Wall clock time and date at job start Sun Mar 29 2020 22:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50699 * 109.46866 * 120.00044 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99776 * 8 6 4 11 11 H 1.48494 * 109.47197 * 239.99736 * 8 6 4 12 12 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 13 13 N 1.46905 * 109.46913 * 60.00285 * 12 2 1 14 14 C 1.46898 * 110.99716 * 180.02562 * 13 12 2 15 15 H 1.09000 * 112.88568 * 336.34146 * 14 13 12 16 16 C 1.53944 * 113.66481 * 107.81524 * 14 13 12 17 17 C 1.53948 * 87.29865 * 89.73790 * 16 14 13 18 18 C 1.52907 * 113.65951 * 205.00331 * 14 13 12 19 19 C 1.52909 * 121.13994 * 144.71227 * 18 14 13 20 20 C 1.53954 * 86.78268 * 209.37509 * 19 18 14 21 21 C 1.52909 * 121.14088 * 36.14143 * 18 14 13 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 26 26 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 28 28 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.47153 * 180.02562 * 12 2 1 30 30 H 1.08996 * 109.46952 * 300.00302 * 12 2 1 31 31 H 1.00895 * 110.99723 * 56.04924 * 13 12 2 32 32 H 1.09002 * 113.58170 * 204.34310 * 16 14 13 33 33 H 1.08999 * 113.57960 * 335.12733 * 16 14 13 34 34 H 1.09001 * 113.66071 * 270.26121 * 17 16 14 35 35 H 1.08997 * 113.74974 * 139.22077 * 17 16 14 36 36 H 1.09002 * 113.65955 * 323.84239 * 19 18 14 37 37 H 1.08994 * 113.67045 * 94.90138 * 19 18 14 38 38 H 1.09002 * 113.57707 * 270.12364 * 20 19 18 39 39 H 1.09005 * 113.58087 * 139.33334 * 20 19 18 40 40 H 1.08996 * 113.66434 * 265.08985 * 21 18 14 41 41 H 1.08996 * 113.66111 * 36.14884 * 21 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1473 -2.2864 3.6038 10 1 3.1471 -0.1858 4.8162 11 1 1.1677 -1.5866 4.8165 12 6 2.0401 -0.7213 -1.2492 13 7 1.5504 -0.0287 -2.4487 14 6 2.0209 -0.6952 -3.6703 15 1 2.9273 -1.2797 -3.5120 16 6 0.9154 -1.4572 -4.4234 17 6 0.6445 -0.1536 -5.1962 18 6 2.0917 0.2299 -4.8856 19 6 3.1933 0.0743 -5.9347 20 6 3.0574 1.5888 -6.1760 21 6 2.5081 1.6942 -4.7416 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 0.7094 1.1618 3.4844 29 1 3.1301 -0.7217 -1.2490 30 1 1.6767 -1.7489 -1.2492 31 1 1.8199 0.9435 -2.4401 32 1 1.2923 -2.2654 -5.0502 33 1 0.0872 -1.7665 -3.7859 34 1 -0.0916 0.4931 -4.7186 35 1 0.4501 -0.3051 -6.2580 36 1 4.1570 -0.2174 -5.5172 37 1 2.8996 -0.5331 -6.7907 38 1 2.3262 1.8442 -6.9429 39 1 4.0124 2.0955 -6.3155 40 1 1.6671 2.3807 -4.6447 41 1 3.2792 1.8577 -3.9888 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414175793.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:19 Heat of formation + Delta-G solvation = 17.433400 kcal Electronic energy + Delta-G solvation = -17727.601654 eV Core-core repulsion = 15221.706849 eV Total energy + Delta-G solvation = -2505.894805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.43908 -38.34003 -36.02261 -34.12634 -31.93109 -27.54016 -27.27978 -26.74199 -26.35614 -25.27555 -24.49893 -21.45455 -20.31686 -18.74086 -17.81425 -17.13894 -16.54987 -16.33019 -16.13938 -15.50348 -14.99218 -14.54954 -14.09535 -13.91856 -13.49883 -13.22633 -13.14756 -12.98794 -12.91794 -12.57669 -12.56054 -12.46927 -12.21676 -12.09329 -11.82039 -11.80515 -11.34127 -11.25591 -11.06596 -10.73977 -10.62694 -10.45648 -10.35527 -9.11592 -7.97529 -6.14531 1.40445 1.43556 1.53183 2.45760 3.21158 3.24422 3.53082 3.72836 3.92389 3.94762 4.03194 4.13179 4.50060 4.57084 4.61437 4.66662 4.74632 4.84370 4.86319 4.87821 5.00353 5.03231 5.10136 5.11776 5.14422 5.20773 5.23412 5.28021 5.41368 5.45210 5.50717 5.54294 5.68927 5.71848 5.76223 6.18161 6.28997 6.36359 6.50338 6.67653 6.94795 7.53052 9.00940 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.043380 B = 0.005509 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.301911 B = 5081.721845 C = 5176.840411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.059 3.941 3 C -0.119 4.119 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.903 5.903 8 Si 0.945 3.055 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.094 3.906 13 N -0.665 5.665 14 C 0.060 3.940 15 H 0.039 0.961 16 C -0.130 4.130 17 C -0.095 4.095 18 C -0.107 4.107 19 C -0.110 4.110 20 C -0.126 4.126 21 C -0.138 4.138 22 H 0.033 0.967 23 H 0.009 0.991 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.015 0.985 27 H 0.032 0.968 28 H 0.258 0.742 29 H 0.004 0.996 30 H 0.044 0.956 31 H 0.339 0.661 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.528 0.198 -16.585 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.059 3.941 3 C -0.177 4.177 4 C -0.565 4.565 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.208 1.208 12 C -0.035 4.035 13 N -0.297 5.297 14 C -0.050 4.050 15 H 0.057 0.943 16 C -0.168 4.168 17 C -0.132 4.132 18 C -0.108 4.108 19 C -0.148 4.148 20 C -0.163 4.163 21 C -0.175 4.175 22 H 0.052 0.948 23 H 0.028 0.972 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.160 0.840 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.846 -0.011 -16.433 16.537 hybrid contribution 1.199 -0.264 1.438 1.891 sum 3.045 -0.274 -14.995 15.304 Atomic orbital electron populations 1.21456 0.97667 0.97708 0.99354 1.18151 0.92953 0.92368 0.90660 1.21649 0.97317 0.98802 0.99954 1.21444 1.31154 1.11880 0.91990 0.93913 1.25538 0.95291 0.95668 1.01168 1.69968 1.37417 1.23624 1.23262 0.85705 0.78091 0.78732 0.80250 1.19765 1.20749 1.20827 1.21830 0.94578 0.97068 0.90067 1.60352 1.62894 1.06109 1.00336 1.22603 0.96049 0.96807 0.89581 0.94255 1.22949 0.98528 0.96999 0.98312 1.22413 0.94111 0.96580 1.00090 1.22828 0.96915 0.95228 0.95806 1.22625 0.97159 0.97418 0.97597 1.22758 1.01569 0.95866 0.96118 1.22725 1.00702 0.95995 0.98098 0.94779 0.97169 0.93245 0.92426 0.96539 0.94944 0.93275 0.97778 0.93735 0.83992 0.89167 0.92617 0.90702 0.90148 0.90319 0.90052 0.89156 0.90821 0.91445 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.19 8.09 71.98 0.58 -4.61 16 2 C 0.06 2.93 0.57 -52.93 -0.03 2.90 16 3 C -0.12 -5.73 7.92 71.98 0.57 -5.16 16 4 C -0.53 -29.00 8.01 25.60 0.21 -28.79 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.02 1.23 5.15 84.66 0.44 1.66 16 7 N -0.90 -50.99 9.35 21.45 0.20 -50.79 16 8 Si 0.95 43.88 29.54 68.60 2.03 45.90 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 C 0.09 4.04 4.43 86.30 0.38 4.42 16 13 N -0.66 -23.98 5.69 -490.08 -2.79 -26.77 16 14 C 0.06 1.79 4.05 45.20 0.18 1.98 16 15 H 0.04 1.25 7.87 -2.39 -0.02 1.23 16 16 C -0.13 -3.42 7.88 31.23 0.25 -3.17 16 17 C -0.09 -2.19 7.77 30.88 0.24 -1.95 16 18 C -0.11 -2.52 0.99 -52.31 -0.05 -2.57 16 19 C -0.11 -2.09 7.84 30.89 0.24 -1.85 16 20 C -0.13 -2.21 8.08 31.23 0.25 -1.96 16 21 C -0.14 -3.13 6.67 30.89 0.21 -2.93 16 22 H 0.03 1.55 7.60 -2.39 -0.02 1.54 16 23 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.05 2.70 6.07 -2.39 -0.01 2.69 16 25 H 0.06 3.07 6.07 -2.39 -0.01 3.06 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 27 H 0.03 1.37 6.57 -2.39 -0.02 1.35 16 28 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.00 0.18 8.13 -2.39 -0.02 0.16 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.34 12.12 5.48 -89.70 -0.49 11.63 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -57.23 312.99 3.39 -53.84 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.48 Total: 19.83 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 3.46 Total: -42.02 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -2.59 Total: -77.55 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -57.23 3.39 -53.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414175793.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.277 kcal (2) G-P(sol) polarization free energy of solvation -57.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds