Wall clock time and date at job start Sun Mar 29 2020 22:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46934 * 2 1 4 4 H 1.09005 * 109.47230 * 57.72705 * 3 2 1 5 5 N 1.46897 * 109.47336 * 297.72418 * 3 2 1 6 6 C 1.46895 * 111.00157 * 100.78734 * 5 3 2 7 7 C 1.53000 * 109.47571 * 86.06929 * 6 5 3 8 8 C 1.50699 * 115.54834 * 39.71869 * 7 6 5 9 9 H 1.07999 * 120.00134 * 268.74441 * 8 7 6 10 10 C 1.37870 * 119.99657 * 88.74159 * 8 7 6 11 11 N 1.31528 * 120.00027 * 180.29197 * 10 8 7 12 12 Si 1.86801 * 120.00364 * 0.29272 * 10 8 7 13 13 H 1.48505 * 109.46955 * 92.16380 * 12 10 8 14 14 H 1.48501 * 109.47353 * 212.16462 * 12 10 8 15 15 H 1.48495 * 109.46764 * 332.16580 * 12 10 8 16 16 C 1.52997 * 117.49616 * 254.02054 * 7 6 5 17 17 C 1.52993 * 117.50192 * 185.39522 * 7 6 5 18 18 C 1.53001 * 109.46987 * 177.72256 * 3 2 1 19 19 H 1.08999 * 115.55065 * 147.36562 * 18 3 2 20 20 C 1.53004 * 117.50050 * 1.69377 * 18 3 2 21 21 C 1.52996 * 117.49845 * 293.03313 * 18 3 2 22 22 H 1.09001 * 117.49939 * 215.00202 * 21 18 3 23 23 C 1.53000 * 117.50049 * 0.02562 * 21 18 3 24 24 H 1.08995 * 109.46875 * 181.29042 * 1 2 3 25 25 H 1.08995 * 109.47632 * 301.29813 * 1 2 3 26 26 H 1.09002 * 109.47144 * 61.29532 * 1 2 3 27 27 H 1.08994 * 109.47011 * 119.99668 * 2 1 3 28 28 H 1.09003 * 109.47338 * 240.00197 * 2 1 3 29 29 H 1.00900 * 111.00136 * 336.83236 * 5 3 2 30 30 H 1.09004 * 109.47075 * 206.07018 * 6 5 3 31 31 H 1.09003 * 109.47126 * 326.06466 * 6 5 3 32 32 H 0.96999 * 119.99736 * 180.02562 * 11 10 8 33 33 H 1.08994 * 117.50244 * 359.97438 * 16 7 6 34 34 H 1.08999 * 117.50370 * 145.01610 * 16 7 6 35 35 H 1.09001 * 117.49993 * 214.97578 * 17 7 6 36 36 H 1.08996 * 117.49885 * 359.97438 * 17 7 6 37 37 H 1.08997 * 117.49329 * 0.02562 * 20 18 3 38 38 H 1.08995 * 117.49650 * 145.02019 * 20 18 3 39 39 H 1.09006 * 109.47158 * 69.32483 * 23 21 18 40 40 H 1.09002 * 109.47297 * 189.32590 * 23 21 18 41 41 H 1.08997 * 109.47204 * 309.32592 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6437 1.9680 0.8689 5 7 1.5957 2.1190 -1.2259 6 6 0.4304 2.9738 -0.9629 7 6 0.9034 4.3479 -0.4844 8 6 2.1180 4.8980 -1.1866 9 1 3.1044 4.7014 -0.7932 10 6 1.9700 5.6521 -2.3313 11 7 3.0304 6.1273 -2.9474 12 14 0.2634 5.9989 -3.0072 13 1 -0.2381 7.2812 -2.4509 14 1 0.3271 6.0929 -4.4879 15 1 -0.6552 4.8983 -2.6202 16 6 0.7373 4.6744 1.0010 17 6 -0.1656 5.3462 -0.0355 18 6 3.5689 1.4429 0.0573 19 1 4.0587 2.2641 -0.4659 20 6 4.2761 0.0861 0.0617 21 6 4.2279 0.9287 1.3388 22 1 5.1513 1.4116 1.6585 23 6 3.3076 0.4529 2.4646 24 1 -0.3633 -1.0274 0.0231 25 1 -0.3634 0.5338 0.8780 26 1 -0.3633 0.4936 -0.9014 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.3969 1.4512 -1.9557 30 1 -0.1506 3.0878 -1.8781 31 1 -0.1904 2.5149 -0.1933 32 1 2.9262 6.6582 -3.7525 33 1 0.2908 3.9105 1.6374 34 1 1.5067 5.2871 1.4708 35 1 0.0098 6.4008 -0.2477 36 1 -1.2059 5.0241 -0.0814 37 1 3.6520 -0.8067 0.0233 38 1 5.2313 0.0149 -0.4584 39 1 2.8135 -0.4711 2.1640 40 1 3.8965 0.2739 3.3642 41 1 2.5571 1.2168 2.6677 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414157191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:21 Heat of formation + Delta-G solvation = 50.698026 kcal Electronic energy + Delta-G solvation = -18068.552875 eV Core-core repulsion = 15564.100532 eV Total energy + Delta-G solvation = -2504.452343 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.04511 -37.01387 -34.64959 -31.82784 -31.21183 -28.50436 -26.83363 -25.41268 -23.37714 -22.74264 -21.55326 -20.01674 -18.77692 -18.69699 -16.10888 -15.66284 -15.26806 -14.77158 -14.54567 -13.95195 -13.67148 -13.31518 -12.83089 -12.59556 -12.43600 -12.31009 -12.21328 -11.99191 -11.51821 -11.26367 -10.96046 -10.72945 -10.65291 -10.58039 -10.36070 -10.15546 -9.97353 -9.53989 -9.39102 -9.29276 -8.88471 -8.35222 -8.27669 -7.41200 -5.86797 -3.82636 3.40372 3.49486 3.52783 4.13471 4.60519 4.73563 5.04200 5.04507 5.08134 5.20553 5.36643 5.39075 5.43111 5.49998 5.60314 5.82205 5.91557 5.93694 5.97987 6.00481 6.04796 6.06616 6.10567 6.21706 6.27104 6.30782 6.36335 6.43793 6.50956 6.54766 6.58253 6.66674 6.80704 6.93260 7.17136 7.26169 7.85357 8.06872 8.26482 8.78079 9.19275 9.77876 11.26537 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.008243 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.557054 B = 3396.163683 C = 3652.194812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.161 4.161 3 C 0.127 3.873 4 H 0.075 0.925 5 N -0.649 5.649 6 C 0.094 3.906 7 C 0.015 3.985 8 C -0.438 4.438 9 H 0.076 0.924 10 C 0.070 3.930 11 N -0.909 5.909 12 Si 0.879 3.121 13 H -0.286 1.286 14 H -0.300 1.300 15 H -0.262 1.262 16 C -0.186 4.186 17 C -0.209 4.209 18 C -0.115 4.115 19 H 0.119 0.881 20 C -0.191 4.191 21 C -0.163 4.163 22 H 0.098 0.902 23 C -0.123 4.123 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.327 0.673 30 H 0.057 0.943 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 -12.247 7.149 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.200 4.200 3 C 0.016 3.984 4 H 0.093 0.907 5 N -0.277 5.277 6 C -0.035 4.035 7 C 0.014 3.986 8 C -0.476 4.476 9 H 0.094 0.906 10 C -0.129 4.129 11 N -0.548 5.548 12 Si 0.709 3.291 13 H -0.213 1.213 14 H -0.227 1.227 15 H -0.187 1.187 16 C -0.223 4.223 17 C -0.247 4.247 18 C -0.134 4.134 19 H 0.137 0.863 20 C -0.228 4.228 21 C -0.182 4.182 22 H 0.116 0.884 23 C -0.180 4.180 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.145 0.855 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.992 -11.620 7.036 13.910 hybrid contribution -1.588 -0.310 -0.390 1.664 sum -4.580 -11.930 6.646 14.404 Atomic orbital electron populations 1.21862 0.96464 1.00935 1.01917 1.22606 0.95541 0.99316 1.02524 1.20966 0.92510 0.91062 0.93816 0.90661 1.59977 1.37186 1.23620 1.06949 1.21771 0.89657 0.93741 0.98361 1.19537 0.95590 0.91234 0.92286 1.20021 0.91049 1.28499 1.07988 0.90594 1.24896 0.95877 0.95752 0.96398 1.69900 1.28637 1.36781 1.19497 0.86900 0.86304 0.78823 0.77087 1.21264 1.22711 1.18720 1.22842 1.02562 1.03162 0.93744 1.22954 0.94850 0.99415 1.07484 1.22552 0.94912 0.96900 0.98988 0.86265 1.23236 1.02359 0.95869 1.01345 1.22312 1.01281 1.04785 0.89837 0.88429 1.21458 0.98865 1.00716 0.96973 0.93258 0.92921 0.92702 0.90906 0.91719 0.85544 0.92477 0.96599 0.93149 0.91709 0.89861 0.89649 0.91450 0.88963 0.89684 0.92365 0.92948 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.66 37.16 0.32 -1.58 16 2 C -0.16 -2.08 3.75 -26.73 -0.10 -2.18 16 3 C 0.13 2.04 1.85 -67.71 -0.13 1.92 16 4 H 0.08 1.32 6.53 -51.93 -0.34 0.98 16 5 N -0.65 -12.23 5.36 -106.72 -0.57 -12.80 16 6 C 0.09 1.88 4.77 -3.83 -0.02 1.86 16 7 C 0.02 0.34 1.06 -155.67 -0.17 0.18 16 8 C -0.44 -12.07 8.76 -34.44 -0.30 -12.37 16 9 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.91 -28.10 13.96 55.43 0.77 -27.33 16 12 Si 0.88 22.19 24.98 -169.99 -4.25 17.94 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 15 H -0.26 -6.22 5.42 56.52 0.31 -5.91 16 16 C -0.19 -3.83 9.69 -26.73 -0.26 -4.09 16 17 C -0.21 -4.53 7.42 -26.73 -0.20 -4.73 16 18 C -0.11 -1.88 6.00 -90.62 -0.54 -2.43 16 19 H 0.12 2.39 8.14 -51.93 -0.42 1.97 16 20 C -0.19 -2.60 9.25 -26.69 -0.25 -2.84 16 21 C -0.16 -2.27 6.41 -90.58 -0.58 -2.85 16 22 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 23 C -0.12 -1.48 8.85 37.16 0.33 -1.15 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.66 7.95 -51.93 -0.41 0.25 16 26 H 0.05 0.72 6.52 -51.93 -0.34 0.38 16 27 H 0.07 0.87 4.14 -51.93 -0.21 0.65 16 28 H 0.06 0.82 7.43 -51.93 -0.39 0.44 16 29 H 0.33 5.62 7.95 -39.29 -0.31 5.30 16 30 H 0.06 1.19 6.66 -51.93 -0.35 0.84 16 31 H 0.02 0.29 5.99 -51.93 -0.31 -0.02 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 34 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 35 H 0.09 1.97 6.98 -51.93 -0.36 1.60 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 37 H 0.09 1.14 5.74 -51.93 -0.30 0.84 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.64 5.47 -51.93 -0.28 0.36 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.76 7.33 -51.93 -0.38 0.38 16 LS Contribution 306.03 15.07 4.61 4.61 Total: -1.00 -29.45 306.03 -8.44 -37.88 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -7.02 Total: 8.03 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -1.99 Total: -28.34 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.20 Total: -40.12 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.25 Total: 17.94 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.45 -8.44 -37.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414157191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.581 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds