Wall clock time and date at job start Sun Mar 29 2020 22:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47200 * 2 1 4 4 H 1.08996 * 109.47096 * 54.78279 * 3 2 1 5 5 N 1.46894 * 109.46982 * 294.78373 * 3 2 1 6 6 C 1.46903 * 110.99974 * 111.96698 * 5 3 2 7 7 C 1.53004 * 109.46734 * 85.97482 * 6 5 3 8 8 C 1.50697 * 115.54946 * 56.30435 * 7 6 5 9 9 H 1.08001 * 119.99886 * 268.38774 * 8 7 6 10 10 C 1.37878 * 119.99886 * 88.39447 * 8 7 6 11 11 N 1.31520 * 119.99891 * 179.97438 * 10 8 7 12 12 Si 1.86796 * 120.00319 * 359.95004 * 10 8 7 13 13 H 1.48498 * 109.47104 * 92.03471 * 12 10 8 14 14 H 1.48499 * 109.47404 * 212.03795 * 12 10 8 15 15 H 1.48501 * 109.47045 * 332.03602 * 12 10 8 16 16 C 1.52992 * 117.49822 * 270.63083 * 7 6 5 17 17 C 1.53006 * 117.49624 * 201.97236 * 7 6 5 18 18 C 1.52999 * 109.47054 * 174.78203 * 3 2 1 19 19 H 1.09006 * 115.55772 * 85.70577 * 18 3 2 20 20 C 1.52999 * 117.49882 * 231.38778 * 18 3 2 21 21 C 1.53001 * 60.03078 * 107.50564 * 20 18 3 22 22 H 1.09003 * 117.50227 * 252.48059 * 21 20 18 23 23 C 1.53004 * 117.49940 * 107.47818 * 21 20 18 24 24 H 1.09003 * 109.46824 * 303.74972 * 1 2 3 25 25 H 1.08996 * 109.47163 * 63.75194 * 1 2 3 26 26 H 1.08997 * 109.46932 * 183.75473 * 1 2 3 27 27 H 1.08992 * 109.47152 * 240.00155 * 2 1 3 28 28 H 1.08999 * 109.47230 * 119.99416 * 2 1 3 29 29 H 1.00908 * 111.00288 * 348.01719 * 5 3 2 30 30 H 1.08999 * 109.47239 * 205.97341 * 6 5 3 31 31 H 1.08996 * 109.47162 * 325.97129 * 6 5 3 32 32 H 0.97001 * 119.99606 * 179.97438 * 11 10 8 33 33 H 1.09007 * 117.50079 * 0.02562 * 16 7 6 34 34 H 1.09001 * 117.50212 * 145.02379 * 16 7 6 35 35 H 1.08993 * 117.49909 * 214.97985 * 17 7 6 36 36 H 1.09006 * 117.49666 * 359.97438 * 17 7 6 37 37 H 1.09003 * 117.49646 * 0.02562 * 20 18 3 38 38 H 1.08998 * 117.50018 * 215.00643 * 20 18 3 39 39 H 1.09000 * 109.46849 * 111.39061 * 23 21 20 40 40 H 1.08996 * 109.46816 * 231.39195 * 23 21 20 41 41 H 1.08999 * 109.46922 * 351.38955 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6024 1.9826 0.8395 5 7 1.6559 2.0977 -1.2574 6 6 0.6583 3.1496 -1.0196 7 6 1.3700 4.4553 -0.6597 8 6 2.3759 4.9466 -1.6685 9 1 3.4131 4.6581 -1.5816 10 6 1.9723 5.7646 -2.7024 11 7 2.8503 6.1939 -3.5826 12 14 0.1783 6.2627 -2.8536 13 1 -0.0409 7.5464 -2.1399 14 1 -0.1706 6.4277 -4.2876 15 1 -0.6800 5.2099 -2.2534 16 6 1.6683 4.7131 0.8185 17 6 0.5689 5.5078 0.1094 18 6 3.5644 1.4445 0.1312 19 1 4.1169 1.3418 -0.8028 20 6 4.1784 2.3241 1.2221 21 6 4.1673 0.8026 1.3832 22 1 3.4781 0.3788 2.1137 23 6 5.4992 0.0660 1.2278 24 1 -0.3633 0.5710 0.8545 25 1 -0.3633 0.4545 -0.9217 26 1 -0.3633 -1.0254 0.0673 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.3177 1.4236 -1.9278 30 1 0.0634 3.2965 -1.9210 31 1 0.0062 2.8528 -0.1982 32 1 2.5662 6.7690 -4.3102 33 1 1.3578 3.9522 1.5348 34 1 2.5919 5.2384 1.0615 35 1 0.7697 6.5555 -0.1140 36 1 -0.4654 5.2700 0.3586 37 1 3.4963 2.9010 1.8467 38 1 5.1347 2.8003 1.0058 39 1 5.8062 -0.3371 2.1928 40 1 5.3823 -0.7494 0.5140 41 1 6.2580 0.7597 0.8657 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414157190.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:18 Heat of formation + Delta-G solvation = 22.631480 kcal Electronic energy + Delta-G solvation = -17914.202405 eV Core-core repulsion = 15408.533005 eV Total energy + Delta-G solvation = -2505.669399 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01390 -38.43128 -36.27270 -34.06970 -32.57858 -29.79025 -28.07299 -27.22935 -25.01843 -23.35391 -22.64180 -21.70288 -20.83561 -20.48659 -18.08875 -16.89304 -16.52570 -16.31573 -15.93359 -15.34618 -14.94494 -14.71904 -14.45108 -14.14635 -13.81321 -13.69688 -13.42429 -13.19455 -12.92165 -12.75324 -12.43460 -12.24465 -12.14770 -12.13196 -12.00155 -11.67912 -11.63004 -11.33924 -10.83602 -10.69353 -10.47560 -10.44527 -10.08840 -8.92139 -8.14188 -6.14552 1.38704 1.40704 1.53066 2.45913 2.93475 3.20757 3.23326 3.51938 3.91556 4.00220 4.19714 4.26570 4.31770 4.35258 4.44304 4.45115 4.51718 4.58749 4.61790 4.66365 4.88046 4.88814 4.98108 5.01139 5.01944 5.04143 5.10968 5.13623 5.15881 5.21832 5.23754 5.42664 5.45730 5.48256 5.57876 5.62642 5.84990 6.42666 6.60879 6.84467 6.92524 7.50015 9.03009 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024890 B = 0.008122 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.689880 B = 3446.522363 C = 3851.172899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.134 4.134 3 C 0.127 3.873 4 H 0.059 0.941 5 N -0.678 5.678 6 C 0.108 3.892 7 C -0.003 4.003 8 C -0.435 4.435 9 H 0.025 0.975 10 C 0.007 3.993 11 N -0.962 5.962 12 Si 0.940 3.060 13 H -0.280 1.280 14 H -0.305 1.305 15 H -0.231 1.231 16 C -0.159 4.159 17 C -0.209 4.209 18 C -0.129 4.129 19 H 0.079 0.921 20 C -0.183 4.183 21 C -0.138 4.138 22 H 0.114 0.886 23 C -0.119 4.119 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.338 0.662 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.258 0.742 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 -13.718 10.800 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C 0.017 3.983 4 H 0.077 0.923 5 N -0.309 5.309 6 C -0.021 4.021 7 C -0.004 4.004 8 C -0.473 4.473 9 H 0.043 0.957 10 C -0.187 4.187 11 N -0.604 5.604 12 Si 0.767 3.233 13 H -0.206 1.206 14 H -0.233 1.233 15 H -0.154 1.154 16 C -0.196 4.196 17 C -0.247 4.247 18 C -0.148 4.148 19 H 0.097 0.903 20 C -0.220 4.220 21 C -0.157 4.157 22 H 0.132 0.868 23 C -0.176 4.176 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.157 0.843 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.132 -13.195 10.649 17.453 hybrid contribution -0.928 0.561 -0.564 1.223 sum -5.060 -12.634 10.085 16.939 Atomic orbital electron populations 1.21805 0.95431 1.02314 1.01368 1.22016 0.95999 0.96080 1.03157 1.21146 0.92348 0.93460 0.91315 0.92314 1.59864 1.44815 1.14835 1.11361 1.21524 0.91072 0.91064 0.98448 1.19366 0.97097 0.93121 0.90839 1.20226 0.93432 1.25673 1.08018 0.95696 1.25781 1.01246 0.96372 0.95334 1.70077 1.36303 1.37481 1.16568 0.85887 0.81961 0.79722 0.75758 1.20577 1.23272 1.15430 1.22717 0.98193 1.02417 0.96300 1.23050 0.96455 0.97105 1.08080 1.22278 0.95606 1.04217 0.92745 0.90306 1.23037 1.02009 0.93486 1.03432 1.22486 0.99629 0.93817 0.99756 0.86840 1.21353 0.94215 0.99642 1.02411 0.93024 0.93597 0.91118 0.91532 0.90216 0.84312 0.93320 0.94516 0.93295 0.88763 0.91436 0.91378 0.88374 0.89462 0.90854 0.90741 0.91804 0.93700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.47 71.98 0.68 -2.38 16 2 C -0.13 -2.98 5.13 30.60 0.16 -2.83 16 3 C 0.13 3.75 2.23 44.92 0.10 3.85 16 4 H 0.06 1.80 5.69 -2.39 -0.01 1.79 16 5 N -0.68 -24.40 5.81 -491.57 -2.85 -27.26 16 6 C 0.11 4.16 5.25 86.30 0.45 4.61 16 7 C 0.00 -0.12 0.98 -52.93 -0.05 -0.17 16 8 C -0.44 -24.94 9.16 25.60 0.23 -24.71 16 9 H 0.02 1.65 8.06 -2.91 -0.02 1.62 16 10 C 0.01 0.42 5.47 84.65 0.46 0.88 16 11 N -0.96 -62.16 13.96 21.45 0.30 -61.86 16 12 Si 0.94 45.63 24.83 68.60 1.70 47.33 16 13 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 14 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 15 H -0.23 -9.99 5.67 99.48 0.56 -9.42 16 16 C -0.16 -6.26 8.98 30.62 0.28 -5.99 16 17 C -0.21 -8.53 7.46 30.62 0.23 -8.31 16 18 C -0.13 -4.03 5.18 -10.77 -0.06 -4.09 16 19 H 0.08 2.86 8.14 -2.38 -0.02 2.84 16 20 C -0.18 -5.69 9.82 30.59 0.30 -5.39 16 21 C -0.14 -3.38 5.55 -10.77 -0.06 -3.44 16 22 H 0.11 2.37 7.59 -2.39 -0.02 2.36 16 23 C -0.12 -2.51 10.19 71.98 0.73 -1.77 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 25 H 0.04 1.00 7.33 -2.39 -0.02 0.98 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 28 H 0.08 1.55 7.12 -2.39 -0.02 1.53 16 29 H 0.34 10.93 7.56 -89.69 -0.68 10.25 16 30 H 0.05 1.95 6.75 -2.39 -0.02 1.94 16 31 H 0.04 1.22 7.35 -2.39 -0.02 1.20 16 32 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 33 H 0.09 3.14 7.17 -2.38 -0.02 3.13 16 34 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.07 3.02 7.04 -2.39 -0.02 3.00 16 36 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 37 H 0.09 2.73 7.48 -2.39 -0.02 2.71 16 38 H 0.07 2.45 8.05 -2.39 -0.02 2.43 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.04 1.04 7.90 -2.39 -0.02 1.02 16 Total: -1.00 -66.41 317.81 2.77 -63.65 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.16 Total: 27.88 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 3.46 Total: -49.74 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -2.56 Total: -89.12 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.70 Total: 47.33 kcal Total: -66.41 2.77 -63.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414157190.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.277 kcal (2) G-P(sol) polarization free energy of solvation -66.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds