Wall clock time and date at job start Sun Mar 29 2020 22:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46970 * 2 1 4 4 H 1.08996 * 109.46842 * 55.19818 * 3 2 1 5 5 N 1.46900 * 109.46863 * 295.19962 * 3 2 1 6 6 C 1.46907 * 110.99833 * 111.24731 * 5 3 2 7 7 C 1.53004 * 109.46796 * 86.80672 * 6 5 3 8 8 C 1.50699 * 115.54818 * 295.91630 * 7 6 5 9 9 H 1.08003 * 120.00201 * 94.49797 * 8 7 6 10 10 C 1.37879 * 119.99961 * 274.50257 * 8 7 6 11 11 N 1.31510 * 120.00062 * 5.03568 * 10 8 7 12 12 Si 1.86806 * 120.00027 * 185.03777 * 10 8 7 13 13 H 1.48503 * 109.46893 * 89.99528 * 12 10 8 14 14 H 1.48496 * 109.46866 * 330.00032 * 12 10 8 15 15 H 1.48498 * 109.46788 * 209.99697 * 12 10 8 16 16 C 1.52999 * 117.49864 * 81.58719 * 7 6 5 17 17 C 1.52995 * 117.50061 * 150.24638 * 7 6 5 18 18 C 1.52993 * 109.46992 * 175.20000 * 3 2 1 19 19 H 1.09005 * 115.54832 * 154.27783 * 18 3 2 20 20 C 1.52996 * 117.50350 * 8.61086 * 18 3 2 21 21 C 1.52995 * 60.00075 * 252.50780 * 20 18 3 22 22 H 1.08999 * 117.50425 * 107.48496 * 21 20 18 23 23 C 1.53000 * 117.49713 * 252.51002 * 21 20 18 24 24 H 1.08997 * 109.47523 * 305.54445 * 1 2 3 25 25 H 1.09003 * 109.47231 * 65.54534 * 1 2 3 26 26 H 1.09004 * 109.46914 * 185.54205 * 1 2 3 27 27 H 1.08992 * 109.47377 * 239.99764 * 2 1 3 28 28 H 1.09003 * 109.46885 * 119.99450 * 2 1 3 29 29 H 1.00903 * 111.00149 * 347.29910 * 5 3 2 30 30 H 1.08997 * 109.47359 * 326.80672 * 6 5 3 31 31 H 1.09004 * 109.46949 * 206.80276 * 6 5 3 32 32 H 0.97006 * 119.99728 * 4.55049 * 11 10 8 33 33 H 1.09001 * 117.49509 * 215.00151 * 16 7 6 34 34 H 1.08998 * 117.50161 * 0.02562 * 16 7 6 35 35 H 1.09012 * 117.49822 * 359.97438 * 17 7 6 36 36 H 1.08994 * 117.50161 * 144.99535 * 17 7 6 37 37 H 1.09000 * 117.49578 * 359.97438 * 20 18 3 38 38 H 1.08998 * 117.50708 * 145.01695 * 20 18 3 39 39 H 1.09006 * 109.47022 * 128.61726 * 23 21 20 40 40 H 1.09000 * 109.47006 * 248.61422 * 23 21 20 41 41 H 1.09002 * 109.47311 * 8.61869 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6081 1.9806 0.8438 5 7 1.6472 2.1007 -1.2532 6 6 0.6386 3.1404 -1.0081 7 6 1.3371 4.4569 -0.6619 8 6 2.1409 4.4506 0.6128 9 1 3.2006 4.2440 0.5821 10 6 1.5235 4.7084 1.8184 11 7 0.2183 4.8617 1.8692 12 14 2.5409 4.8398 3.3796 13 1 2.9637 6.2496 3.5776 14 1 3.7421 3.9747 3.2618 15 1 1.7256 4.3998 4.5401 16 6 1.8599 5.3058 -1.8225 17 6 0.6235 5.7562 -1.0406 18 6 3.5652 1.4443 0.1207 19 1 4.0684 2.3186 -0.2923 20 6 4.2841 0.0982 0.0114 21 6 4.1760 0.7998 1.3667 22 1 3.4913 0.3747 2.1004 23 6 5.4467 1.4320 1.9381 24 1 -0.3634 0.5974 0.8361 25 1 -0.3634 0.4254 -0.9355 26 1 -0.3633 -1.0229 0.0993 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3155 1.4269 -1.9270 30 1 0.0000 2.8387 -0.1780 31 1 0.0314 3.2757 -1.9032 32 1 -0.3171 4.7284 1.0714 33 1 2.7852 5.8597 -1.6640 34 1 1.7059 4.9266 -2.8327 35 1 -0.3435 5.6731 -1.5368 36 1 0.7353 6.6064 -0.3678 37 1 3.6703 -0.7888 -0.1461 38 1 5.2604 0.0867 -0.4731 39 1 5.2439 2.4657 2.2184 40 1 5.7667 0.8732 2.8176 41 1 6.2348 1.4076 1.1855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414157192.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:36:22 Heat of formation + Delta-G solvation = 17.156534 kcal Electronic energy + Delta-G solvation = -18230.226496 eV Core-core repulsion = 15724.319685 eV Total energy + Delta-G solvation = -2505.906811 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.10218 -38.56240 -36.11922 -33.84738 -32.58876 -29.75879 -27.50388 -27.04887 -24.92072 -23.64972 -22.94107 -21.54834 -20.96935 -20.14134 -18.36630 -16.73736 -16.53058 -16.05548 -15.74604 -15.62466 -14.89735 -14.53155 -14.38660 -14.14043 -13.83311 -13.72406 -13.39930 -13.10801 -12.85174 -12.73404 -12.49803 -12.18082 -12.15566 -11.93495 -11.87522 -11.73993 -11.70707 -11.32061 -10.67243 -10.45571 -10.30669 -10.28172 -10.06070 -9.05426 -8.37904 -6.06476 1.51871 1.58204 1.75294 2.61714 2.98264 3.27632 3.35914 3.63995 3.95790 4.02869 4.18597 4.20121 4.24548 4.30691 4.38066 4.49558 4.53253 4.61307 4.79353 4.83691 4.85545 4.91560 4.92701 4.98022 4.98357 5.02559 5.07667 5.12374 5.19018 5.23298 5.37669 5.40012 5.47243 5.53019 5.59694 5.64836 6.34547 6.39261 6.44772 6.85774 6.94723 7.68024 9.01103 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.012027 C = 0.009065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.363033 B = 2327.604325 C = 3087.992959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C 0.132 3.868 4 H 0.045 0.955 5 N -0.666 5.666 6 C 0.112 3.888 7 C 0.014 3.986 8 C -0.534 4.534 9 H 0.037 0.963 10 C -0.017 4.017 11 N -0.943 5.943 12 Si 1.087 2.913 13 H -0.286 1.286 14 H -0.266 1.266 15 H -0.291 1.291 16 C -0.169 4.169 17 C -0.192 4.192 18 C -0.123 4.123 19 H 0.077 0.923 20 C -0.162 4.162 21 C -0.167 4.167 22 H 0.094 0.906 23 C -0.119 4.119 24 H 0.029 0.971 25 H 0.050 0.950 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.336 0.664 30 H 0.010 0.990 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 -10.790 -3.948 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.022 3.978 4 H 0.063 0.937 5 N -0.296 5.296 6 C -0.017 4.017 7 C 0.013 3.987 8 C -0.573 4.573 9 H 0.055 0.945 10 C -0.216 4.216 11 N -0.580 5.580 12 Si 0.912 3.088 13 H -0.212 1.212 14 H -0.191 1.191 15 H -0.217 1.217 16 C -0.206 4.206 17 C -0.230 4.230 18 C -0.142 4.142 19 H 0.095 0.905 20 C -0.199 4.199 21 C -0.186 4.186 22 H 0.112 0.888 23 C -0.176 4.176 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.155 0.845 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.079 -10.029 -2.328 11.480 hybrid contribution -0.965 -0.146 -1.245 1.582 sum 4.115 -10.175 -3.573 11.543 Atomic orbital electron populations 1.21778 0.96117 1.01952 1.00826 1.22190 0.95670 0.96766 1.02992 1.20918 0.92888 0.92421 0.91540 0.93723 1.60034 1.42848 1.15350 1.11383 1.21372 0.91255 0.92539 0.96556 1.19218 0.97797 0.87785 0.93909 1.21310 0.94662 1.49886 0.91408 0.94450 1.26539 0.97396 0.93956 1.03723 1.70792 1.05929 1.48540 1.32788 0.83340 0.74847 0.77140 0.73435 1.21208 1.19057 1.21711 1.22705 0.96076 1.05602 0.96244 1.22697 0.95300 1.00992 1.03987 1.22152 0.94642 0.95998 1.01387 0.90480 1.23312 1.02044 0.96059 0.98465 1.22388 1.00054 1.04661 0.91483 0.88779 1.21336 0.95537 0.99586 1.01163 0.95213 0.93110 0.90705 0.89751 0.91160 0.84497 0.97180 0.93261 0.92613 0.91551 0.89388 0.90429 0.92785 0.87315 0.88622 0.94462 0.90988 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 9.33 71.98 0.67 -3.49 16 2 C -0.14 -3.86 3.81 30.60 0.12 -3.74 16 3 C 0.13 4.84 1.67 44.92 0.08 4.92 16 4 H 0.04 2.10 6.23 -2.39 -0.01 2.08 16 5 N -0.67 -24.60 6.07 -491.55 -2.98 -27.58 16 6 C 0.11 4.79 5.52 86.30 0.48 5.27 16 7 C 0.01 0.67 1.13 -52.93 -0.06 0.61 16 8 C -0.53 -28.80 6.71 25.60 0.17 -28.63 16 9 H 0.04 2.10 7.26 -2.91 -0.02 2.08 16 10 C -0.02 -0.96 5.39 84.66 0.46 -0.50 16 11 N -0.94 -56.07 13.47 21.45 0.29 -55.78 16 12 Si 1.09 51.08 29.91 68.60 2.05 53.13 16 13 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 14 H -0.27 -11.59 7.00 99.48 0.70 -10.90 16 15 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 16 C -0.17 -7.44 9.96 30.62 0.30 -7.14 16 17 C -0.19 -9.04 8.73 30.62 0.27 -8.77 16 18 C -0.12 -4.33 5.46 -10.80 -0.06 -4.39 16 19 H 0.08 3.22 7.73 -2.38 -0.02 3.21 16 20 C -0.16 -4.33 9.21 30.59 0.28 -4.05 16 21 C -0.17 -5.20 5.75 -10.80 -0.06 -5.27 16 22 H 0.09 2.93 7.59 -2.39 -0.02 2.91 16 23 C -0.12 -3.49 10.19 71.98 0.73 -2.76 16 24 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 1.38 7.41 -2.39 -0.02 1.37 16 26 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.08 2.01 7.25 -2.39 -0.02 1.99 16 28 H 0.07 1.88 6.73 -2.39 -0.02 1.86 16 29 H 0.34 10.46 7.58 -89.69 -0.68 9.78 16 30 H 0.01 0.48 6.95 -2.39 -0.02 0.46 16 31 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 32 H 0.26 15.69 6.26 -92.70 -0.58 15.11 16 33 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 36 H 0.05 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.11 2.50 5.88 -2.39 -0.01 2.49 16 38 H 0.10 2.33 8.05 -2.39 -0.02 2.31 16 39 H 0.04 1.27 8.03 -2.38 -0.02 1.25 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 41 H 0.06 1.65 7.90 -2.39 -0.02 1.63 16 Total: -1.00 -60.38 319.46 3.21 -57.17 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.48 Total: 31.00 kcal Atomic # 6 Polarization: -61.32 SS G_CDS: 3.38 Total: -57.94 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.70 Total: -83.36 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.05 Total: 53.13 kcal Total: -60.38 3.21 -57.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414157192.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.325 kcal (2) G-P(sol) polarization free energy of solvation -60.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds