Wall clock time and date at job start Sun Mar 29 2020 22:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29824 * 118.35812 * 2 1 4 4 C 1.50309 * 122.89376 * 180.34667 * 3 2 1 5 5 C 1.53083 * 109.71809 * 343.50841 * 4 3 2 6 6 N 1.47246 * 108.47098 * 48.95792 * 5 4 3 7 7 C 1.46896 * 110.99856 * 167.80334 * 6 5 4 8 8 C 1.53006 * 109.47133 * 209.26245 * 7 6 5 9 9 C 1.53004 * 109.46730 * 180.65638 * 8 7 6 10 10 C 1.52995 * 109.46982 * 300.65746 * 8 7 6 11 11 C 1.53003 * 109.46978 * 60.66187 * 8 7 6 12 12 C 1.50696 * 109.46791 * 179.97438 * 11 8 7 13 13 H 1.08001 * 120.00240 * 359.97438 * 12 11 8 14 14 C 1.37878 * 119.99947 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00296 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99824 * 359.97438 * 14 12 11 17 17 H 1.48505 * 109.47039 * 89.99766 * 16 14 12 18 18 H 1.48497 * 109.47157 * 210.00095 * 16 14 12 19 19 H 1.48506 * 109.47003 * 330.00050 * 16 14 12 20 20 C 1.46833 * 110.20747 * 291.19687 * 6 5 4 21 21 H 1.08994 * 109.46917 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46822 * 119.99872 * 1 2 3 23 23 H 1.09000 * 109.46997 * 239.99531 * 1 2 3 24 24 H 1.08005 * 118.55161 * 0.07382 * 3 2 1 25 25 H 1.09001 * 109.42894 * 103.58522 * 4 3 2 26 26 H 1.09004 * 109.43058 * 223.43300 * 4 3 2 27 27 H 1.08997 * 109.63721 * 289.27010 * 5 4 3 28 28 H 1.08997 * 109.63894 * 168.65203 * 5 4 3 29 29 H 1.08999 * 109.47779 * 329.26797 * 7 6 5 30 30 H 1.09006 * 109.47093 * 89.26328 * 7 6 5 31 31 H 1.09002 * 109.47351 * 61.32256 * 9 8 7 32 32 H 1.09000 * 109.46882 * 181.31784 * 9 8 7 33 33 H 1.08998 * 109.47642 * 301.31813 * 9 8 7 34 34 H 1.08993 * 109.47141 * 70.61876 * 10 8 7 35 35 H 1.09001 * 109.46861 * 190.62084 * 10 8 7 36 36 H 1.08996 * 109.47140 * 310.61512 * 10 8 7 37 37 H 1.09003 * 109.46546 * 299.99625 * 11 8 7 38 38 H 1.08996 * 109.47447 * 59.99674 * 11 8 7 39 39 H 0.96999 * 119.99922 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.33626 * 290.67687 * 20 6 5 41 41 H 1.09001 * 109.33837 * 171.17278 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1237 1.1424 0.0000 4 6 3.6220 1.2613 -0.0076 5 6 4.2483 -0.0765 0.3943 6 7 3.6209 -1.1436 -0.4030 7 6 4.3682 -2.4021 -0.2789 8 6 4.2041 -3.2213 -1.5607 9 6 4.9691 -4.5394 -1.4250 10 6 2.7204 -3.5142 -1.7923 11 6 4.7589 -2.4294 -2.7465 12 6 4.5978 -3.2365 -4.0089 13 1 4.1455 -4.2164 -3.9693 14 6 5.0280 -2.7240 -5.2144 15 7 4.8871 -3.4281 -6.3162 16 14 5.8099 -1.0288 -5.2829 17 1 7.2777 -1.1527 -5.0948 18 1 5.5306 -0.4078 -6.6026 19 1 5.2428 -0.1783 -4.2056 20 6 2.2202 -1.3212 0.0004 21 1 -0.3633 1.0276 0.0005 22 1 -0.3633 -0.5138 -0.8900 23 1 -0.3633 -0.5139 0.8899 24 1 1.5340 2.0473 0.0012 25 1 3.9591 1.5336 -1.0078 26 1 3.9283 2.0321 0.6997 27 1 4.0723 -0.2596 1.4542 28 1 5.3200 -0.0534 0.1964 29 1 5.4242 -2.1836 -0.1200 30 1 3.9836 -2.9711 0.5677 31 1 4.5585 -5.1140 -0.5947 32 1 4.8716 -5.1126 -2.3469 33 1 6.0222 -4.3306 -1.2366 34 1 2.2084 -2.5946 -2.0752 35 1 2.6155 -4.2489 -2.5906 36 1 2.2805 -3.9079 -0.8761 37 1 4.2139 -1.4904 -2.8431 38 1 5.8159 -2.2207 -2.5815 39 1 5.1901 -3.0676 -7.1642 40 1 2.1847 -1.7502 1.0018 41 1 1.7267 -1.9980 -0.6972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437342060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:56 Heat of formation + Delta-G solvation = -10.313082 kcal Electronic energy + Delta-G solvation = -17967.571554 eV Core-core repulsion = 15460.473572 eV Total energy + Delta-G solvation = -2507.097983 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50983 -38.02802 -34.94998 -34.10809 -32.50536 -29.72405 -28.67969 -27.51650 -27.14023 -24.58188 -24.00360 -22.70498 -19.50903 -18.82646 -18.31477 -16.90966 -16.37046 -16.14769 -15.85851 -15.23268 -14.98218 -14.68576 -14.42711 -14.24610 -13.95765 -13.59707 -13.46480 -13.20652 -12.93766 -12.78805 -12.76614 -12.57591 -12.55666 -12.28202 -12.09790 -11.69385 -11.54775 -11.38702 -11.15961 -10.94705 -10.68755 -10.64460 -9.58555 -9.05754 -8.18398 -6.16387 1.35503 1.37827 1.38645 1.52505 2.43082 3.04418 3.18001 3.83847 3.92210 4.15878 4.24099 4.30274 4.37401 4.45513 4.53467 4.59527 4.60991 4.73208 4.79060 4.85477 4.87037 4.90307 4.96476 4.97675 5.10836 5.14130 5.17819 5.18969 5.25500 5.42021 5.51307 5.59580 5.63411 5.70277 5.84607 5.90500 6.11007 6.28111 6.38494 6.47178 6.91349 7.46050 8.98073 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022369 B = 0.008113 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.412911 B = 3450.440991 C = 3823.881637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.142 4.142 3 C -0.162 4.162 4 C -0.085 4.085 5 C 0.051 3.949 6 N -0.546 5.546 7 C 0.074 3.926 8 C -0.047 4.047 9 C -0.126 4.126 10 C -0.117 4.117 11 C 0.016 3.984 12 C -0.500 4.500 13 H 0.042 0.958 14 C 0.000 4.000 15 N -0.957 5.957 16 Si 0.938 3.062 17 H -0.272 1.272 18 H -0.291 1.291 19 H -0.251 1.251 20 C 0.074 3.926 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.117 0.883 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.028 0.972 36 H 0.058 0.942 37 H 0.021 0.979 38 H -0.001 1.001 39 H 0.260 0.740 40 H 0.046 0.954 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.964 8.071 17.565 19.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.142 4.142 3 C -0.181 4.181 4 C -0.123 4.123 5 C -0.076 4.076 6 N -0.269 5.269 7 C -0.054 4.054 8 C -0.048 4.048 9 C -0.184 4.184 10 C -0.174 4.174 11 C -0.022 4.022 12 C -0.539 4.539 13 H 0.060 0.940 14 C -0.195 4.195 15 N -0.600 5.600 16 Si 0.764 3.236 17 H -0.198 1.198 18 H -0.217 1.217 19 H -0.174 1.174 20 C -0.052 4.052 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.135 0.865 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.039 0.961 38 H 0.017 0.983 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.923 8.225 16.907 19.436 hybrid contribution 0.447 0.157 -0.136 0.493 sum -4.476 8.382 16.771 19.276 Atomic orbital electron populations 1.20869 0.90800 1.02976 1.02370 1.21255 0.96854 0.94615 1.01524 1.22219 0.96262 0.97426 1.02154 1.20530 0.92991 0.96932 1.01807 1.22265 0.98743 0.91614 0.95025 1.62193 1.02229 1.06998 1.55527 1.22187 0.97740 0.89468 0.96013 1.20363 0.95527 0.94552 0.94355 1.21701 0.99417 0.96660 1.00605 1.21814 0.95689 1.00273 0.99621 1.19388 0.94564 0.95640 0.92587 1.21593 1.37176 1.02951 0.92150 0.93979 1.25873 0.96911 1.01121 0.95567 1.70069 1.50687 1.39955 0.99305 0.85821 0.79145 0.81241 0.77412 1.19785 1.21725 1.17446 1.21356 0.88600 0.95916 0.99363 0.91073 0.91993 0.90773 0.86546 0.91939 0.88901 0.93968 0.90693 0.91301 0.93206 0.91954 0.94422 0.93304 0.93019 0.95253 0.92302 0.96057 0.98310 0.93107 0.93575 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 10.01 71.24 0.71 -1.52 16 2 C -0.14 -3.55 5.91 -15.45 -0.09 -3.64 16 3 C -0.16 -3.90 9.53 26.74 0.25 -3.64 16 4 C -0.09 -2.04 6.32 29.75 0.19 -1.85 16 5 C 0.05 1.31 5.54 86.26 0.48 1.79 16 6 N -0.55 -16.78 3.73 -900.94 -3.36 -20.15 16 7 C 0.07 2.27 4.22 86.31 0.36 2.63 16 8 C -0.05 -1.81 0.60 -52.18 -0.03 -1.84 16 9 C -0.13 -4.61 8.22 71.98 0.59 -4.02 16 10 C -0.12 -4.37 6.37 71.98 0.46 -3.91 16 11 C 0.02 0.75 2.94 29.85 0.09 0.84 16 12 C -0.50 -28.90 8.29 25.60 0.21 -28.69 16 13 H 0.04 2.64 5.98 -2.91 -0.02 2.63 16 14 C 0.00 0.02 5.47 84.66 0.46 0.48 16 15 N -0.96 -61.69 13.96 21.45 0.30 -61.39 16 16 Si 0.94 46.79 27.47 68.60 1.88 48.67 16 17 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 18 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 19 H -0.25 -11.97 6.54 99.48 0.65 -11.32 16 20 C 0.07 2.04 4.70 85.40 0.40 2.44 16 21 H 0.07 1.21 7.61 -2.39 -0.02 1.19 16 22 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.12 2.36 7.63 -2.91 -0.02 2.34 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 27 H 0.04 0.97 8.08 -2.39 -0.02 0.95 16 28 H 0.07 1.89 7.75 -2.39 -0.02 1.87 16 29 H 0.07 2.06 7.55 -2.39 -0.02 2.04 16 30 H 0.05 1.34 7.68 -2.38 -0.02 1.32 16 31 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.61 6.57 -2.39 -0.02 1.59 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 2.01 6.10 -2.39 -0.01 1.99 16 35 H 0.03 1.23 6.98 -2.39 -0.02 1.22 16 36 H 0.06 1.78 7.70 -2.39 -0.02 1.76 16 37 H 0.02 1.06 6.68 -2.39 -0.02 1.05 16 38 H 0.00 -0.07 7.57 -2.39 -0.02 -0.09 16 39 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 40 H 0.05 1.14 7.90 -2.39 -0.02 1.13 16 41 H 0.09 2.76 4.26 -2.39 -0.01 2.75 16 Total: -1.00 -66.76 307.21 3.83 -62.93 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.92 Total: 10.86 kcal Atomic # 6 Polarization: -45.02 SS G_CDS: 4.09 Total: -40.93 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -3.07 Total: -81.54 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.88 Total: 48.67 kcal Total: -66.76 3.83 -62.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437342060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.619 kcal (2) G-P(sol) polarization free energy of solvation -66.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds