Wall clock time and date at job start Sun Mar 29 2020 21:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46894 * 109.47365 * 2 1 4 4 C 1.46894 * 111.00013 * 164.01883 * 3 2 1 5 5 C 1.50707 * 109.47258 * 293.95507 * 4 3 2 6 6 H 1.07992 * 119.99805 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99921 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00499 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99804 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47126 * 90.00431 * 9 7 5 11 11 H 1.48501 * 109.46941 * 209.99995 * 9 7 5 12 12 H 1.48496 * 109.47401 * 329.99926 * 9 7 5 13 13 C 1.46899 * 111.00180 * 287.97766 * 3 2 1 14 14 C 1.50700 * 109.47335 * 164.11899 * 13 3 2 15 15 C 1.34667 * 126.59341 * 95.38440 * 14 13 3 16 16 N 1.34129 * 108.02413 * 179.97438 * 15 14 13 17 17 C 1.30499 * 109.25052 * 359.97438 * 16 15 14 18 18 N 1.35041 * 108.70299 * 359.77444 * 17 16 15 19 19 C 1.46505 * 126.39930 * 180.26761 * 18 17 16 20 20 C 1.52995 * 109.47035 * 264.97484 * 19 18 17 21 21 H 1.08999 * 109.47479 * 185.91494 * 1 2 3 22 22 H 1.09003 * 109.46877 * 305.91036 * 1 2 3 23 23 H 1.09000 * 109.47167 * 65.90901 * 1 2 3 24 24 H 1.08997 * 109.46575 * 240.00070 * 2 1 3 25 25 H 1.08997 * 109.46915 * 120.00544 * 2 1 3 26 26 H 1.09001 * 109.47461 * 53.95421 * 4 3 2 27 27 H 1.09007 * 109.47272 * 173.95607 * 4 3 2 28 28 H 0.96995 * 120.00269 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46660 * 284.11641 * 13 3 2 30 30 H 1.08998 * 109.47605 * 44.11488 * 13 3 2 31 31 H 1.07999 * 125.99241 * 359.96645 * 15 14 13 32 32 H 1.08001 * 125.64718 * 180.02562 * 17 16 15 33 33 H 1.09004 * 109.47010 * 24.97628 * 19 18 17 34 34 H 1.08996 * 109.47240 * 144.97306 * 19 18 17 35 35 H 1.09004 * 109.47387 * 65.73052 * 20 19 18 36 36 H 1.09006 * 109.46910 * 185.72950 * 20 19 18 37 37 H 1.08998 * 109.47313 * 305.72620 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4382 1.4417 0.3776 5 6 3.5941 1.0063 1.8119 6 1 2.7263 0.7160 2.3854 7 6 4.8447 0.9776 2.3915 8 7 5.9016 1.3306 1.6930 9 14 5.0380 0.4372 4.1692 10 1 5.2539 -1.0312 4.2195 11 1 6.2045 1.1299 4.7731 12 1 3.8094 0.7832 4.9282 13 6 1.7962 2.0224 -1.3044 14 6 1.9389 3.5161 -1.1647 15 6 3.0460 4.2430 -1.4083 16 7 2.7589 5.5305 -1.1653 17 6 1.5157 5.6290 -0.7809 18 7 0.9662 4.3955 -0.7720 19 6 -0.4127 4.0606 -0.4074 20 6 -0.4657 3.6522 1.0661 21 1 -0.3634 -1.0222 0.1059 22 1 -0.3633 0.6028 0.8324 23 1 -0.3633 0.4195 -0.9382 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 4.0130 0.7778 -0.2682 27 1 3.8033 2.4628 0.2661 28 1 6.7814 1.3107 2.1009 29 1 2.5305 1.6526 -2.0201 30 1 0.7928 1.7848 -1.6579 31 1 3.9983 3.8571 -1.7409 32 1 1.0090 6.5457 -0.5177 33 1 -1.0518 4.9291 -0.5671 34 1 -0.7616 3.2341 -1.0263 35 1 -0.2146 4.5099 1.6901 36 1 -1.4699 3.3062 1.3112 37 1 0.2493 2.8497 1.2467 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417696712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:22 Heat of formation + Delta-G solvation = 59.782819 kcal Electronic energy + Delta-G solvation = -17583.078828 eV Core-core repulsion = 14975.480088 eV Total energy + Delta-G solvation = -2607.598740 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.60473 -36.93121 -34.57044 -32.62275 -31.11349 -29.61370 -29.17890 -26.80983 -24.41314 -23.44038 -22.40454 -20.91960 -20.33668 -18.94908 -16.76263 -16.40358 -15.21317 -15.01228 -14.39480 -14.12879 -14.02380 -13.80625 -13.42155 -12.89942 -12.66709 -12.42299 -12.13524 -12.02865 -11.79240 -11.54438 -11.18025 -11.04559 -10.96713 -10.70001 -10.49970 -10.21568 -9.83855 -9.40562 -9.19709 -9.04995 -8.40259 -7.82235 -7.27555 -5.98628 -3.99638 2.52093 3.22068 3.32486 3.39341 3.42645 3.70008 4.45072 4.81258 4.97943 5.09213 5.19399 5.22554 5.31588 5.36975 5.54800 5.69803 5.74411 5.87308 5.90077 5.96947 6.02400 6.04039 6.28049 6.34553 6.55436 6.63988 6.74159 6.88522 7.26681 7.36266 7.37867 7.69123 7.81149 8.13567 8.20927 8.55000 8.58918 9.06900 9.63728 11.12146 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.008449 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.328546 B = 3313.084583 C = 3798.254378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 N -0.531 5.531 4 C 0.191 3.809 5 C -0.506 4.506 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.124 3.876 14 C 0.010 3.990 15 C -0.022 4.022 16 N -0.496 5.496 17 C 0.164 3.836 18 N -0.448 5.448 19 C 0.110 3.890 20 C -0.176 4.176 21 H 0.048 0.952 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.019 0.981 25 H 0.087 0.913 26 H -0.011 1.011 27 H 0.040 0.960 28 H 0.261 0.739 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.164 0.836 32 H 0.196 0.804 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.499 2.351 -5.098 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 N -0.256 5.256 4 C 0.066 3.934 5 C -0.545 4.545 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.005 4.005 14 C -0.105 4.105 15 C -0.170 4.170 16 N -0.214 5.214 17 C -0.118 4.118 18 N -0.132 5.132 19 C -0.012 4.012 20 C -0.234 4.234 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.037 0.963 25 H 0.106 0.894 26 H 0.007 0.993 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.181 0.819 32 H 0.213 0.787 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.164 3.251 -4.778 14.377 hybrid contribution 0.148 -1.300 0.578 1.430 sum -13.016 1.951 -4.200 13.815 Atomic orbital electron populations 1.21844 0.96847 1.00539 1.01042 1.21978 0.93852 0.90291 1.01210 1.62174 1.23609 1.15546 1.24264 1.19793 0.80429 0.97577 0.95626 1.21102 0.92681 1.44061 0.96661 0.92123 1.24964 0.95951 0.95688 0.97903 1.69955 0.98605 1.48282 1.36552 0.86562 0.77664 0.78464 0.85091 1.20818 1.21281 1.19928 1.20386 1.00307 0.86981 0.92840 1.21093 0.89783 0.93026 1.06635 1.22001 0.98250 0.88924 1.07846 1.70199 1.12582 1.20700 1.17895 1.24680 0.91358 0.88810 1.06931 1.45326 1.10701 1.07503 1.49643 1.21681 0.80047 1.01567 0.97955 1.22248 1.03278 1.03889 0.93971 0.93267 0.92192 0.94058 0.96280 0.89418 0.99307 0.94178 0.92967 0.93419 0.91602 0.81900 0.78740 0.89920 0.89905 0.92561 0.91702 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.87 37.16 0.37 -1.67 16 2 C 0.05 0.99 5.53 -3.83 -0.02 0.97 16 3 N -0.53 -10.75 3.83 -237.52 -0.91 -11.66 16 4 C 0.19 4.88 4.57 -4.98 -0.02 4.85 16 5 C -0.51 -14.07 8.28 -34.44 -0.29 -14.35 16 6 H 0.06 1.66 7.25 -52.49 -0.38 1.28 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.12 2.18 5.07 -4.98 -0.03 2.15 16 14 C 0.01 0.18 5.89 -81.60 -0.48 -0.30 16 15 C -0.02 -0.44 10.69 -17.81 -0.19 -0.63 16 16 N -0.50 -9.75 11.25 -14.67 -0.17 -9.92 16 17 C 0.16 2.64 12.56 -90.38 -1.13 1.51 16 18 N -0.45 -7.01 2.75 -113.99 -0.31 -7.33 16 19 C 0.11 1.29 6.66 -4.04 -0.03 1.26 16 20 C -0.18 -2.24 10.24 37.16 0.38 -1.86 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.86 8.01 -51.93 -0.42 0.44 16 23 H 0.04 0.52 6.76 -51.93 -0.35 0.17 16 24 H 0.02 0.34 8.05 -51.93 -0.42 -0.08 16 25 H 0.09 1.78 6.59 -51.93 -0.34 1.44 16 26 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 27 H 0.04 1.13 6.41 -51.93 -0.33 0.80 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 29 H 0.05 0.85 8.05 -51.93 -0.42 0.43 16 30 H 0.07 0.99 5.73 -51.93 -0.30 0.69 16 31 H 0.16 3.26 8.06 -52.49 -0.42 2.84 16 32 H 0.20 2.30 8.06 -52.49 -0.42 1.88 16 33 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.08 0.89 7.47 -51.93 -0.39 0.51 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 1.59 7.43 -51.93 -0.39 1.21 16 LS Contribution 303.65 15.07 4.58 4.58 Total: -1.00 -31.87 303.65 -8.46 -40.33 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.82 Total: -0.14 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.54 Total: -6.56 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.65 Total: -55.00 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.87 -8.46 -40.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417696712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.112 kcal (2) G-P(sol) polarization free energy of solvation -31.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds