Wall clock time and date at job start Sun Mar 29 2020 22:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29824 * 118.35812 * 2 1 4 4 C 1.50309 * 122.89376 * 180.34667 * 3 2 1 5 5 C 1.53083 * 109.71809 * 343.50841 * 4 3 2 6 6 N 1.47246 * 108.47098 * 48.95792 * 5 4 3 7 7 C 1.46896 * 110.99856 * 167.80334 * 6 5 4 8 8 C 1.53006 * 109.47133 * 209.26245 * 7 6 5 9 9 C 1.53004 * 109.46730 * 180.65638 * 8 7 6 10 10 C 1.52995 * 109.46982 * 300.65746 * 8 7 6 11 11 C 1.53003 * 109.46978 * 60.66187 * 8 7 6 12 12 C 1.50696 * 109.46791 * 179.97438 * 11 8 7 13 13 H 1.08001 * 120.00240 * 359.97438 * 12 11 8 14 14 C 1.37878 * 119.99947 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00296 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99824 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47039 * 89.99766 * 16 14 12 18 18 H 1.48497 * 109.47157 * 210.00095 * 16 14 12 19 19 H 1.48506 * 109.47003 * 330.00050 * 16 14 12 20 20 C 1.46833 * 110.20747 * 291.19687 * 6 5 4 21 21 H 1.08994 * 109.46917 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46822 * 119.99872 * 1 2 3 23 23 H 1.09000 * 109.46997 * 239.99531 * 1 2 3 24 24 H 1.08005 * 118.55161 * 0.07382 * 3 2 1 25 25 H 1.09001 * 109.42894 * 103.58522 * 4 3 2 26 26 H 1.09004 * 109.43058 * 223.43300 * 4 3 2 27 27 H 1.08997 * 109.63721 * 289.27010 * 5 4 3 28 28 H 1.08997 * 109.63894 * 168.65203 * 5 4 3 29 29 H 1.08999 * 109.47779 * 329.26797 * 7 6 5 30 30 H 1.09006 * 109.47093 * 89.26328 * 7 6 5 31 31 H 1.09002 * 109.47351 * 61.32256 * 9 8 7 32 32 H 1.09000 * 109.46882 * 181.31784 * 9 8 7 33 33 H 1.08998 * 109.47642 * 301.31813 * 9 8 7 34 34 H 1.08993 * 109.47141 * 70.61876 * 10 8 7 35 35 H 1.09001 * 109.46861 * 190.62084 * 10 8 7 36 36 H 1.08996 * 109.47140 * 310.61512 * 10 8 7 37 37 H 1.09003 * 109.46546 * 299.99625 * 11 8 7 38 38 H 1.08996 * 109.47447 * 59.99674 * 11 8 7 39 39 H 0.96999 * 119.99922 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.33626 * 290.67687 * 20 6 5 41 41 H 1.09001 * 109.33837 * 171.17278 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1237 1.1424 0.0000 4 6 3.6220 1.2613 -0.0076 5 6 4.2483 -0.0765 0.3943 6 7 3.6209 -1.1436 -0.4030 7 6 4.3682 -2.4021 -0.2789 8 6 4.2041 -3.2213 -1.5607 9 6 4.9691 -4.5394 -1.4250 10 6 2.7204 -3.5142 -1.7923 11 6 4.7589 -2.4294 -2.7465 12 6 4.5978 -3.2365 -4.0089 13 1 4.1455 -4.2164 -3.9693 14 6 5.0280 -2.7240 -5.2144 15 7 4.8871 -3.4281 -6.3162 16 14 5.8099 -1.0288 -5.2829 17 1 7.2777 -1.1527 -5.0948 18 1 5.5306 -0.4078 -6.6026 19 1 5.2428 -0.1783 -4.2056 20 6 2.2202 -1.3212 0.0004 21 1 -0.3633 1.0276 0.0005 22 1 -0.3633 -0.5138 -0.8900 23 1 -0.3633 -0.5139 0.8899 24 1 1.5340 2.0473 0.0012 25 1 3.9591 1.5336 -1.0078 26 1 3.9283 2.0321 0.6997 27 1 4.0723 -0.2596 1.4542 28 1 5.3200 -0.0534 0.1964 29 1 5.4242 -2.1836 -0.1200 30 1 3.9836 -2.9711 0.5677 31 1 4.5585 -5.1140 -0.5947 32 1 4.8716 -5.1126 -2.3469 33 1 6.0222 -4.3306 -1.2366 34 1 2.2084 -2.5946 -2.0752 35 1 2.6155 -4.2489 -2.5906 36 1 2.2805 -3.9079 -0.8761 37 1 4.2139 -1.4904 -2.8431 38 1 5.8159 -2.2207 -2.5815 39 1 5.1901 -3.0676 -7.1642 40 1 2.1847 -1.7502 1.0018 41 1 1.7267 -1.9980 -0.6972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437342060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:56 Heat of formation + Delta-G solvation = 7.495592 kcal Electronic energy + Delta-G solvation = -17966.799312 eV Core-core repulsion = 15460.473572 eV Total energy + Delta-G solvation = -2506.325741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.30944 -36.59264 -33.56824 -32.20942 -31.32132 -27.71023 -27.43844 -26.18001 -25.97456 -23.13187 -22.34929 -21.52896 -17.92146 -17.24561 -16.66181 -15.69547 -15.08451 -14.74855 -14.22211 -13.81049 -13.48281 -13.40682 -13.23180 -12.55576 -12.46119 -12.29345 -12.16840 -11.99388 -11.76720 -11.37758 -11.16302 -11.04368 -11.00894 -10.82795 -10.35524 -10.33134 -9.97112 -9.68422 -9.51995 -9.22899 -8.75536 -8.57153 -8.37790 -7.86393 -5.89239 -3.83645 2.37421 3.41458 3.48852 3.57675 4.19528 4.60330 4.82843 4.97178 5.29184 5.40634 5.45677 5.49981 5.53416 5.57918 5.60190 5.72469 5.79230 5.83837 5.90403 5.97282 6.01975 6.11746 6.16502 6.21607 6.27179 6.40676 6.46000 6.63601 6.72663 6.80549 7.07270 7.13057 7.20348 7.27509 7.42495 7.53299 7.54276 7.79856 8.00518 8.71862 9.17401 9.75685 11.24209 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.008113 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.412911 B = 3450.440991 C = 3823.881637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.127 4.127 3 C -0.156 4.156 4 C -0.084 4.084 5 C 0.052 3.948 6 N -0.520 5.520 7 C 0.065 3.935 8 C -0.045 4.045 9 C -0.131 4.131 10 C -0.127 4.127 11 C 0.006 3.994 12 C -0.506 4.506 13 H 0.073 0.927 14 C 0.063 3.937 15 N -0.911 5.911 16 Si 0.874 3.126 17 H -0.282 1.282 18 H -0.292 1.292 19 H -0.261 1.261 20 C 0.075 3.925 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.100 0.900 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.026 0.974 37 H 0.032 0.968 38 H 0.001 0.999 39 H 0.259 0.741 40 H 0.035 0.965 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.916 6.518 15.137 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.127 4.127 3 C -0.174 4.174 4 C -0.122 4.122 5 C -0.076 4.076 6 N -0.243 5.243 7 C -0.063 4.063 8 C -0.046 4.046 9 C -0.188 4.188 10 C -0.184 4.184 11 C -0.031 4.031 12 C -0.544 4.544 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.551 5.551 16 Si 0.702 3.298 17 H -0.208 1.208 18 H -0.219 1.219 19 H -0.185 1.185 20 C -0.052 4.052 21 H 0.077 0.923 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.118 0.882 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.051 0.949 38 H 0.020 0.980 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.872 6.668 14.457 16.650 hybrid contribution 0.472 0.708 0.610 1.047 sum -4.400 7.377 15.067 17.343 Atomic orbital electron populations 1.20866 0.92396 1.02025 1.02024 1.21043 0.95546 0.95035 1.01126 1.21995 0.96052 0.96803 1.02542 1.20493 0.92897 0.96659 1.02117 1.22216 0.98836 0.91996 0.94589 1.62268 1.01310 1.06713 1.54036 1.22377 0.97108 0.89284 0.97511 1.20377 0.95536 0.94242 0.94411 1.21781 0.98851 0.97094 1.01101 1.21916 0.95747 1.01509 0.99194 1.19522 0.94768 0.96278 0.92571 1.21268 1.38924 1.03830 0.90336 0.90853 1.24999 0.95815 0.97050 0.95799 1.69921 1.48732 1.37858 0.98606 0.86859 0.79752 0.85971 0.77257 1.20789 1.21878 1.18534 1.21382 0.89412 0.95217 0.99206 0.92288 0.91397 0.92108 0.88166 0.90172 0.91434 0.95337 0.90684 0.91754 0.95392 0.95126 0.91009 0.93855 0.92104 0.92205 0.95528 0.94931 0.98050 0.93113 0.94746 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 10.01 36.01 0.36 -0.92 16 2 C -0.13 -1.74 5.91 -101.00 -0.60 -2.33 16 3 C -0.16 -2.07 9.53 -35.88 -0.34 -2.41 16 4 C -0.08 -1.12 6.32 -28.03 -0.18 -1.29 16 5 C 0.05 0.74 5.54 -3.59 -0.02 0.72 16 6 N -0.52 -8.59 3.73 -236.12 -0.88 -9.47 16 7 C 0.06 1.08 4.22 -3.82 -0.02 1.07 16 8 C -0.05 -0.88 0.60 -154.50 -0.09 -0.98 16 9 C -0.13 -2.45 8.22 37.16 0.31 -2.15 16 10 C -0.13 -2.40 6.37 37.15 0.24 -2.16 16 11 C 0.01 0.14 2.94 -27.88 -0.08 0.06 16 12 C -0.51 -14.24 8.29 -34.44 -0.29 -14.53 16 13 H 0.07 2.20 5.98 -52.49 -0.31 1.88 16 14 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 15 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 16 Si 0.87 22.49 27.47 -169.99 -4.67 17.82 16 17 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 19 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 20 C 0.07 1.11 4.70 -5.28 -0.02 1.09 16 21 H 0.06 0.58 7.61 -51.93 -0.40 0.19 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.10 1.16 7.63 -52.48 -0.40 0.76 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.07 1.04 7.75 -51.93 -0.40 0.64 16 29 H 0.06 1.05 7.55 -51.93 -0.39 0.66 16 30 H 0.03 0.43 7.68 -51.93 -0.40 0.03 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.51 6.57 -51.93 -0.34 1.17 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.19 6.10 -51.93 -0.32 0.87 16 35 H 0.06 1.24 6.98 -51.93 -0.36 0.88 16 36 H 0.03 0.42 7.70 -51.93 -0.40 0.02 16 37 H 0.03 0.83 6.68 -51.93 -0.35 0.48 16 38 H 0.00 0.03 7.57 -51.93 -0.39 -0.36 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.03 0.48 7.90 -51.93 -0.41 0.07 16 41 H 0.11 1.65 4.26 -51.93 -0.22 1.43 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -30.69 307.21 -8.20 -38.89 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -7.22 Total: -2.04 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -0.83 Total: -22.07 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.11 Total: -37.22 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.69 -8.20 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437342060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.383 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds