Wall clock time and date at job start Sun Mar 29 2020 22:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46934 * 2 1 4 4 H 1.09005 * 109.47230 * 57.72705 * 3 2 1 5 5 N 1.46897 * 109.47336 * 297.72418 * 3 2 1 6 6 C 1.46895 * 111.00157 * 100.78734 * 5 3 2 7 7 C 1.53000 * 109.47571 * 86.06929 * 6 5 3 8 8 C 1.50699 * 115.54834 * 39.71869 * 7 6 5 9 9 H 1.07999 * 120.00134 * 268.74441 * 8 7 6 10 10 C 1.37870 * 119.99657 * 88.74159 * 8 7 6 11 11 N 1.31528 * 120.00027 * 180.29197 * 10 8 7 12 12 Si 1.86801 * 120.00364 * 0.29272 * 10 8 7 13 13 H 1.48505 * 109.46955 * 92.16380 * 12 10 8 14 14 H 1.48501 * 109.47353 * 212.16462 * 12 10 8 15 15 H 1.48495 * 109.46764 * 332.16580 * 12 10 8 16 16 C 1.52997 * 117.49616 * 254.02054 * 7 6 5 17 17 C 1.52993 * 117.50192 * 185.39522 * 7 6 5 18 18 C 1.53001 * 109.46987 * 177.72256 * 3 2 1 19 19 H 1.08999 * 115.55065 * 147.36562 * 18 3 2 20 20 C 1.53004 * 117.50050 * 1.69377 * 18 3 2 21 21 C 1.52996 * 117.49845 * 293.03313 * 18 3 2 22 22 H 1.09001 * 117.49939 * 215.00202 * 21 18 3 23 23 C 1.53000 * 117.50049 * 0.02562 * 21 18 3 24 24 H 1.08995 * 109.46875 * 181.29042 * 1 2 3 25 25 H 1.08995 * 109.47632 * 301.29813 * 1 2 3 26 26 H 1.09002 * 109.47144 * 61.29532 * 1 2 3 27 27 H 1.08994 * 109.47011 * 119.99668 * 2 1 3 28 28 H 1.09003 * 109.47338 * 240.00197 * 2 1 3 29 29 H 1.00900 * 111.00136 * 336.83236 * 5 3 2 30 30 H 1.09004 * 109.47075 * 206.07018 * 6 5 3 31 31 H 1.09003 * 109.47126 * 326.06466 * 6 5 3 32 32 H 0.96999 * 119.99736 * 180.02562 * 11 10 8 33 33 H 1.08994 * 117.50244 * 359.97438 * 16 7 6 34 34 H 1.08999 * 117.50370 * 145.01610 * 16 7 6 35 35 H 1.09001 * 117.49993 * 214.97578 * 17 7 6 36 36 H 1.08996 * 117.49885 * 359.97438 * 17 7 6 37 37 H 1.08997 * 117.49329 * 0.02562 * 20 18 3 38 38 H 1.08995 * 117.49650 * 145.02019 * 20 18 3 39 39 H 1.09006 * 109.47158 * 69.32483 * 23 21 18 40 40 H 1.09002 * 109.47297 * 189.32590 * 23 21 18 41 41 H 1.08997 * 109.47204 * 309.32592 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6437 1.9680 0.8689 5 7 1.5957 2.1190 -1.2259 6 6 0.4304 2.9738 -0.9629 7 6 0.9034 4.3479 -0.4844 8 6 2.1180 4.8980 -1.1866 9 1 3.1044 4.7014 -0.7932 10 6 1.9700 5.6521 -2.3313 11 7 3.0304 6.1273 -2.9474 12 14 0.2634 5.9989 -3.0072 13 1 -0.2381 7.2812 -2.4509 14 1 0.3271 6.0929 -4.4879 15 1 -0.6552 4.8983 -2.6202 16 6 0.7373 4.6744 1.0010 17 6 -0.1656 5.3462 -0.0355 18 6 3.5689 1.4429 0.0573 19 1 4.0587 2.2641 -0.4659 20 6 4.2761 0.0861 0.0617 21 6 4.2279 0.9287 1.3388 22 1 5.1513 1.4116 1.6585 23 6 3.3076 0.4529 2.4646 24 1 -0.3633 -1.0274 0.0231 25 1 -0.3634 0.5338 0.8780 26 1 -0.3633 0.4936 -0.9014 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.3969 1.4512 -1.9557 30 1 -0.1506 3.0878 -1.8781 31 1 -0.1904 2.5149 -0.1933 32 1 2.9262 6.6582 -3.7525 33 1 0.2908 3.9105 1.6374 34 1 1.5067 5.2871 1.4708 35 1 0.0098 6.4008 -0.2477 36 1 -1.2059 5.0241 -0.0814 37 1 3.6520 -0.8067 0.0233 38 1 5.2313 0.0149 -0.4584 39 1 2.8135 -0.4711 2.1640 40 1 3.8965 0.2739 3.3642 41 1 2.5571 1.2168 2.6677 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414157191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:20 Heat of formation + Delta-G solvation = 32.611777 kcal Electronic energy + Delta-G solvation = -18069.337153 eV Core-core repulsion = 15564.100532 eV Total energy + Delta-G solvation = -2505.236621 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31108 -38.64967 -35.98908 -34.02877 -32.41674 -29.57686 -28.20545 -27.39342 -24.89358 -23.86443 -23.25242 -21.10746 -20.64218 -20.02161 -18.07943 -16.98936 -16.67812 -16.52530 -15.85152 -15.35808 -15.18562 -14.70521 -14.45627 -14.24898 -13.74088 -13.59890 -13.32999 -13.21933 -12.98478 -12.84067 -12.47987 -12.21226 -12.09041 -11.97622 -11.81618 -11.67522 -11.45701 -11.32921 -10.83331 -10.66556 -10.49759 -10.44732 -10.08970 -8.83043 -8.10901 -6.09944 1.39354 1.41460 1.53561 2.48260 2.94360 3.21218 3.25403 3.54281 3.94941 3.96948 4.09778 4.25108 4.27120 4.33270 4.36628 4.46765 4.50084 4.59478 4.68810 4.77527 4.86025 4.88043 4.90735 4.94766 5.01093 5.03694 5.10364 5.15057 5.23852 5.24968 5.34000 5.40129 5.47398 5.51877 5.56640 5.58837 5.87139 6.45567 6.62724 6.89182 6.95848 7.53708 9.06531 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.008243 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.557054 B = 3396.163683 C = 3652.194812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.135 3.865 4 H 0.062 0.938 5 N -0.676 5.676 6 C 0.105 3.895 7 C -0.012 4.012 8 C -0.423 4.423 9 H 0.022 0.978 10 C 0.008 3.992 11 N -0.964 5.964 12 Si 0.940 3.060 13 H -0.282 1.282 14 H -0.307 1.307 15 H -0.231 1.231 16 C -0.170 4.170 17 C -0.204 4.204 18 C -0.146 4.146 19 H 0.065 0.935 20 C -0.171 4.171 21 C -0.157 4.157 22 H 0.092 0.908 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.335 0.665 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.257 0.743 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 -14.672 8.552 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.189 4.189 3 C 0.025 3.975 4 H 0.080 0.920 5 N -0.306 5.306 6 C -0.025 4.025 7 C -0.014 4.014 8 C -0.461 4.461 9 H 0.041 0.959 10 C -0.186 4.186 11 N -0.606 5.606 12 Si 0.767 3.233 13 H -0.208 1.208 14 H -0.235 1.235 15 H -0.154 1.154 16 C -0.207 4.207 17 C -0.242 4.242 18 C -0.166 4.166 19 H 0.084 0.916 20 C -0.207 4.207 21 C -0.175 4.175 22 H 0.110 0.890 23 C -0.176 4.176 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.154 0.846 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.646 -14.069 8.468 17.364 hybrid contribution -0.595 0.455 -0.753 1.062 sum -6.240 -13.613 7.714 16.846 Atomic orbital electron populations 1.21843 0.95502 1.02238 1.01408 1.22492 0.96274 0.96714 1.03463 1.20870 0.91753 0.92909 0.91919 0.92033 1.59868 1.37212 1.24793 1.08734 1.21581 0.90073 0.92147 0.98683 1.19536 0.94726 0.93252 0.93844 1.20098 0.90981 1.27387 1.07644 0.95925 1.25719 0.99798 0.96071 0.97035 1.70079 1.31320 1.38807 1.20444 0.85901 0.82018 0.79647 0.75708 1.20813 1.23541 1.15370 1.22837 1.01803 1.03195 0.92838 1.22990 0.96157 0.98059 1.06973 1.22347 0.95545 0.97244 1.01436 0.91642 1.23297 1.02055 0.94928 1.00451 1.22431 1.01059 1.03942 0.90099 0.89019 1.21461 0.98462 1.01011 0.96654 0.91132 0.92934 0.93621 0.89264 0.91319 0.84621 0.93087 0.93777 0.93474 0.88291 0.91415 0.91437 0.88208 0.86687 0.89704 0.90723 0.91241 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.66 71.98 0.62 -2.53 16 2 C -0.15 -3.43 3.75 30.59 0.11 -3.31 16 3 C 0.14 4.22 1.85 44.92 0.08 4.30 16 4 H 0.06 2.06 6.53 -2.38 -0.02 2.05 16 5 N -0.68 -25.23 5.36 -491.57 -2.64 -27.86 16 6 C 0.10 3.98 4.77 86.30 0.41 4.39 16 7 C -0.01 -0.54 1.06 -52.93 -0.06 -0.60 16 8 C -0.42 -24.23 8.76 25.60 0.22 -24.00 16 9 H 0.02 1.50 8.06 -2.91 -0.02 1.47 16 10 C 0.01 0.46 5.47 84.65 0.46 0.93 16 11 N -0.96 -62.64 13.96 21.45 0.30 -62.34 16 12 Si 0.94 46.04 24.98 68.60 1.71 47.75 16 13 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 14 H -0.31 -15.35 7.11 99.48 0.71 -14.65 16 15 H -0.23 -10.03 5.42 99.48 0.54 -9.49 16 16 C -0.17 -6.69 9.69 30.59 0.30 -6.39 16 17 C -0.20 -8.32 7.42 30.59 0.23 -8.09 16 18 C -0.15 -4.92 6.00 -10.79 -0.06 -4.98 16 19 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 20 C -0.17 -4.42 9.25 30.62 0.28 -4.13 16 21 C -0.16 -4.23 6.41 -10.77 -0.07 -4.30 16 22 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 23 C -0.12 -2.54 8.85 71.98 0.64 -1.90 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.09 7.95 -2.39 -0.02 1.07 16 26 H 0.04 1.03 6.52 -2.39 -0.02 1.02 16 27 H 0.09 1.75 4.14 -2.39 -0.01 1.74 16 28 H 0.07 1.53 7.43 -2.39 -0.02 1.51 16 29 H 0.34 11.25 7.95 -89.69 -0.71 10.54 16 30 H 0.05 1.98 6.66 -2.38 -0.02 1.96 16 31 H 0.04 1.43 5.99 -2.39 -0.01 1.42 16 32 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.10 3.25 8.08 -2.39 -0.02 3.23 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.07 3.00 6.98 -2.39 -0.02 2.98 16 36 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 37 H 0.12 2.46 5.74 -2.39 -0.01 2.45 16 38 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.07 1.34 5.47 -2.38 -0.01 1.33 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.21 7.33 -2.39 -0.02 1.19 16 Total: -1.00 -67.45 306.03 2.67 -64.78 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.12 Total: 28.30 kcal Atomic # 6 Polarization: -53.80 SS G_CDS: 3.17 Total: -50.63 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -2.34 Total: -90.20 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.71 Total: 47.75 kcal Total: -67.45 2.67 -64.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414157191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.387 kcal (2) G-P(sol) polarization free energy of solvation -67.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds