Wall clock time and date at job start Sun Mar 29 2020 21:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00057 * 2 1 4 4 H 1.48506 * 109.47178 * 270.00594 * 3 2 1 5 5 H 1.48497 * 109.47274 * 30.00289 * 3 2 1 6 6 H 1.48500 * 109.47335 * 150.00456 * 3 2 1 7 7 C 1.37876 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99854 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00322 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47134 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47008 * 185.14020 * 10 9 7 12 12 C 1.47897 * 110.99759 * 184.29090 * 11 10 9 13 13 C 1.53992 * 107.05879 * 145.84391 * 12 11 10 14 14 C 1.54597 * 105.13783 * 358.77329 * 13 12 11 15 15 H 1.09001 * 110.72141 * 96.58134 * 14 13 12 16 16 C 1.52997 * 110.72384 * 219.68292 * 14 13 12 17 17 C 1.54969 * 110.92583 * 185.08904 * 16 14 13 18 18 C 1.54261 * 104.16287 * 156.29479 * 17 16 14 19 19 C 1.53875 * 106.64355 * 336.44617 * 18 17 16 20 20 C 1.54265 * 106.59309 * 359.97438 * 19 18 17 21 21 C 1.48531 * 110.99794 * 301.68627 * 11 10 9 22 22 H 0.97005 * 119.99738 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.47208 * 60.00030 * 9 7 2 24 24 H 1.08997 * 109.47424 * 299.99672 * 9 7 2 25 25 H 1.08997 * 109.46751 * 65.14008 * 10 9 7 26 26 H 1.08996 * 109.46687 * 305.14247 * 10 9 7 27 27 H 1.09004 * 109.91892 * 26.49341 * 12 11 10 28 28 H 1.08997 * 110.08497 * 265.28673 * 12 11 10 29 29 H 1.09002 * 110.31161 * 239.85518 * 13 12 11 30 30 H 1.09005 * 110.31038 * 117.69234 * 13 12 11 31 31 H 1.09001 * 110.67552 * 61.78195 * 16 14 13 32 32 H 1.08997 * 110.47413 * 37.63973 * 17 16 14 33 33 H 1.09001 * 110.52728 * 274.98115 * 17 16 14 34 34 H 1.08996 * 110.03723 * 217.13289 * 18 17 16 35 35 H 1.09007 * 110.02707 * 95.75379 * 18 17 16 36 36 H 1.08999 * 110.02798 * 119.25527 * 19 18 17 37 37 H 1.08993 * 110.03382 * 240.64226 * 19 18 17 38 38 H 1.09010 * 110.48481 * 142.29104 * 20 19 18 39 39 H 1.08997 * 110.48767 * 264.79556 * 20 19 18 40 40 H 1.09004 * 110.67126 * 81.84868 * 21 11 10 41 41 H 1.08998 * 110.67305 * 318.71518 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4854 -2.6383 0.1225 12 6 6.0239 -4.0122 0.0234 13 6 7.3877 -3.9128 -0.6850 14 6 7.5679 -2.4111 -1.0049 15 1 8.1712 -1.9234 -0.2392 16 6 8.1963 -2.2237 -2.3872 17 6 8.4964 -0.7281 -2.6607 18 6 9.6177 -0.7556 -3.7197 19 6 10.3206 -2.1175 -3.5821 20 6 9.6025 -2.8708 -2.4434 21 6 6.1140 -1.8760 -0.9864 22 1 -0.4850 0.8401 0.0004 23 1 3.8753 -0.6804 0.8888 24 1 3.8746 -0.6800 -0.8911 25 1 3.7350 -3.1232 -0.9332 26 1 3.5853 -3.1760 0.8396 27 1 5.3467 -4.6353 -0.5608 28 1 6.1528 -4.4365 1.0191 29 1 7.3797 -4.4974 -1.6049 30 1 8.1832 -4.2571 -0.0241 31 1 7.5504 -2.6355 -3.1627 32 1 8.8422 -0.2362 -1.7515 33 1 7.6121 -0.2266 -3.0541 34 1 10.3268 0.0510 -3.5337 35 1 9.1912 -0.6547 -4.7177 36 1 10.2344 -2.6778 -4.5130 37 1 11.3709 -1.9718 -3.3301 38 1 9.5247 -3.9325 -2.6780 39 1 10.1287 -2.7273 -1.4997 40 1 6.1004 -0.8068 -0.7745 41 1 5.6139 -2.0883 -1.9313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420965404.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:37 Heat of formation + Delta-G solvation = -27.675170 kcal Electronic energy + Delta-G solvation = -17244.879319 eV Core-core repulsion = 14737.028459 eV Total energy + Delta-G solvation = -2507.850860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43417 -37.39747 -33.73607 -32.14421 -30.20163 -29.06746 -28.19719 -26.83701 -24.16490 -21.62547 -21.08460 -20.12373 -19.68531 -19.52974 -16.84841 -15.97917 -15.63363 -15.30829 -14.34265 -14.15220 -13.81962 -13.51286 -13.39387 -12.97317 -12.61974 -12.32782 -12.00832 -11.87376 -11.55833 -11.38909 -11.24092 -11.13129 -10.89102 -10.77184 -10.53581 -10.39816 -10.33776 -10.21900 -9.93702 -9.81681 -9.67766 -9.17944 -8.51370 -7.87871 -6.02465 -4.00389 3.32854 3.40397 3.46507 4.38184 4.41333 4.48028 4.57398 4.71002 4.92728 5.00515 5.13331 5.32219 5.33541 5.37041 5.47082 5.50798 5.59773 5.63552 5.71646 5.78759 5.83381 5.87103 5.97195 5.99348 6.00667 6.10878 6.13295 6.15430 6.24853 6.30320 6.35994 6.41349 6.53698 6.78660 7.19471 7.29417 7.50407 7.67878 7.87716 8.55444 9.01720 9.60207 11.10997 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.005648 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.020221 B = 4956.480269 C = 5730.501426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.009 4.009 10 C 0.062 3.938 11 N -0.522 5.522 12 C 0.034 3.966 13 C -0.123 4.123 14 C -0.084 4.084 15 H 0.080 0.920 16 C -0.083 4.083 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.117 4.117 21 C 0.045 3.955 22 H 0.263 0.737 23 H 0.025 0.975 24 H 0.009 0.991 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.554 -4.986 -5.631 21.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.046 4.046 10 C -0.065 4.065 11 N -0.246 5.246 12 C -0.095 4.095 13 C -0.161 4.161 14 C -0.103 4.103 15 H 0.098 0.902 16 C -0.102 4.102 17 C -0.159 4.159 18 C -0.163 4.163 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.083 4.083 22 H 0.072 0.928 23 H 0.043 0.957 24 H 0.028 0.972 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 20.499 -4.645 -5.115 21.632 hybrid contribution -0.009 0.512 -0.826 0.972 sum 20.490 -4.134 -5.941 21.731 Atomic orbital electron populations 1.69918 1.06306 1.26872 1.51257 1.24990 0.94703 0.99135 0.94502 0.86781 0.80581 0.83555 0.78465 1.20385 1.21379 1.18745 1.21093 0.89440 0.94504 1.50863 0.91131 1.19575 0.96643 0.91742 0.96661 1.22290 0.84449 1.00384 0.99354 1.64838 1.07708 1.09329 1.42730 1.22833 0.94947 0.91678 1.00012 1.22430 0.97233 0.96471 0.99944 1.22123 0.96431 0.95599 0.96138 0.90176 1.22167 0.95890 0.95562 0.96542 1.22439 0.98241 0.96393 0.98821 1.22132 0.97688 0.97141 0.99332 1.22130 0.99201 0.96169 0.98770 1.22392 0.95553 0.99066 0.98495 1.23201 0.92587 0.99343 0.93197 0.92752 0.95677 0.97229 0.95671 0.91312 0.94229 0.90986 0.91841 0.91558 0.90751 0.91444 0.91482 0.92139 0.92085 0.92171 0.92193 0.91939 0.91608 0.90278 0.93880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.21 3.72 -27.88 -0.10 -0.32 16 10 C 0.06 1.32 4.78 -3.82 -0.02 1.31 16 11 N -0.52 -9.44 5.35 -230.46 -1.23 -10.67 16 12 C 0.03 0.49 6.70 -2.76 -0.02 0.48 16 13 C -0.12 -1.47 5.97 -25.37 -0.15 -1.62 16 14 C -0.08 -1.06 2.56 -88.76 -0.23 -1.29 16 15 H 0.08 1.02 8.11 -51.93 -0.42 0.60 16 16 C -0.08 -0.90 2.26 -88.58 -0.20 -1.10 16 17 C -0.12 -1.29 6.07 -25.03 -0.15 -1.45 16 18 C -0.13 -1.15 6.80 -25.62 -0.17 -1.32 16 19 C -0.13 -1.07 6.80 -25.61 -0.17 -1.25 16 20 C -0.12 -1.08 5.74 -25.07 -0.14 -1.23 16 21 C 0.04 0.73 4.58 -1.90 -0.01 0.72 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 24 H 0.01 0.23 6.61 -51.93 -0.34 -0.11 16 25 H 0.03 0.53 7.97 -51.93 -0.41 0.12 16 26 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.04 0.59 7.67 -51.93 -0.40 0.19 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.71 7.85 -51.93 -0.41 0.30 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 39 H 0.07 0.60 8.05 -51.93 -0.42 0.18 16 40 H 0.08 1.36 7.77 -51.93 -0.40 0.96 16 41 H 0.04 0.72 7.89 -51.93 -0.41 0.31 16 LS Contribution 313.47 15.07 4.72 4.72 Total: -1.00 -30.55 313.47 -10.03 -40.57 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -7.82 Total: -3.90 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.80 Total: -20.69 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -0.46 Total: -38.23 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.55 -10.03 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420965404.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.897 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds