16 15 34 34 H 1.09003 * 109.47096 * 59.99307 * 17 16 15 35 35 H 1.09000 * 115.55156 * 29.41247 * 18 17 16 36 36 H 1.08995 * 117.49550 * 359.97438 * 19 18 17 37 37 H 1.09000 * 117.49876 * 145.01922 * 19 18 17 38 38 H 1.09012 * 117.49583 * 214.97563 * 20 18 17 39 39 H 1.08997 * 117.50285 * 359.97079 * 20 18 17 40 40 H 1.09001 * 109.46294 * 178.26219 * 21 14 13 41 41 H 1.09003 * 109.45458 * 58.29272 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6256 -2.5583 -0.8902 11 6 0.3699 -2.5808 1.2502 12 6 -0.3465 -3.9339 1.2725 13 6 0.6924 -5.0572 1.2403 14 7 1.5099 -4.9349 0.0265 15 6 2.4268 -6.0747 -0.1076 16 6 1.6196 -7.3549 -0.3320 17 6 2.5745 -8.5423 -0.4710 18 6 1.7673 -9.8226 -0.6948 19 6 1.8556 -10.9100 0.3780 20 6 2.5466 -11.1094 -0.9733 21 6 2.2442 -3.6635 0.0057 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3675 -1.7785 1.2289 24 1 0.9900 -2.4821 2.1412 25 1 -0.9423 -4.0152 2.1816 26 1 -0.9975 -4.0153 0.4021 27 1 1.3340 -4.9838 2.1184 28 1 0.1846 -6.0216 1.2412 29 1 3.0898 -5.9098 -0.9569 30 1 3.0191 -6.1734 0.8020 31 1 0.9565 -7.5200 0.5172 32 1 1.0272 -7.2562 -1.2417 33 1 3.2380 -8.3775 -1.3201 34 1 3.1666 -8.6408 0.4388 35 1 0.8116 -9.6931 -1.2026 36 1 2.4891 -10.7133 1.2429 37 1 0.9581 -11.4961 0.5756 38 1 2.1033 -11.8267 -1.6642 39 1 3.6343 -11.0439 -0.9976 40 1 2.8636 -3.6164 -0.8900 41 1 2.8784 -3.5960 0.8897 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000406039286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:09 Heat of formation + Delta-G solvation = -0.292635 kcal Electronic energy + Delta-G solvation = -16959.647135 eV Core-core repulsion = 14452.983671 eV Total energy + Delta-G solvation = -2506.663464 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.46142 -37.61844 -34.41930 -32.52470 -30.87315 -29.75846 -26.11113 -24.92606 -22.73158 -22.47945 -21.66829 -20.47504 -20.28704 -18.54051 -16.36624 -15.83896 -15.19746 -14.86160 -14.45116 -14.40643 -13.88363 -13.32900 -13.00508 -12.60082 -12.40594 -12.06725 -11.85101 -11.72822 -11.66023 -11.32981 -10.98044 -10.92452 -10.73559 -10.62480 -10.46053 -10.26375 -10.06368 -9.88843 -9.78283 -9.42379 -8.95265 -8.65190 -8.27040 -7.58526 -5.94291 -4.00330 3.31735 3.39671 3.43488 3.64767 4.34477 4.48725 4.70279 4.78711 4.83871 5.12603 5.28170 5.35539 5.37997 5.45404 5.64274 5.72691 5.74319 5.82282 5.87104 5.92852 5.94908 5.99177 6.14102 6.16160 6.30213 6.38065 6.48463 6.50640 6.56997 6.77590 6.80802 7.02559 7.27116 7.45695 7.74107 7.79723 7.90388 8.13158 8.21870 8.52449 9.04108 9.63771 11.11648 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.055378 B = 0.004190 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.495596 B = 6680.269401 C = 6998.253086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.061 3.939 14 N -0.540 5.540 15 C 0.055 3.945 16 C -0.112 4.112 17 C -0.088 4.088 18 C -0.148 4.148 19 C -0.183 4.183 20 C -0.185 4.185 21 C 0.068 3.932 22 H 0.259 0.741 23 H 0.090 0.910 24 H 0.029 0.971 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.674 -16.989 0.676 17.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.067 4.067 14 N -0.264 5.264 15 C -0.073 4.073 16 C -0.150 4.150 17 C -0.126 4.126 18 C -0.166 4.166 19 C -0.220 4.220 20 C -0.222 4.222 21 C -0.059 4.059 22 H 0.068 0.932 23 H 0.109 0.891 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.216 -16.857 0.276 17.004 hybrid contribution 1.026 0.878 0.769 1.554 sum 3.242 -15.979 1.045 16.338 Atomic orbital electron populations 1.69905 1.05829 1.26151 1.50851 1.24942 0.94831 0.98946 0.95196 0.86575 0.80130 0.83987 0.77513 1.19873 1.21048 1.21127 1.21201 0.92858 0.90719 1.50448 0.92829 1.18670 0.92648 0.90311 0.94850 0.94790 1.21648 1.00024 0.94760 0.98425 1.21677 0.97235 0.96549 1.00094 1.22065 0.95675 0.98724 0.90188 1.61975 1.24134 1.02309 1.37974 1.22065 0.94482 0.91025 0.99771 1.21581 0.98072 0.92769 1.02565 1.21166 0.97474 0.92480 1.01493 1.22379 1.01033 0.90121 1.03039 1.23036 1.02830 1.03259 0.92911 1.22968 0.99430 1.00400 0.99442 1.22296 0.96378 0.88629 0.98601 0.93151 0.89137 0.95262 0.93663 0.92142 0.96169 0.92191 0.91364 0.95917 0.91989 0.91154 0.91614 0.92182 0.87763 0.88934 0.89099 0.89074 0.88954 0.92382 0.96481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 11.35 55.43 0.63 -25.00 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.30 8.57 -34.44 -0.30 -14.59 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.68 5.03 -26.61 -0.13 -2.81 16 12 C -0.12 -2.37 6.09 -26.65 -0.16 -2.53 16 13 C 0.06 1.12 5.29 -3.83 -0.02 1.10 16 14 N -0.54 -10.27 4.66 -234.68 -1.09 -11.36 16 15 C 0.05 0.85 4.96 -3.83 -0.02 0.83 16 16 C -0.11 -1.44 5.10 -26.73 -0.14 -1.57 16 17 C -0.09 -0.94 5.50 -26.73 -0.15 -1.09 16 18 C -0.15 -1.44 5.73 -90.62 -0.52 -1.96 16 19 C -0.18 -1.63 10.18 -26.69 -0.27 -1.90 16 20 C -0.19 -1.60 10.25 -26.70 -0.27 -1.87 16 21 C 0.07 1.49 4.69 -3.84 -0.02 1.47 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.96 6.21 -51.93 -0.32 0.64 16 29 H 0.07 1.03 7.99 -51.93 -0.41 0.61 16 30 H 0.02 0.35 8.12 -51.93 -0.42 -0.08 16 31 H 0.06 0.81 6.43 -51.92 -0.33 0.47 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 34 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 35 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 1.25 8.02 -51.93 -0.42 0.84 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -28.25 318.33 -10.65 -38.90 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.67 Total: -1.65 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: -2.30 Total: -22.12 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.46 Total: -36.35 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.25 -10.65 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406039286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.608 kcal (2) G-P(sol) polarization free energy of solvation -28.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds