Wall clock time and date at job start Sun Mar 29 2020 21:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00194 * 2 1 4 4 H 1.48492 * 109.47497 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46837 * 300.00111 * 3 2 1 6 6 H 1.48500 * 109.47203 * 59.99691 * 3 2 1 7 7 C 1.37881 * 120.00064 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99741 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47119 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47150 * 185.65092 * 11 10 9 13 13 C 1.46901 * 111.00099 * 163.09743 * 12 11 10 14 14 C 1.53780 * 113.61380 * 38.09039 * 13 12 11 15 15 C 1.53951 * 87.01816 * 220.04586 * 14 13 12 16 16 C 1.53772 * 113.61491 * 300.48176 * 13 12 11 17 17 C 1.46907 * 111.00214 * 287.05047 * 12 11 10 18 18 C 1.53778 * 113.61755 * 170.87854 * 17 12 11 19 19 C 1.53955 * 87.01999 * 220.05167 * 18 17 12 20 20 C 1.53783 * 113.60995 * 73.26925 * 17 12 11 21 21 H 0.96998 * 120.00054 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46856 * 60.00114 * 9 7 2 23 23 H 1.09003 * 109.46870 * 300.00734 * 9 7 2 24 24 H 1.09005 * 109.47094 * 300.00324 * 10 9 7 25 25 H 1.08997 * 109.47230 * 60.00248 * 10 9 7 26 26 H 1.09005 * 109.46902 * 305.64867 * 11 10 9 27 27 H 1.08998 * 109.47398 * 65.64730 * 11 10 9 28 28 H 1.09008 * 112.84803 * 169.28348 * 13 12 11 29 29 H 1.08996 * 113.61302 * 334.56812 * 14 13 12 30 30 H 1.09004 * 113.61551 * 105.46859 * 14 13 12 31 31 H 1.08994 * 113.54285 * 270.80802 * 15 14 13 32 32 H 1.09001 * 113.74298 * 139.94302 * 15 14 13 33 33 H 1.09005 * 113.61422 * 254.52854 * 16 13 12 34 34 H 1.08998 * 113.61867 * 25.42977 * 16 13 12 35 35 H 1.08998 * 112.84654 * 302.07988 * 17 12 11 36 36 H 1.09003 * 113.61563 * 334.56801 * 18 17 12 37 37 H 1.08996 * 113.61156 * 105.47179 * 18 17 12 38 38 H 1.09001 * 113.53350 * 270.81021 * 19 18 17 39 39 H 1.08996 * 113.74401 * 139.94276 * 19 18 17 40 40 H 1.08998 * 113.61257 * 254.52991 * 20 17 12 41 41 H 1.08994 * 113.61773 * 25.44038 * 20 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4291 -6.1003 0.1352 13 6 1.7395 -7.3335 0.5372 14 6 0.3627 -7.5129 -0.1240 15 6 -0.1321 -8.0395 1.2354 16 6 0.9954 -7.2142 1.8776 17 6 3.1865 -6.3018 -1.1074 18 6 4.3475 -7.3001 -0.9661 19 6 5.1673 -6.3496 -1.8576 20 6 4.2486 -5.2196 -1.3637 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.8721 -3.6043 -0.8905 25 1 2.8720 -3.6043 0.8894 26 1 0.7797 -5.0025 0.8337 27 1 0.9320 -5.0897 -0.9376 28 1 2.3756 -8.2160 0.4678 29 1 -0.1029 -6.5744 -0.4246 30 1 0.3523 -8.2638 -0.9142 31 1 -0.0090 -9.1156 1.3564 32 1 -1.1314 -7.6952 1.5020 33 1 1.4951 -7.7243 2.7013 34 1 0.7030 -6.1939 2.1255 35 1 2.5452 -6.4965 -1.9670 36 1 4.7304 -7.3835 0.0511 37 1 4.1490 -8.2684 -1.4254 38 1 5.0686 -6.5586 -2.9228 39 1 6.2048 -6.2380 -1.5425 40 1 3.9703 -4.5108 -2.1436 41 1 4.6043 -4.7332 -0.4555 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429167134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:46 Heat of formation + Delta-G solvation = 14.823471 kcal Electronic energy + Delta-G solvation = -17473.550550 eV Core-core repulsion = 14967.542570 eV Total energy + Delta-G solvation = -2506.007980 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12360 -38.82558 -36.31157 -34.66616 -32.61232 -28.66399 -26.63920 -26.47477 -25.82536 -25.20971 -23.14920 -21.99190 -20.15690 -19.59575 -18.42081 -17.42700 -16.73089 -16.67934 -16.31525 -16.03899 -15.15040 -14.64519 -14.25263 -13.86309 -13.74232 -13.42023 -13.39912 -13.21020 -12.99556 -12.78151 -12.61882 -12.49715 -12.22183 -11.95306 -11.75252 -11.55798 -11.42740 -11.38017 -11.20877 -11.09626 -10.92823 -10.73249 -10.53688 -9.12031 -8.20440 -6.31330 1.38932 1.39374 1.53163 2.40492 2.99269 3.12522 3.67133 3.76594 3.80011 3.86260 3.97710 4.02842 4.07557 4.08433 4.24321 4.51353 4.62286 4.72737 4.77258 4.84154 4.84783 4.89940 4.96424 4.98798 5.03336 5.06167 5.10013 5.13565 5.19464 5.25777 5.28242 5.40683 5.49595 5.54378 5.61964 5.76986 5.86921 6.17115 6.30730 6.40066 6.85696 7.37873 8.91912 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.023441 B = 0.006111 C = 0.005063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.199991 B = 4580.630196 C = 5529.321998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.092 4.092 11 C 0.070 3.930 12 N -0.522 5.522 13 C 0.064 3.936 14 C -0.182 4.182 15 C -0.128 4.128 16 C -0.139 4.139 17 C 0.050 3.950 18 C -0.114 4.114 19 C -0.133 4.133 20 C -0.135 4.135 21 H 0.263 0.737 22 H -0.014 1.014 23 H -0.013 1.013 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.021 0.979 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.131 -17.989 -1.034 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.076 0.924 9 C -0.011 4.011 10 C -0.130 4.130 11 C -0.057 4.057 12 N -0.244 5.244 13 C -0.044 4.044 14 C -0.222 4.222 15 C -0.166 4.166 16 C -0.177 4.177 17 C -0.058 4.058 18 C -0.151 4.151 19 C -0.170 4.170 20 C -0.173 4.173 21 H 0.072 0.928 22 H 0.005 0.995 23 H 0.005 0.995 24 H 0.078 0.922 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.136 0.864 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.342 -17.762 -0.664 18.872 hybrid contribution -0.825 1.158 -0.625 1.553 sum 5.517 -16.604 -1.289 17.544 Atomic orbital electron populations 1.70110 1.07841 1.27673 1.51946 1.26001 0.95777 1.03404 0.94748 0.85392 0.79082 0.78694 0.77854 1.18588 1.20251 1.20265 1.21700 0.93444 0.92341 1.50168 0.92366 1.18978 0.94420 0.93413 0.94282 1.21559 0.97971 0.92574 1.00884 1.21995 0.94009 0.90805 0.98936 1.62241 1.26162 1.04550 1.31425 1.23310 0.92373 0.92718 0.95999 1.23650 0.99004 1.01246 0.98251 1.22717 0.98175 1.00555 0.95172 1.23095 0.97258 1.00200 0.97154 1.23206 0.93569 0.98581 0.90485 1.22903 0.94568 0.96929 1.00744 1.22771 0.98719 0.95652 0.99908 1.23064 0.96969 0.96534 1.00757 0.92793 0.99526 0.99473 0.92167 0.93544 0.91904 0.96073 0.86431 0.91707 0.90829 0.88144 0.91675 0.90156 0.91737 0.92670 0.89518 0.90241 0.89422 0.90349 0.93006 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.46 13.29 21.45 0.28 -58.18 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 3 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.09 -4.05 4.33 30.59 0.13 -3.92 16 11 C 0.07 2.59 3.51 86.30 0.30 2.89 16 12 N -0.52 -15.59 4.58 -839.78 -3.84 -19.44 16 13 C 0.06 1.57 3.72 45.44 0.17 1.74 16 14 C -0.18 -4.34 7.36 31.18 0.23 -4.11 16 15 C -0.13 -2.62 8.09 31.18 0.25 -2.37 16 16 C -0.14 -3.34 7.53 31.12 0.23 -3.11 16 17 C 0.05 1.33 3.10 45.44 0.14 1.47 16 18 C -0.11 -2.32 6.87 31.18 0.21 -2.10 16 19 C -0.13 -2.74 8.09 31.18 0.25 -2.49 16 20 C -0.14 -3.82 5.36 31.12 0.17 -3.65 16 21 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 22 H -0.01 -0.81 8.14 -2.38 -0.02 -0.83 16 23 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 24 H 0.06 2.58 5.10 -2.38 -0.01 2.57 16 25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 2.40 5.72 -2.38 -0.01 2.38 16 27 H 0.02 0.80 7.02 -2.39 -0.02 0.79 16 28 H 0.12 2.40 7.35 -2.38 -0.02 2.39 16 29 H 0.06 1.87 5.84 -2.39 -0.01 1.85 16 30 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.06 1.88 6.23 -2.39 -0.01 1.87 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.59 7.41 -2.39 -0.02 1.58 16 41 H 0.08 2.41 7.61 -2.39 -0.02 2.39 16 Total: -1.00 -64.90 312.24 2.37 -62.52 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.97 Total: 12.95 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 2.94 Total: -45.29 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -3.56 Total: -77.62 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -64.90 2.37 -62.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429167134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.348 kcal (2) G-P(sol) polarization free energy of solvation -64.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds