Wall clock time and date at job start Sun Mar 29 2020 21:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00057 * 2 1 4 4 H 1.48506 * 109.47178 * 270.00594 * 3 2 1 5 5 H 1.48497 * 109.47274 * 30.00289 * 3 2 1 6 6 H 1.48500 * 109.47335 * 150.00456 * 3 2 1 7 7 C 1.37876 * 120.00346 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99854 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00322 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.47134 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.47008 * 185.14020 * 10 9 7 12 12 C 1.47897 * 110.99759 * 184.29090 * 11 10 9 13 13 C 1.53992 * 107.05879 * 145.84391 * 12 11 10 14 14 C 1.54597 * 105.13783 * 358.77329 * 13 12 11 15 15 H 1.09001 * 110.72141 * 96.58134 * 14 13 12 16 16 C 1.52997 * 110.72384 * 219.68292 * 14 13 12 17 17 C 1.54969 * 110.92583 * 185.08904 * 16 14 13 18 18 C 1.54261 * 104.16287 * 156.29479 * 17 16 14 19 19 C 1.53875 * 106.64355 * 336.44617 * 18 17 16 20 20 C 1.54265 * 106.59309 * 359.97438 * 19 18 17 21 21 C 1.48531 * 110.99794 * 301.68627 * 11 10 9 22 22 H 0.97005 * 119.99738 * 359.97438 * 1 2 3 23 23 H 1.08992 * 109.47208 * 60.00030 * 9 7 2 24 24 H 1.08997 * 109.47424 * 299.99672 * 9 7 2 25 25 H 1.08997 * 109.46751 * 65.14008 * 10 9 7 26 26 H 1.08996 * 109.46687 * 305.14247 * 10 9 7 27 27 H 1.09004 * 109.91892 * 26.49341 * 12 11 10 28 28 H 1.08997 * 110.08497 * 265.28673 * 12 11 10 29 29 H 1.09002 * 110.31161 * 239.85518 * 13 12 11 30 30 H 1.09005 * 110.31038 * 117.69234 * 13 12 11 31 31 H 1.09001 * 110.67552 * 61.78195 * 16 14 13 32 32 H 1.08997 * 110.47413 * 37.63973 * 17 16 14 33 33 H 1.09001 * 110.52728 * 274.98115 * 17 16 14 34 34 H 1.08996 * 110.03723 * 217.13289 * 18 17 16 35 35 H 1.09007 * 110.02707 * 95.75379 * 18 17 16 36 36 H 1.08999 * 110.02798 * 119.25527 * 19 18 17 37 37 H 1.08993 * 110.03382 * 240.64226 * 19 18 17 38 38 H 1.09010 * 110.48481 * 142.29104 * 20 19 18 39 39 H 1.08997 * 110.48767 * 264.79556 * 20 19 18 40 40 H 1.09004 * 110.67126 * 81.84868 * 21 11 10 41 41 H 1.08998 * 110.67305 * 318.71518 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4854 -2.6383 0.1225 12 6 6.0239 -4.0122 0.0234 13 6 7.3877 -3.9128 -0.6850 14 6 7.5679 -2.4111 -1.0049 15 1 8.1712 -1.9234 -0.2392 16 6 8.1963 -2.2237 -2.3872 17 6 8.4964 -0.7281 -2.6607 18 6 9.6177 -0.7556 -3.7197 19 6 10.3206 -2.1175 -3.5821 20 6 9.6025 -2.8708 -2.4434 21 6 6.1140 -1.8760 -0.9864 22 1 -0.4850 0.8401 0.0004 23 1 3.8753 -0.6804 0.8888 24 1 3.8746 -0.6800 -0.8911 25 1 3.7350 -3.1232 -0.9332 26 1 3.5853 -3.1760 0.8396 27 1 5.3467 -4.6353 -0.5608 28 1 6.1528 -4.4365 1.0191 29 1 7.3797 -4.4974 -1.6049 30 1 8.1832 -4.2571 -0.0241 31 1 7.5504 -2.6355 -3.1627 32 1 8.8422 -0.2362 -1.7515 33 1 7.6121 -0.2266 -3.0541 34 1 10.3268 0.0510 -3.5337 35 1 9.1912 -0.6547 -4.7177 36 1 10.2344 -2.6778 -4.5130 37 1 11.3709 -1.9718 -3.3301 38 1 9.5247 -3.9325 -2.6780 39 1 10.1287 -2.7273 -1.4997 40 1 6.1004 -0.8068 -0.7745 41 1 5.6139 -2.0883 -1.9313 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420965404.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:37 Heat of formation + Delta-G solvation = -45.811820 kcal Electronic energy + Delta-G solvation = -17245.665783 eV Core-core repulsion = 14737.028459 eV Total energy + Delta-G solvation = -2508.637324 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.52292 -38.42822 -35.58866 -33.90747 -31.61394 -30.19417 -29.26998 -27.95871 -25.93324 -23.09912 -22.08688 -21.40531 -20.84198 -20.48546 -19.00971 -17.05285 -16.65078 -16.46033 -16.26310 -15.59842 -15.10623 -14.90085 -14.53617 -14.17370 -13.99048 -13.77739 -13.54928 -13.19516 -12.82513 -12.77369 -12.54014 -12.09916 -11.90982 -11.83847 -11.78437 -11.72064 -11.52624 -11.41748 -11.30270 -11.29393 -11.20331 -11.15461 -10.79329 -9.32471 -8.32912 -6.37505 1.32635 1.35394 1.48472 2.33775 3.02344 3.11876 3.52151 3.73444 3.81693 3.90176 4.05683 4.20854 4.34826 4.39106 4.46894 4.52581 4.63491 4.66950 4.75122 4.76401 4.83522 4.85924 4.89243 4.91374 4.98397 5.05906 5.11724 5.15422 5.20529 5.25583 5.26493 5.37657 5.39898 5.42959 5.55577 5.60092 5.61438 6.04323 6.15083 6.26690 6.69634 7.27415 8.83889 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.028333 B = 0.005648 C = 0.004885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.020221 B = 4956.480269 C = 5730.501426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.536 4.536 8 H 0.032 0.968 9 C 0.001 3.999 10 C 0.075 3.925 11 N -0.533 5.533 12 C 0.029 3.971 13 C -0.114 4.114 14 C -0.073 4.073 15 H 0.083 0.917 16 C -0.081 4.081 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.113 4.113 21 C 0.040 3.960 22 H 0.268 0.732 23 H 0.020 0.980 24 H 0.015 0.985 25 H 0.019 0.981 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.532 -4.716 -5.999 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.174 1.174 7 C -0.574 4.574 8 H 0.050 0.950 9 C -0.037 4.037 10 C -0.054 4.054 11 N -0.257 5.257 12 C -0.099 4.099 13 C -0.151 4.151 14 C -0.092 4.092 15 H 0.101 0.899 16 C -0.100 4.100 17 C -0.163 4.163 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.150 4.150 21 C -0.088 4.088 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 23.495 -4.395 -5.487 24.524 hybrid contribution -1.009 0.360 -0.702 1.281 sum 22.486 -4.035 -6.189 23.668 Atomic orbital electron populations 1.70060 1.08218 1.28273 1.52393 1.25956 0.95599 1.03391 0.93874 0.85666 0.79504 0.78285 0.79296 1.18992 1.20546 1.17355 1.21409 0.91842 0.93292 1.50875 0.94961 1.19421 0.93648 0.94174 0.96414 1.21980 0.86959 0.97775 0.98639 1.64776 1.05379 1.11801 1.43725 1.22958 0.96325 0.89606 1.01017 1.22415 0.95982 0.96084 1.00658 1.22054 0.93904 0.95812 0.97407 0.89885 1.22122 0.96819 0.95954 0.95069 1.22456 0.98359 0.96164 0.99285 1.22132 0.97329 0.98013 0.98736 1.22132 0.99632 0.95543 0.98802 1.22366 0.94122 0.99468 0.99052 1.23252 0.94940 0.98597 0.92011 0.92338 0.96145 0.96664 0.96325 0.92283 0.94563 0.90097 0.90577 0.89348 0.91458 0.91538 0.92798 0.91419 0.92102 0.91667 0.91089 0.91066 0.91131 0.91588 0.94865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 2 C 0.01 0.54 5.47 84.65 0.46 1.00 16 3 Si 0.95 45.68 27.47 68.60 1.88 47.56 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 7 C -0.54 -32.19 9.66 25.60 0.25 -31.94 16 8 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 9 C 0.00 0.06 3.72 29.85 0.11 0.17 16 10 C 0.07 3.20 4.78 86.31 0.41 3.61 16 11 N -0.53 -18.85 5.35 -883.04 -4.73 -23.58 16 12 C 0.03 0.80 6.70 86.45 0.58 1.38 16 13 C -0.11 -2.39 5.97 31.47 0.19 -2.20 16 14 C -0.07 -1.68 2.56 -9.59 -0.02 -1.70 16 15 H 0.08 1.90 8.11 -2.39 -0.02 1.88 16 16 C -0.08 -1.58 2.26 -9.47 -0.02 -1.60 16 17 C -0.12 -2.46 6.07 31.70 0.19 -2.27 16 18 C -0.12 -2.01 6.80 31.32 0.21 -1.80 16 19 C -0.12 -1.75 6.80 31.32 0.21 -1.53 16 20 C -0.11 -1.72 5.74 31.67 0.18 -1.53 16 21 C 0.04 1.26 4.58 86.65 0.40 1.66 16 22 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 23 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 24 H 0.02 0.74 6.61 -2.39 -0.02 0.72 16 25 H 0.02 0.81 7.97 -2.39 -0.02 0.79 16 26 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.04 1.03 7.67 -2.38 -0.02 1.01 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.08 1.44 7.85 -2.39 -0.02 1.42 16 30 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 32 H 0.07 1.31 8.03 -2.39 -0.02 1.29 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.07 1.03 8.05 -2.39 -0.02 1.01 16 40 H 0.07 2.23 7.77 -2.39 -0.02 2.21 16 41 H 0.03 1.11 7.89 -2.39 -0.02 1.09 16 Total: -1.00 -66.28 313.47 1.50 -64.78 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.89 Total: 8.44 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 3.15 Total: -36.77 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -4.43 Total: -84.01 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.56 kcal Total: -66.28 1.50 -64.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420965404.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.967 kcal (2) G-P(sol) polarization free energy of solvation -66.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds