Wall clock time and date at job start Sun Mar 29 2020 22:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99787 * 2 1 4 4 H 1.48502 * 109.46819 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47304 * 299.99692 * 3 2 1 6 6 H 1.48504 * 109.47251 * 59.99917 * 3 2 1 7 7 C 1.37882 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99829 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.50834 * 60.07582 * 9 7 2 11 11 C 1.53125 * 109.50700 * 300.00210 * 9 7 2 12 12 C 1.53114 * 109.16368 * 182.36705 * 11 9 7 13 13 C 1.53037 * 109.31211 * 57.63311 * 12 11 9 14 14 N 1.46854 * 109.52285 * 300.88400 * 13 12 11 15 15 C 1.46895 * 110.99648 * 185.80147 * 14 13 12 16 16 C 1.52996 * 109.47373 * 65.74825 * 15 14 13 17 17 C 1.53000 * 109.47631 * 180.02562 * 16 15 14 18 18 C 1.52996 * 109.47631 * 179.97438 * 17 16 15 19 19 C 1.53008 * 117.49691 * 243.74828 * 18 17 16 20 20 C 1.52994 * 117.49969 * 175.08969 * 18 17 16 21 21 C 1.46840 * 111.23238 * 61.67711 * 14 13 12 22 22 H 0.97000 * 120.00219 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.52257 * 62.45898 * 11 9 7 24 24 H 1.09004 * 109.56800 * 302.30607 * 11 9 7 25 25 H 1.09002 * 109.50377 * 177.59436 * 12 11 9 26 26 H 1.09003 * 109.50316 * 297.67431 * 12 11 9 27 27 H 1.09000 * 109.46159 * 60.85546 * 13 12 11 28 28 H 1.09000 * 109.46461 * 180.82902 * 13 12 11 29 29 H 1.09006 * 109.47095 * 185.74417 * 15 14 13 30 30 H 1.08994 * 109.47117 * 305.74495 * 15 14 13 31 31 H 1.09008 * 109.47411 * 299.99935 * 16 15 14 32 32 H 1.09003 * 109.47446 * 59.99598 * 16 15 14 33 33 H 1.09007 * 109.47097 * 300.00148 * 17 16 15 34 34 H 1.09003 * 109.47096 * 59.99307 * 17 16 15 35 35 H 1.09000 * 115.55156 * 29.41247 * 18 17 16 36 36 H 1.08995 * 117.49550 * 359.97438 * 19 18 17 37 37 H 1.09000 * 117.49876 * 145.01922 * 19 18 17 38 38 H 1.09012 * 117.49583 * 214.97563 * 20 18 17 39 39 H 1.08997 * 117.50285 * 359.97079 * 20 18 17 40 40 H 1.09001 * 109.46294 * 178.26219 * 21 14 13 41 41 H 1.09003 * 109.45458 * 58.29272 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6256 -2.5583 -0.8902 11 6 0.3699 -2.5808 1.2502 12 6 -0.3465 -3.9339 1.2725 13 6 0.6924 -5.0572 1.2403 14 7 1.5099 -4.9349 0.0265 15 6 2.4268 -6.0747 -0.1076 16 6 1.6196 -7.3549 -0.3320 17 6 2.5745 -8.5423 -0.4710 18 6 1.7673 -9.8226 -0.6948 19 6 1.8556 -10.9100 0.3780 20 6 2.5466 -11.1094 -0.9733 21 6 2.2442 -3.6635 0.0057 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3675 -1.7785 1.2289 24 1 0.9900 -2.4821 2.1412 25 1 -0.9423 -4.0152 2.1816 26 1 -0.9975 -4.0153 0.4021 27 1 1.3340 -4.9838 2.1184 28 1 0.1846 -6.0216 1.2412 29 1 3.0898 -5.9098 -0.9569 30 1 3.0191 -6.1734 0.8020 31 1 0.9565 -7.5200 0.5172 32 1 1.0272 -7.2562 -1.2417 33 1 3.2380 -8.3775 -1.3201 34 1 3.1666 -8.6408 0.4388 35 1 0.8116 -9.6931 -1.2026 36 1 2.4891 -10.7133 1.2429 37 1 0.9581 -11.4961 0.5756 38 1 2.1033 -11.8267 -1.6642 39 1 3.6343 -11.0439 -0.9976 40 1 2.8636 -3.6164 -0.8900 41 1 2.8784 -3.5960 0.8897 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000406039286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:09 Heat of formation + Delta-G solvation = -14.834480 kcal Electronic energy + Delta-G solvation = -16960.277717 eV Core-core repulsion = 14452.983671 eV Total energy + Delta-G solvation = -2507.294045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.94694 -38.50457 -36.02455 -34.22926 -32.31713 -31.59942 -27.36163 -26.90523 -24.13640 -23.38858 -23.17444 -21.65810 -21.25906 -20.34497 -18.41491 -16.90394 -16.64884 -16.31917 -15.89436 -15.50829 -15.22674 -14.89853 -14.56244 -14.38297 -14.05391 -13.42226 -13.11852 -13.00674 -12.86061 -12.66466 -12.49511 -12.43318 -12.33255 -11.89898 -11.87617 -11.71665 -11.53686 -11.37673 -11.09204 -10.73892 -10.68942 -10.64150 -10.37139 -9.11194 -8.07986 -6.22439 1.40265 1.41663 1.53320 2.42777 2.94407 3.10992 3.18654 3.78701 4.01870 4.07692 4.15353 4.20955 4.29405 4.34047 4.38334 4.53041 4.62775 4.67301 4.73393 4.82471 4.86592 4.88106 4.92841 4.94280 5.02033 5.10440 5.12053 5.20161 5.29600 5.32246 5.35980 5.42694 5.51345 5.54262 5.63712 5.97350 6.13046 6.22113 6.40704 6.46867 6.90427 7.45428 8.96808 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.055378 B = 0.004190 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.495596 B = 6680.269401 C = 6998.253086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.051 0.949 9 C 0.052 3.948 10 H -0.004 1.004 11 C -0.104 4.104 12 C -0.112 4.112 13 C 0.065 3.935 14 N -0.551 5.551 15 C 0.055 3.945 16 C -0.102 4.102 17 C -0.081 4.081 18 C -0.160 4.160 19 C -0.183 4.183 20 C -0.181 4.181 21 C 0.081 3.919 22 H 0.260 0.740 23 H 0.058 0.942 24 H 0.021 0.979 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.383 -18.426 1.120 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.069 0.931 9 C 0.033 3.967 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.149 4.149 13 C -0.062 4.062 14 N -0.275 5.275 15 C -0.073 4.073 16 C -0.139 4.139 17 C -0.119 4.119 18 C -0.179 4.179 19 C -0.220 4.220 20 C -0.218 4.218 21 C -0.046 4.046 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.040 0.960 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 2.931 -18.314 0.720 18.561 hybrid contribution 0.787 1.308 0.611 1.644 sum 3.718 -17.007 1.331 17.459 Atomic orbital electron populations 1.70045 1.07185 1.27018 1.51244 1.25744 0.95699 1.02394 0.94762 0.85541 0.79042 0.79637 0.77627 1.19174 1.20555 1.20566 1.21559 0.92979 0.92224 1.50774 0.93100 1.18598 0.93020 0.91346 0.93763 0.98555 1.21462 0.99110 0.96363 0.97298 1.21597 0.97586 0.94876 1.00876 1.22065 0.95128 0.99162 0.89857 1.61929 1.24815 1.02120 1.38654 1.22161 0.94370 0.90593 1.00127 1.21482 0.98068 0.92196 1.02203 1.21076 0.97061 0.91961 1.01793 1.22336 1.01171 0.90156 1.04202 1.23114 1.03223 1.02648 0.92984 1.23048 0.99675 0.99573 0.99458 1.21973 0.95312 0.89110 0.98254 0.93051 0.92344 0.96017 0.91235 0.93119 0.95929 0.89138 0.91239 0.95279 0.91806 0.91893 0.91466 0.91760 0.87997 0.88715 0.88380 0.88191 0.88536 0.92621 0.96906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 11.35 21.45 0.24 -53.83 16 2 C 0.01 0.72 5.30 84.66 0.45 1.17 16 3 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 7 C -0.54 -30.54 8.57 25.60 0.22 -30.32 16 8 H 0.05 2.84 7.74 -2.92 -0.02 2.82 16 9 C 0.05 2.71 2.26 -11.49 -0.03 2.68 16 10 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 11 C -0.10 -5.14 5.03 30.67 0.15 -4.99 16 12 C -0.11 -4.41 6.09 30.64 0.19 -4.22 16 13 C 0.07 2.26 5.29 86.32 0.46 2.72 16 14 N -0.55 -20.41 4.66 -896.38 -4.17 -24.58 16 15 C 0.06 1.60 4.96 86.30 0.43 2.03 16 16 C -0.10 -2.39 5.10 30.59 0.16 -2.24 16 17 C -0.08 -1.55 5.50 30.59 0.17 -1.38 16 18 C -0.16 -2.79 5.73 -10.79 -0.06 -2.85 16 19 C -0.18 -2.80 10.18 30.62 0.31 -2.49 16 20 C -0.18 -2.68 10.25 30.62 0.31 -2.36 16 21 C 0.08 3.57 4.69 86.33 0.40 3.98 16 22 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16 23 H 0.06 3.25 6.15 -2.39 -0.01 3.23 16 24 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.07 2.39 8.14 -2.39 -0.02 2.38 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 2.61 6.21 -2.39 -0.01 2.60 16 29 H 0.07 1.99 7.99 -2.38 -0.02 1.98 16 30 H 0.03 0.82 8.12 -2.39 -0.02 0.80 16 31 H 0.06 1.48 6.43 -2.38 -0.02 1.47 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.06 1.18 7.87 -2.39 -0.02 1.16 16 35 H 0.10 1.82 8.08 -2.39 -0.02 1.80 16 36 H 0.09 1.41 8.03 -2.39 -0.02 1.39 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.06 2.43 8.02 -2.39 -0.02 2.41 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -61.08 318.33 2.21 -58.87 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.95 Total: 11.41 kcal Atomic # 6 Polarization: -41.44 SS G_CDS: 3.16 Total: -38.28 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -3.93 Total: -78.41 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.08 2.21 -58.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000406039286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.035 kcal (2) G-P(sol) polarization free energy of solvation -61.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds