Wall clock time and date at job start Sun Mar 29 2020 22:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47200 * 2 1 4 4 H 1.08996 * 109.47096 * 54.78279 * 3 2 1 5 5 N 1.46894 * 109.46982 * 294.78373 * 3 2 1 6 6 C 1.46903 * 110.99974 * 111.96698 * 5 3 2 7 7 C 1.53004 * 109.46734 * 85.97482 * 6 5 3 8 8 C 1.50697 * 115.54946 * 56.30435 * 7 6 5 9 9 H 1.08001 * 119.99886 * 268.38774 * 8 7 6 10 10 C 1.37878 * 119.99886 * 88.39447 * 8 7 6 11 11 N 1.31520 * 119.99891 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00319 * 359.95004 * 10 8 7 13 13 H 1.48498 * 109.47104 * 92.03471 * 12 10 8 14 14 H 1.48499 * 109.47404 * 212.03795 * 12 10 8 15 15 H 1.48501 * 109.47045 * 332.03602 * 12 10 8 16 16 C 1.52992 * 117.49822 * 270.63083 * 7 6 5 17 17 C 1.53006 * 117.49624 * 201.97236 * 7 6 5 18 18 C 1.52999 * 109.47054 * 174.78203 * 3 2 1 19 19 H 1.09006 * 115.55772 * 85.70577 * 18 3 2 20 20 C 1.52999 * 117.49882 * 231.38778 * 18 3 2 21 21 C 1.53001 * 60.03078 * 107.50564 * 20 18 3 22 22 H 1.09003 * 117.50227 * 252.48059 * 21 20 18 23 23 C 1.53004 * 117.49940 * 107.47818 * 21 20 18 24 24 H 1.09003 * 109.46824 * 303.74972 * 1 2 3 25 25 H 1.08996 * 109.47163 * 63.75194 * 1 2 3 26 26 H 1.08997 * 109.46932 * 183.75473 * 1 2 3 27 27 H 1.08992 * 109.47152 * 240.00155 * 2 1 3 28 28 H 1.08999 * 109.47230 * 119.99416 * 2 1 3 29 29 H 1.00908 * 111.00288 * 348.01719 * 5 3 2 30 30 H 1.08999 * 109.47239 * 205.97341 * 6 5 3 31 31 H 1.08996 * 109.47162 * 325.97129 * 6 5 3 32 32 H 0.97001 * 119.99606 * 179.97438 * 11 10 8 33 33 H 1.09007 * 117.50079 * 0.02562 * 16 7 6 34 34 H 1.09001 * 117.50212 * 145.02379 * 16 7 6 35 35 H 1.08993 * 117.49909 * 214.97985 * 17 7 6 36 36 H 1.09006 * 117.49666 * 359.97438 * 17 7 6 37 37 H 1.09003 * 117.49646 * 0.02562 * 20 18 3 38 38 H 1.08998 * 117.50018 * 215.00643 * 20 18 3 39 39 H 1.09000 * 109.46849 * 111.39061 * 23 21 20 40 40 H 1.08996 * 109.46816 * 231.39195 * 23 21 20 41 41 H 1.08999 * 109.46922 * 351.38955 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6024 1.9826 0.8395 5 7 1.6559 2.0977 -1.2574 6 6 0.6583 3.1496 -1.0196 7 6 1.3700 4.4553 -0.6597 8 6 2.3759 4.9466 -1.6685 9 1 3.4131 4.6581 -1.5816 10 6 1.9723 5.7646 -2.7024 11 7 2.8503 6.1939 -3.5826 12 14 0.1783 6.2627 -2.8536 13 1 -0.0409 7.5464 -2.1399 14 1 -0.1706 6.4277 -4.2876 15 1 -0.6800 5.2099 -2.2534 16 6 1.6683 4.7131 0.8185 17 6 0.5689 5.5078 0.1094 18 6 3.5644 1.4445 0.1312 19 1 4.1169 1.3418 -0.8028 20 6 4.1784 2.3241 1.2221 21 6 4.1673 0.8026 1.3832 22 1 3.4781 0.3788 2.1137 23 6 5.4992 0.0660 1.2278 24 1 -0.3633 0.5710 0.8545 25 1 -0.3633 0.4545 -0.9217 26 1 -0.3633 -1.0254 0.0673 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.3177 1.4236 -1.9278 30 1 0.0634 3.2965 -1.9210 31 1 0.0062 2.8528 -0.1982 32 1 2.5662 6.7690 -4.3102 33 1 1.3578 3.9522 1.5348 34 1 2.5919 5.2384 1.0615 35 1 0.7697 6.5555 -0.1140 36 1 -0.4654 5.2700 0.3586 37 1 3.4963 2.9010 1.8467 38 1 5.1347 2.8003 1.0058 39 1 5.8062 -0.3371 2.1928 40 1 5.3823 -0.7494 0.5140 41 1 6.2580 0.7597 0.8657 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414157190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:19 Heat of formation + Delta-G solvation = 40.419244 kcal Electronic energy + Delta-G solvation = -17913.431070 eV Core-core repulsion = 15408.533005 eV Total energy + Delta-G solvation = -2504.898064 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.68636 -36.85842 -34.97650 -31.87421 -31.34846 -28.72672 -26.56880 -25.41956 -23.50691 -21.67805 -21.54477 -20.49580 -19.51073 -18.69779 -16.08682 -15.32924 -15.21404 -14.83637 -14.44909 -13.83466 -13.68129 -13.12449 -12.89746 -12.76851 -12.58496 -12.38351 -12.21514 -11.70078 -11.54681 -11.19790 -11.13851 -10.95071 -10.76032 -10.64622 -10.37736 -10.30124 -9.92688 -9.53613 -9.44515 -9.22457 -8.86914 -8.40228 -8.28698 -7.51071 -5.90153 -3.86941 3.38185 3.47309 3.50863 4.14290 4.57316 4.66226 4.99614 5.06007 5.15002 5.27079 5.37810 5.40133 5.42495 5.51538 5.59594 5.80896 5.90205 5.92018 5.99815 6.02055 6.04914 6.08382 6.16485 6.19005 6.21305 6.30852 6.34254 6.37878 6.44889 6.55110 6.60197 6.61266 6.81633 6.86423 7.17925 7.30229 7.82223 8.01332 8.19548 8.77284 9.18766 9.74306 11.22996 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024890 B = 0.008122 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.689880 B = 3446.522363 C = 3851.172899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.143 4.143 3 C 0.122 3.878 4 H 0.064 0.936 5 N -0.655 5.655 6 C 0.099 3.901 7 C 0.021 3.979 8 C -0.446 4.446 9 H 0.078 0.922 10 C 0.068 3.932 11 N -0.908 5.908 12 Si 0.878 3.122 13 H -0.284 1.284 14 H -0.299 1.299 15 H -0.262 1.262 16 C -0.179 4.179 17 C -0.213 4.213 18 C -0.111 4.111 19 H 0.105 0.895 20 C -0.163 4.163 21 C -0.173 4.173 22 H 0.094 0.906 23 C -0.117 4.117 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.329 0.671 30 H 0.060 0.940 31 H 0.010 0.990 32 H 0.260 0.740 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 -11.791 8.771 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.182 4.182 3 C 0.011 3.989 4 H 0.083 0.917 5 N -0.284 5.284 6 C -0.030 4.030 7 C 0.020 3.980 8 C -0.484 4.484 9 H 0.096 0.904 10 C -0.131 4.131 11 N -0.547 5.547 12 Si 0.708 3.292 13 H -0.211 1.211 14 H -0.226 1.226 15 H -0.187 1.187 16 C -0.216 4.216 17 C -0.251 4.251 18 C -0.130 4.130 19 H 0.123 0.877 20 C -0.200 4.200 21 C -0.192 4.192 22 H 0.112 0.888 23 C -0.175 4.175 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.147 0.853 30 H 0.078 0.922 31 H 0.028 0.972 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.831 -11.242 8.591 14.267 hybrid contribution -1.814 -0.019 0.037 1.814 sum -3.645 -11.261 8.628 14.647 Atomic orbital electron populations 1.21824 0.96367 1.01131 1.01840 1.22111 0.95308 0.98371 1.02374 1.21173 0.92889 0.91772 0.93024 0.91747 1.59960 1.44874 1.14136 1.09450 1.21742 0.90990 0.92136 0.98159 1.19415 0.96695 0.91140 0.90775 1.20140 0.94524 1.26669 1.07051 0.90370 1.24951 0.96638 0.95978 0.95569 1.69903 1.33793 1.35696 1.15296 0.86898 0.87054 0.79253 0.76021 1.21063 1.22611 1.18707 1.22766 0.98984 1.02488 0.97337 1.23005 0.94685 0.98444 1.08948 1.22312 0.95253 1.02507 0.92966 0.87671 1.23047 1.02608 0.91529 1.02771 1.22408 0.99034 0.95870 1.01883 0.88835 1.21302 0.95449 0.99781 1.00930 0.93027 0.92762 0.93010 0.91597 0.91774 0.85292 0.92192 0.97180 0.93066 0.91852 0.89877 0.89655 0.91521 0.89171 0.89328 0.92948 0.92709 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.47 37.16 0.35 -1.48 16 2 C -0.14 -1.81 5.13 -26.73 -0.14 -1.94 16 3 C 0.12 1.90 2.23 -67.71 -0.15 1.75 16 4 H 0.06 1.08 5.69 -51.93 -0.30 0.78 16 5 N -0.66 -12.07 5.81 -106.72 -0.62 -12.69 16 6 C 0.10 2.00 5.25 -3.82 -0.02 1.98 16 7 C 0.02 0.49 0.98 -155.66 -0.15 0.34 16 8 C -0.45 -12.40 9.16 -34.44 -0.32 -12.71 16 9 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 10 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 11 N -0.91 -28.10 13.96 55.43 0.77 -27.33 16 12 Si 0.88 22.09 24.83 -169.99 -4.22 17.87 16 13 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 14 H -0.30 -7.62 7.11 56.52 0.40 -7.21 16 15 H -0.26 -6.20 5.67 56.52 0.32 -5.88 16 16 C -0.18 -3.67 8.98 -26.70 -0.24 -3.91 16 17 C -0.21 -4.63 7.46 -26.69 -0.20 -4.83 16 18 C -0.11 -1.76 5.18 -90.58 -0.47 -2.23 16 19 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 20 C -0.16 -2.54 9.82 -26.73 -0.26 -2.80 16 21 C -0.17 -2.29 5.55 -90.58 -0.50 -2.79 16 22 H 0.09 1.16 7.59 -51.93 -0.39 0.77 16 23 C -0.12 -1.35 10.19 37.16 0.38 -0.98 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.68 7.33 -51.93 -0.38 0.29 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 28 H 0.06 0.75 7.12 -51.93 -0.37 0.38 16 29 H 0.33 5.48 7.56 -39.29 -0.30 5.19 16 30 H 0.06 1.27 6.75 -51.93 -0.35 0.92 16 31 H 0.01 0.19 7.35 -51.93 -0.38 -0.19 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.06 1.17 7.17 -51.93 -0.37 0.79 16 34 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.09 1.97 7.04 -51.93 -0.37 1.60 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.09 1.44 7.48 -51.93 -0.39 1.05 16 38 H 0.09 1.41 8.05 -51.93 -0.42 0.99 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.66 7.90 -51.93 -0.41 0.25 16 LS Contribution 317.81 15.07 4.79 4.79 Total: -1.00 -29.57 317.81 -8.53 -38.11 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.44 Total: 6.97 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: -1.82 Total: -27.72 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.15 Total: -40.02 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.22 Total: 17.87 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.57 -8.53 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414157190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.528 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds