Wall clock time and date at job start Sun Mar 29 2020 21:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00194 * 2 1 4 4 H 1.48492 * 109.47497 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46837 * 300.00111 * 3 2 1 6 6 H 1.48500 * 109.47203 * 59.99691 * 3 2 1 7 7 C 1.37881 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99741 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47150 * 185.65092 * 11 10 9 13 13 C 1.46901 * 111.00099 * 163.09743 * 12 11 10 14 14 C 1.53780 * 113.61380 * 38.09039 * 13 12 11 15 15 C 1.53951 * 87.01816 * 220.04586 * 14 13 12 16 16 C 1.53772 * 113.61491 * 300.48176 * 13 12 11 17 17 C 1.46907 * 111.00214 * 287.05047 * 12 11 10 18 18 C 1.53778 * 113.61755 * 170.87854 * 17 12 11 19 19 C 1.53955 * 87.01999 * 220.05167 * 18 17 12 20 20 C 1.53783 * 113.60995 * 73.26925 * 17 12 11 21 21 H 0.96998 * 120.00054 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46856 * 60.00114 * 9 7 2 23 23 H 1.09003 * 109.46870 * 300.00734 * 9 7 2 24 24 H 1.09005 * 109.47094 * 300.00324 * 10 9 7 25 25 H 1.08997 * 109.47230 * 60.00248 * 10 9 7 26 26 H 1.09005 * 109.46902 * 305.64867 * 11 10 9 27 27 H 1.08998 * 109.47398 * 65.64730 * 11 10 9 28 28 H 1.09008 * 112.84803 * 169.28348 * 13 12 11 29 29 H 1.08996 * 113.61302 * 334.56812 * 14 13 12 30 30 H 1.09004 * 113.61551 * 105.46859 * 14 13 12 31 31 H 1.08994 * 113.54285 * 270.80802 * 15 14 13 32 32 H 1.09001 * 113.74298 * 139.94302 * 15 14 13 33 33 H 1.09005 * 113.61422 * 254.52854 * 16 13 12 34 34 H 1.08998 * 113.61867 * 25.42977 * 16 13 12 35 35 H 1.08998 * 112.84654 * 302.07988 * 17 12 11 36 36 H 1.09003 * 113.61563 * 334.56801 * 18 17 12 37 37 H 1.08996 * 113.61156 * 105.47179 * 18 17 12 38 38 H 1.09001 * 113.53350 * 270.81021 * 19 18 17 39 39 H 1.08996 * 113.74401 * 139.94276 * 19 18 17 40 40 H 1.08998 * 113.61257 * 254.52991 * 20 17 12 41 41 H 1.08994 * 113.61773 * 25.44038 * 20 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4291 -6.1003 0.1352 13 6 1.7395 -7.3335 0.5372 14 6 0.3627 -7.5129 -0.1240 15 6 -0.1321 -8.0395 1.2354 16 6 0.9954 -7.2142 1.8776 17 6 3.1865 -6.3018 -1.1074 18 6 4.3475 -7.3001 -0.9661 19 6 5.1673 -6.3496 -1.8576 20 6 4.2486 -5.2196 -1.3637 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.8721 -3.6043 -0.8905 25 1 2.8720 -3.6043 0.8894 26 1 0.7797 -5.0025 0.8337 27 1 0.9320 -5.0897 -0.9376 28 1 2.3756 -8.2160 0.4678 29 1 -0.1029 -6.5744 -0.4246 30 1 0.3523 -8.2638 -0.9142 31 1 -0.0090 -9.1156 1.3564 32 1 -1.1314 -7.6952 1.5020 33 1 1.4951 -7.7243 2.7013 34 1 0.7030 -6.1939 2.1255 35 1 2.5452 -6.4965 -1.9670 36 1 4.7304 -7.3835 0.0511 37 1 4.1490 -8.2684 -1.4254 38 1 5.0686 -6.5586 -2.9228 39 1 6.2048 -6.2380 -1.5425 40 1 3.9703 -4.5108 -2.1436 41 1 4.6043 -4.7332 -0.4555 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429167134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:46 Heat of formation + Delta-G solvation = 31.185710 kcal Electronic energy + Delta-G solvation = -17472.841030 eV Core-core repulsion = 14967.542570 eV Total energy + Delta-G solvation = -2505.298460 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.00828 -37.81584 -34.57770 -32.86449 -30.84765 -26.87059 -25.61338 -25.34556 -24.73785 -23.58949 -21.79254 -20.32553 -19.04065 -18.44147 -16.38459 -16.13854 -15.52336 -15.34629 -14.98662 -14.37236 -13.66959 -13.34147 -12.71797 -12.48497 -12.37937 -12.22378 -12.16194 -11.75293 -11.48650 -11.32669 -11.07698 -10.85906 -10.65416 -10.54317 -10.49087 -10.40522 -10.26515 -9.97458 -9.88786 -9.41046 -9.14149 -8.98659 -8.29387 -7.89722 -5.95086 -3.96517 3.33993 3.41326 3.45962 4.17449 4.50848 4.70209 4.77125 4.80646 4.85256 4.98882 5.04596 5.10816 5.13026 5.40876 5.54266 5.72517 5.74223 5.78003 5.79677 5.92249 5.96741 5.97171 6.03654 6.06368 6.09973 6.19963 6.27159 6.37092 6.46512 6.54242 6.64428 6.82834 6.92585 7.25209 7.50926 7.57753 7.75513 7.91907 8.06571 8.50554 9.11248 9.67244 11.16514 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.006111 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.199991 B = 4580.630196 C = 5529.321998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.109 4.109 11 C 0.055 3.945 12 N -0.517 5.517 13 C 0.066 3.934 14 C -0.181 4.181 15 C -0.141 4.141 16 C -0.134 4.134 17 C 0.059 3.941 18 C -0.129 4.129 19 C -0.146 4.146 20 C -0.123 4.123 21 H 0.259 0.741 22 H 0.011 0.989 23 H 0.013 0.987 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.028 0.972 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 -16.604 -0.876 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.147 4.147 11 C -0.072 4.072 12 N -0.239 5.239 13 C -0.043 4.043 14 C -0.220 4.220 15 C -0.178 4.178 16 C -0.172 4.172 17 C -0.050 4.050 18 C -0.167 4.167 19 C -0.184 4.184 20 C -0.161 4.161 21 H 0.068 0.932 22 H 0.030 0.970 23 H 0.031 0.969 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.114 0.886 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.848 -16.357 -0.507 17.068 hybrid contribution -0.330 0.736 -0.674 1.051 sum 4.518 -15.621 -1.180 16.304 Atomic orbital electron populations 1.69979 1.06054 1.26340 1.51357 1.25030 0.94822 0.99210 0.95511 0.86567 0.80181 0.83943 0.77510 1.19726 1.21103 1.21063 1.21299 0.93058 0.91047 1.49853 0.92666 1.19084 0.94110 0.91596 0.96847 1.21813 0.99242 0.92531 1.01130 1.22340 0.94210 0.91089 0.99588 1.62301 1.26756 1.04269 1.30578 1.23138 0.92010 0.93292 0.95904 1.23713 0.99384 1.01878 0.97032 1.22723 0.98839 0.99428 0.96857 1.23108 0.96352 1.01088 0.96651 1.23061 0.93269 0.97521 0.91136 1.22985 0.96549 0.96601 1.00526 1.22809 0.98716 0.97762 0.99124 1.23065 0.95320 0.95868 1.01808 0.93172 0.97016 0.96865 0.92587 0.92842 0.91162 0.95343 0.88609 0.89258 0.92220 0.90645 0.91493 0.91609 0.89206 0.92397 0.89506 0.92396 0.90747 0.91473 0.91358 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.51 -14.83 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.31 4.33 -26.73 -0.12 -2.43 16 11 C 0.05 0.97 3.51 -3.83 -0.01 0.96 16 12 N -0.52 -7.84 4.58 -216.79 -0.99 -8.83 16 13 C 0.07 0.85 3.72 -66.90 -0.25 0.60 16 14 C -0.18 -2.26 7.36 -25.83 -0.19 -2.45 16 15 C -0.14 -1.57 8.09 -25.83 -0.21 -1.78 16 16 C -0.13 -1.68 7.53 -25.92 -0.20 -1.88 16 17 C 0.06 0.82 3.10 -66.90 -0.21 0.61 16 18 C -0.13 -1.50 6.87 -25.83 -0.18 -1.67 16 19 C -0.15 -1.68 8.09 -25.83 -0.21 -1.89 16 20 C -0.12 -1.76 5.36 -25.92 -0.14 -1.90 16 21 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 1.16 5.10 -51.93 -0.26 0.89 16 25 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.27 5.72 -51.93 -0.30 0.97 16 27 H 0.03 0.52 7.02 -51.93 -0.36 0.15 16 28 H 0.10 1.14 7.35 -51.92 -0.38 0.76 16 29 H 0.09 1.27 5.84 -51.93 -0.30 0.96 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.28 6.23 -51.93 -0.32 0.96 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.03 7.41 -51.93 -0.38 0.65 16 41 H 0.09 1.48 7.61 -51.93 -0.40 1.08 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -29.69 312.24 -10.15 -39.84 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.33 Total: -0.97 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -2.25 Total: -25.03 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: -0.26 Total: -35.53 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.69 -10.15 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429167134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.028 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds