Wall clock time and date at job start Sun Mar 29 2020 22:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46970 * 2 1 4 4 H 1.08996 * 109.46842 * 55.19818 * 3 2 1 5 5 N 1.46900 * 109.46863 * 295.19962 * 3 2 1 6 6 C 1.46907 * 110.99833 * 111.24731 * 5 3 2 7 7 C 1.53004 * 109.46796 * 86.80672 * 6 5 3 8 8 C 1.50699 * 115.54818 * 295.91630 * 7 6 5 9 9 H 1.08003 * 120.00201 * 94.49797 * 8 7 6 10 10 C 1.37879 * 119.99961 * 274.50257 * 8 7 6 11 11 N 1.31510 * 120.00062 * 5.03568 * 10 8 7 12 12 Si 1.86806 * 120.00027 * 185.03777 * 10 8 7 13 13 H 1.48503 * 109.46893 * 89.99528 * 12 10 8 14 14 H 1.48496 * 109.46866 * 330.00032 * 12 10 8 15 15 H 1.48498 * 109.46788 * 209.99697 * 12 10 8 16 16 C 1.52999 * 117.49864 * 81.58719 * 7 6 5 17 17 C 1.52995 * 117.50061 * 150.24638 * 7 6 5 18 18 C 1.52993 * 109.46992 * 175.20000 * 3 2 1 19 19 H 1.09005 * 115.54832 * 154.27783 * 18 3 2 20 20 C 1.52996 * 117.50350 * 8.61086 * 18 3 2 21 21 C 1.52995 * 60.00075 * 252.50780 * 20 18 3 22 22 H 1.08999 * 117.50425 * 107.48496 * 21 20 18 23 23 C 1.53000 * 117.49713 * 252.51002 * 21 20 18 24 24 H 1.08997 * 109.47523 * 305.54445 * 1 2 3 25 25 H 1.09003 * 109.47231 * 65.54534 * 1 2 3 26 26 H 1.09004 * 109.46914 * 185.54205 * 1 2 3 27 27 H 1.08992 * 109.47377 * 239.99764 * 2 1 3 28 28 H 1.09003 * 109.46885 * 119.99450 * 2 1 3 29 29 H 1.00903 * 111.00149 * 347.29910 * 5 3 2 30 30 H 1.08997 * 109.47359 * 326.80672 * 6 5 3 31 31 H 1.09004 * 109.46949 * 206.80276 * 6 5 3 32 32 H 0.97006 * 119.99728 * 4.55049 * 11 10 8 33 33 H 1.09001 * 117.49509 * 215.00151 * 16 7 6 34 34 H 1.08998 * 117.50161 * 0.02562 * 16 7 6 35 35 H 1.09012 * 117.49822 * 359.97438 * 17 7 6 36 36 H 1.08994 * 117.50161 * 144.99535 * 17 7 6 37 37 H 1.09000 * 117.49578 * 359.97438 * 20 18 3 38 38 H 1.08998 * 117.50708 * 145.01695 * 20 18 3 39 39 H 1.09006 * 109.47022 * 128.61726 * 23 21 20 40 40 H 1.09000 * 109.47006 * 248.61422 * 23 21 20 41 41 H 1.09002 * 109.47311 * 8.61869 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6081 1.9806 0.8438 5 7 1.6472 2.1007 -1.2532 6 6 0.6386 3.1404 -1.0081 7 6 1.3371 4.4569 -0.6619 8 6 2.1409 4.4506 0.6128 9 1 3.2006 4.2440 0.5821 10 6 1.5235 4.7084 1.8184 11 7 0.2183 4.8617 1.8692 12 14 2.5409 4.8398 3.3796 13 1 2.9637 6.2496 3.5776 14 1 3.7421 3.9747 3.2618 15 1 1.7256 4.3998 4.5401 16 6 1.8599 5.3058 -1.8225 17 6 0.6235 5.7562 -1.0406 18 6 3.5652 1.4443 0.1207 19 1 4.0684 2.3186 -0.2923 20 6 4.2841 0.0982 0.0114 21 6 4.1760 0.7998 1.3667 22 1 3.4913 0.3747 2.1004 23 6 5.4467 1.4320 1.9381 24 1 -0.3634 0.5974 0.8361 25 1 -0.3634 0.4254 -0.9355 26 1 -0.3633 -1.0229 0.0993 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3155 1.4269 -1.9270 30 1 0.0000 2.8387 -0.1780 31 1 0.0314 3.2757 -1.9032 32 1 -0.3171 4.7284 1.0714 33 1 2.7852 5.8597 -1.6640 34 1 1.7059 4.9266 -2.8327 35 1 -0.3435 5.6731 -1.5368 36 1 0.7353 6.6064 -0.3678 37 1 3.6703 -0.7888 -0.1461 38 1 5.2604 0.0867 -0.4731 39 1 5.2439 2.4657 2.2184 40 1 5.7667 0.8732 2.8176 41 1 6.2348 1.4076 1.1855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414157192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:23 Heat of formation + Delta-G solvation = 31.462249 kcal Electronic energy + Delta-G solvation = -18229.606153 eV Core-core repulsion = 15724.319685 eV Total energy + Delta-G solvation = -2505.286469 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.65974 -36.82441 -34.65550 -31.77335 -31.17329 -28.47465 -26.02882 -25.01519 -23.29393 -22.37368 -21.06770 -20.21309 -19.09993 -18.70121 -16.38307 -15.30259 -15.14819 -14.56753 -13.99098 -13.72192 -13.48638 -12.97218 -12.77213 -12.64153 -12.45517 -11.99281 -11.81701 -11.74123 -11.48466 -10.96224 -10.86735 -10.69241 -10.54846 -10.41238 -10.30844 -10.24469 -10.05238 -9.50015 -9.28020 -9.02747 -8.37080 -8.31111 -8.11441 -7.48439 -6.21142 -3.91472 3.47021 3.48978 3.64649 4.32803 4.58447 4.81844 5.21860 5.27766 5.37908 5.44919 5.46634 5.51100 5.60264 5.65090 5.80263 5.98531 6.05565 6.10961 6.16689 6.20201 6.26057 6.28846 6.30708 6.38888 6.45864 6.47883 6.60313 6.67674 6.70395 6.77109 6.80842 6.88771 7.02248 7.07681 7.41230 7.45212 7.97998 8.31899 8.47259 8.59827 9.02438 9.78845 11.16734 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.012027 C = 0.009065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.363033 B = 2327.604325 C = 3087.992959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.147 4.147 3 C 0.126 3.874 4 H 0.095 0.905 5 N -0.667 5.667 6 C 0.098 3.902 7 C 0.037 3.963 8 C -0.544 4.544 9 H 0.053 0.947 10 C 0.024 3.976 11 N -0.915 5.915 12 Si 1.054 2.946 13 H -0.291 1.291 14 H -0.283 1.283 15 H -0.288 1.288 16 C -0.187 4.187 17 C -0.189 4.189 18 C -0.097 4.097 19 H 0.110 0.890 20 C -0.197 4.197 21 C -0.160 4.160 22 H 0.095 0.905 23 C -0.120 4.120 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.320 0.680 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.273 0.727 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.689 -8.736 -2.961 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.186 4.186 3 C 0.016 3.984 4 H 0.113 0.887 5 N -0.296 5.296 6 C -0.031 4.031 7 C 0.036 3.964 8 C -0.583 4.583 9 H 0.072 0.928 10 C -0.180 4.180 11 N -0.551 5.551 12 Si 0.884 3.116 13 H -0.218 1.218 14 H -0.209 1.209 15 H -0.214 1.214 16 C -0.224 4.224 17 C -0.227 4.227 18 C -0.115 4.115 19 H 0.128 0.872 20 C -0.234 4.234 21 C -0.179 4.179 22 H 0.113 0.887 23 C -0.177 4.177 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.110 -7.967 -1.322 9.062 hybrid contribution -0.705 -0.799 -1.509 1.847 sum 3.405 -8.766 -2.830 9.821 Atomic orbital electron populations 1.21814 0.96355 1.00882 1.01999 1.22282 0.95551 0.99157 1.01599 1.21126 0.92646 0.90923 0.93734 0.88704 1.60098 1.43783 1.15036 1.10638 1.21660 0.91336 0.93193 0.96920 1.19054 0.97041 0.86312 0.93956 1.21231 0.95360 1.51464 0.90215 0.92847 1.25580 0.97248 0.94102 1.01099 1.70696 1.05183 1.46033 1.33164 0.83767 0.75236 0.76628 0.75974 1.21810 1.20891 1.21427 1.22717 0.97059 1.07006 0.95626 1.22788 0.93910 1.02159 1.03891 1.22363 0.95069 0.95070 0.99042 0.87200 1.23273 1.01889 0.97641 1.00591 1.22276 0.99888 1.04561 0.91141 0.88701 1.21341 0.95518 1.01010 0.99865 0.92383 0.93166 0.93349 0.92073 0.91922 0.86303 0.94620 0.94944 0.91610 0.90801 0.91864 0.92165 0.90125 0.89282 0.90016 0.91792 0.93110 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.33 37.16 0.35 -1.90 16 2 C -0.15 -2.23 3.81 -26.73 -0.10 -2.33 16 3 C 0.13 2.32 1.67 -67.71 -0.11 2.21 16 4 H 0.10 2.16 6.23 -51.93 -0.32 1.84 16 5 N -0.67 -12.61 6.07 -106.72 -0.65 -13.26 16 6 C 0.10 2.09 5.52 -3.82 -0.02 2.07 16 7 C 0.04 0.90 1.13 -155.66 -0.18 0.72 16 8 C -0.54 -14.31 6.71 -34.44 -0.23 -14.54 16 9 H 0.05 1.46 7.26 -52.48 -0.38 1.07 16 10 C 0.02 0.65 5.39 -17.82 -0.10 0.56 16 11 N -0.91 -26.39 13.47 55.43 0.75 -25.64 16 12 Si 1.05 24.80 29.91 -169.99 -5.08 19.72 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.26 7.00 56.52 0.40 -5.86 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.19 -4.18 9.96 -26.70 -0.27 -4.45 16 17 C -0.19 -4.44 8.73 -26.70 -0.23 -4.68 16 18 C -0.10 -1.74 5.46 -90.63 -0.49 -2.23 16 19 H 0.11 2.27 7.73 -51.93 -0.40 1.87 16 20 C -0.20 -2.94 9.21 -26.74 -0.25 -3.18 16 21 C -0.16 -2.61 5.75 -90.62 -0.52 -3.13 16 22 H 0.09 1.54 7.59 -51.93 -0.39 1.15 16 23 C -0.12 -1.85 10.19 37.16 0.38 -1.47 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.73 7.41 -51.93 -0.39 0.34 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.85 7.25 -51.93 -0.38 0.48 16 28 H 0.06 0.92 6.73 -51.93 -0.35 0.57 16 29 H 0.32 5.33 7.58 -39.29 -0.30 5.03 16 30 H 0.04 0.83 6.95 -51.93 -0.36 0.46 16 31 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 32 H 0.27 7.83 6.26 -40.82 -0.26 7.58 16 33 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 36 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 37 H 0.09 1.22 5.88 -51.93 -0.31 0.92 16 38 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 39 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.71 7.90 -51.93 -0.41 0.30 16 LS Contribution 319.46 15.07 4.81 4.81 Total: -1.00 -27.32 319.46 -9.20 -36.53 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -7.26 Total: 10.19 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: -1.77 Total: -32.35 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.10 Total: -38.90 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.32 -9.20 -36.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414157192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.989 kcal (2) G-P(sol) polarization free energy of solvation -27.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds