Wall clock time and date at job start Sun Mar 29 2020 21:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46894 * 109.47365 * 2 1 4 4 C 1.46894 * 111.00013 * 164.01883 * 3 2 1 5 5 C 1.50707 * 109.47258 * 293.95507 * 4 3 2 6 6 H 1.07992 * 119.99805 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99921 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00499 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99804 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47126 * 90.00431 * 9 7 5 11 11 H 1.48501 * 109.46941 * 209.99995 * 9 7 5 12 12 H 1.48496 * 109.47401 * 329.99926 * 9 7 5 13 13 C 1.46899 * 111.00180 * 287.97766 * 3 2 1 14 14 C 1.50700 * 109.47335 * 164.11899 * 13 3 2 15 15 C 1.34667 * 126.59341 * 95.38440 * 14 13 3 16 16 N 1.34129 * 108.02413 * 179.97438 * 15 14 13 17 17 C 1.30499 * 109.25052 * 359.97438 * 16 15 14 18 18 N 1.35041 * 108.70299 * 359.77444 * 17 16 15 19 19 C 1.46505 * 126.39930 * 180.26761 * 18 17 16 20 20 C 1.52995 * 109.47035 * 264.97484 * 19 18 17 21 21 H 1.08999 * 109.47479 * 185.91494 * 1 2 3 22 22 H 1.09003 * 109.46877 * 305.91036 * 1 2 3 23 23 H 1.09000 * 109.47167 * 65.90901 * 1 2 3 24 24 H 1.08997 * 109.46575 * 240.00070 * 2 1 3 25 25 H 1.08997 * 109.46915 * 120.00544 * 2 1 3 26 26 H 1.09001 * 109.47461 * 53.95421 * 4 3 2 27 27 H 1.09007 * 109.47272 * 173.95607 * 4 3 2 28 28 H 0.96995 * 120.00269 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46660 * 284.11641 * 13 3 2 30 30 H 1.08998 * 109.47605 * 44.11488 * 13 3 2 31 31 H 1.07999 * 125.99241 * 359.96645 * 15 14 13 32 32 H 1.08001 * 125.64718 * 180.02562 * 17 16 15 33 33 H 1.09004 * 109.47010 * 24.97628 * 19 18 17 34 34 H 1.08996 * 109.47240 * 144.97306 * 19 18 17 35 35 H 1.09004 * 109.47387 * 65.73052 * 20 19 18 36 36 H 1.09006 * 109.46910 * 185.72950 * 20 19 18 37 37 H 1.08998 * 109.47313 * 305.72620 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4382 1.4417 0.3776 5 6 3.5941 1.0063 1.8119 6 1 2.7263 0.7160 2.3854 7 6 4.8447 0.9776 2.3915 8 7 5.9016 1.3306 1.6930 9 14 5.0380 0.4372 4.1692 10 1 5.2539 -1.0312 4.2195 11 1 6.2045 1.1299 4.7731 12 1 3.8094 0.7832 4.9282 13 6 1.7962 2.0224 -1.3044 14 6 1.9389 3.5161 -1.1647 15 6 3.0460 4.2430 -1.4083 16 7 2.7589 5.5305 -1.1653 17 6 1.5157 5.6290 -0.7809 18 7 0.9662 4.3955 -0.7720 19 6 -0.4127 4.0606 -0.4074 20 6 -0.4657 3.6522 1.0661 21 1 -0.3634 -1.0222 0.1059 22 1 -0.3633 0.6028 0.8324 23 1 -0.3633 0.4195 -0.9382 24 1 1.8932 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 4.0130 0.7778 -0.2682 27 1 3.8033 2.4628 0.2661 28 1 6.7814 1.3107 2.1009 29 1 2.5305 1.6526 -2.0201 30 1 0.7928 1.7848 -1.6579 31 1 3.9983 3.8571 -1.7409 32 1 1.0090 6.5457 -0.5177 33 1 -1.0518 4.9291 -0.5671 34 1 -0.7616 3.2341 -1.0263 35 1 -0.2146 4.5099 1.6901 36 1 -1.4699 3.3062 1.3112 37 1 0.2493 2.8497 1.2467 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000417696712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:22 Heat of formation + Delta-G solvation = 40.122570 kcal Electronic energy + Delta-G solvation = -17583.931360 eV Core-core repulsion = 14975.480088 eV Total energy + Delta-G solvation = -2608.451272 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.93644 -38.56013 -35.72388 -34.75128 -32.46588 -31.01887 -30.60400 -28.58523 -26.05760 -24.52050 -24.16043 -22.25799 -21.89789 -20.30944 -18.53073 -17.99087 -16.84739 -16.52781 -15.99765 -15.53943 -15.51304 -15.10485 -14.77868 -14.27330 -14.21750 -13.97110 -13.60829 -13.46240 -13.21791 -12.81692 -12.73099 -12.64411 -12.47651 -12.31703 -12.02227 -11.79128 -11.61695 -11.22032 -10.81333 -10.59921 -10.37167 -9.27011 -8.96476 -8.18065 -6.27193 1.17062 1.38190 1.40133 1.50867 2.05605 2.26900 2.40125 3.14735 3.42524 3.83791 3.92558 3.96705 4.16557 4.28814 4.35351 4.42593 4.48477 4.59016 4.62208 4.78260 4.80989 4.94855 5.02616 5.09042 5.16320 5.23020 5.41083 5.45982 5.51915 5.57815 5.67405 5.85332 6.09669 6.37743 6.49513 6.64173 6.89604 7.22024 7.41561 8.92889 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.008449 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.328546 B = 3313.084583 C = 3798.254378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.527 5.527 4 C 0.210 3.790 5 C -0.516 4.516 6 H 0.063 0.937 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.129 3.871 14 C 0.005 3.995 15 C -0.057 4.057 16 N -0.538 5.538 17 C 0.177 3.823 18 N -0.444 5.444 19 C 0.104 3.896 20 C -0.171 4.171 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.021 0.979 25 H 0.060 0.940 26 H -0.044 1.044 27 H 0.007 0.993 28 H 0.262 0.738 29 H 0.038 0.962 30 H 0.102 0.898 31 H 0.142 0.858 32 H 0.241 0.759 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.784 2.375 -4.404 17.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.076 4.076 3 N -0.252 5.252 4 C 0.083 3.917 5 C -0.554 4.554 6 H 0.081 0.919 7 C -0.199 4.199 8 N -0.575 5.575 9 Si 0.789 3.211 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.189 1.189 13 C 0.000 4.000 14 C -0.112 4.112 15 C -0.205 4.205 16 N -0.257 5.257 17 C -0.105 4.105 18 N -0.126 5.126 19 C -0.016 4.016 20 C -0.229 4.229 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.039 0.961 25 H 0.078 0.922 26 H -0.026 1.026 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.159 0.841 32 H 0.257 0.743 33 H 0.142 0.858 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.114 0.886 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.495 3.254 -4.089 17.303 hybrid contribution 1.114 -1.272 0.328 1.722 sum -15.381 1.982 -3.761 15.958 Atomic orbital electron populations 1.21729 0.92838 1.02181 1.02137 1.22052 0.97023 0.88590 0.99964 1.62089 1.19713 1.17208 1.26154 1.19347 0.83367 0.94529 0.94415 1.21431 0.92814 1.43542 0.97635 0.91929 1.25899 0.95650 0.95750 1.02568 1.70105 0.99114 1.49626 1.38614 0.85455 0.77736 0.78409 0.79457 1.19627 1.21214 1.18906 1.20416 1.01932 0.86490 0.91187 1.21054 0.90114 0.93432 1.06614 1.21935 0.98549 0.90086 1.09943 1.70124 1.15021 1.20560 1.19970 1.25536 0.90401 0.90309 1.04266 1.45570 1.11803 1.06721 1.48545 1.22083 0.78097 1.04129 0.97309 1.22181 1.03831 1.02202 0.94679 0.91136 0.92288 0.91917 0.96111 0.92188 1.02635 0.97479 0.92960 0.94421 0.87950 0.84052 0.74286 0.85753 0.88372 0.93238 0.88638 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.87 71.98 0.71 -2.57 16 2 C 0.05 1.83 5.53 86.30 0.48 2.31 16 3 N -0.53 -21.55 3.83 -905.39 -3.46 -25.01 16 4 C 0.21 11.26 4.57 85.56 0.39 11.65 16 5 C -0.52 -29.44 8.28 25.60 0.21 -29.23 16 6 H 0.06 3.47 7.25 -2.91 -0.02 3.45 16 7 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 8 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 9 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.13 4.47 5.07 85.56 0.43 4.91 16 14 C 0.00 0.17 5.89 40.95 0.24 0.41 16 15 C -0.06 -2.42 10.69 83.52 0.89 -1.53 16 16 N -0.54 -21.48 11.25 -200.31 -2.25 -23.73 16 17 C 0.18 5.38 12.56 180.26 2.26 7.65 16 18 N -0.44 -12.97 2.75 -514.56 -1.42 -14.38 16 19 C 0.10 2.00 6.66 86.38 0.58 2.57 16 20 C -0.17 -3.80 10.24 71.98 0.74 -3.07 16 21 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.06 1.51 8.01 -2.39 -0.02 1.49 16 23 H 0.06 1.31 6.76 -2.39 -0.02 1.29 16 24 H 0.02 0.72 8.05 -2.39 -0.02 0.70 16 25 H 0.06 2.46 6.59 -2.39 -0.02 2.44 16 26 H -0.04 -2.59 8.12 -2.39 -0.02 -2.61 16 27 H 0.01 0.43 6.41 -2.38 -0.02 0.41 16 28 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.04 1.39 8.05 -2.39 -0.02 1.37 16 30 H 0.10 2.79 5.73 -2.39 -0.01 2.77 16 31 H 0.14 6.30 8.06 -2.91 -0.02 6.27 16 32 H 0.24 4.72 8.06 -2.91 -0.02 4.69 16 33 H 0.12 1.44 8.13 -2.38 -0.02 1.42 16 34 H 0.10 1.63 7.47 -2.39 -0.02 1.61 16 35 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.05 1.72 7.43 -2.39 -0.02 1.70 16 Total: -1.00 -73.26 303.65 3.61 -69.66 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.03 Total: 10.45 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 7.40 Total: -6.49 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -6.85 Total: -120.92 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -73.26 3.61 -69.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417696712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.779 kcal (2) G-P(sol) polarization free energy of solvation -73.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds