Wall clock time and date at job start Sun Mar 29 2020 22:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.07698 * 34.29657 * 13 12 11 15 15 C 1.54464 * 110.09204 * 272.75148 * 13 12 11 16 16 C 1.55050 * 104.18482 * 217.30593 * 15 13 12 17 17 C 1.55058 * 102.88906 * 37.49188 * 16 15 13 18 18 C 1.53173 * 110.09413 * 155.84520 * 13 12 11 19 19 C 1.53016 * 115.36638 * 349.56125 * 18 13 12 20 20 C 1.53923 * 86.85415 * 217.84603 * 19 18 13 21 21 C 1.53031 * 115.34097 * 249.25305 * 18 13 12 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 29 29 H 1.00899 * 111.00283 * 56.04461 * 12 11 10 30 30 H 1.09002 * 110.48185 * 335.95580 * 15 13 12 31 31 H 1.09006 * 110.48161 * 98.58055 * 15 13 12 32 32 H 1.08997 * 110.69115 * 279.15514 * 16 15 13 33 33 H 1.09000 * 110.74537 * 155.85740 * 16 15 13 34 34 H 1.09005 * 110.52714 * 204.10223 * 17 16 15 35 35 H 1.09005 * 110.64621 * 81.41893 * 17 16 15 36 36 H 1.09004 * 113.65255 * 332.33424 * 19 18 13 37 37 H 1.09000 * 113.65249 * 103.35517 * 19 18 13 38 38 H 1.09003 * 113.58769 * 270.27798 * 20 19 18 39 39 H 1.09001 * 113.59497 * 139.45105 * 20 19 18 40 40 H 1.09001 * 113.64803 * 256.66677 * 21 18 13 41 41 H 1.09004 * 113.65082 * 27.60182 * 21 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 7 6.0413 -4.0214 0.0040 13 6 7.5099 -4.0605 0.0046 14 1 7.9062 -3.2249 0.5814 15 6 8.0427 -4.0054 -1.4442 16 6 9.2714 -4.9510 -1.4334 17 6 8.8164 -6.0986 -0.4951 18 6 8.0007 -5.3865 0.5937 19 6 6.9255 -6.2435 1.2652 20 6 7.9912 -6.6078 2.3143 21 6 8.6883 -5.2829 1.9569 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.9157 -2.1230 -0.8865 28 1 5.9143 -2.1221 0.8934 29 1 5.6665 -4.5378 -0.7776 30 1 7.2883 -4.3685 -2.1421 31 1 8.3441 -2.9898 -1.7013 32 1 10.1451 -4.4427 -1.0256 33 1 9.4761 -5.3295 -2.4348 34 1 9.6799 -6.6008 -0.0588 35 1 8.1931 -6.8119 -1.0346 36 1 6.0943 -5.6652 1.6688 37 1 6.6000 -7.0898 0.6603 38 1 8.5744 -7.4914 2.0549 39 1 7.6073 -6.6376 3.3340 40 1 9.7744 -5.3601 1.9058 41 1 8.3513 -4.4351 2.5534 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449133826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:19 Heat of formation + Delta-G solvation = -6.215693 kcal Electronic energy + Delta-G solvation = -17068.616166 eV Core-core repulsion = 14561.695859 eV Total energy + Delta-G solvation = -2506.920307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34186 -36.29081 -34.63527 -33.02590 -31.21223 -27.82533 -26.98711 -25.78020 -25.11497 -22.08291 -21.71830 -20.71667 -19.99635 -17.98520 -16.72738 -15.94947 -15.63041 -14.96843 -14.86347 -14.24255 -13.83397 -13.52063 -13.31763 -13.12174 -12.64928 -12.34901 -12.01706 -11.93201 -11.60492 -11.48515 -11.16538 -10.97393 -10.90099 -10.78790 -10.72009 -10.30854 -10.11358 -10.03297 -9.91370 -9.69046 -9.48887 -9.13536 -8.50724 -8.08416 -6.01150 -3.98650 3.32283 3.39615 3.43778 4.24509 4.40826 4.47902 4.48347 4.76786 4.85408 4.94896 5.10711 5.15546 5.32817 5.37432 5.45727 5.50727 5.60586 5.69633 5.75278 5.76576 5.83939 5.86430 5.87095 5.93203 6.01157 6.07899 6.16164 6.22425 6.23024 6.44160 6.60751 6.62421 6.67465 6.95706 7.31239 7.41367 7.48317 7.66290 7.83965 8.58484 9.04617 9.61710 11.12520 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.038262 B = 0.004489 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.619697 B = 6236.101945 C = 6523.038598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.057 3.943 12 N -0.679 5.679 13 C 0.095 3.905 14 H 0.077 0.923 15 C -0.154 4.154 16 C -0.121 4.121 17 C -0.102 4.102 18 C -0.079 4.079 19 C -0.112 4.112 20 C -0.146 4.146 21 C -0.125 4.125 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.008 0.992 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.339 0.661 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.075 -11.508 0.039 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.072 4.072 12 N -0.308 5.308 13 C -0.015 4.015 14 H 0.095 0.905 15 C -0.193 4.193 16 C -0.159 4.159 17 C -0.139 4.139 18 C -0.079 4.079 19 C -0.149 4.149 20 C -0.184 4.184 21 C -0.163 4.163 22 H 0.072 0.928 23 H 0.033 0.967 24 H 0.026 0.974 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.845 -11.443 0.735 22.919 hybrid contribution 0.566 1.290 -1.019 1.738 sum 20.410 -10.153 -0.283 22.798 Atomic orbital electron populations 1.69920 1.06297 1.26804 1.51433 1.25041 0.94723 0.99151 0.94663 0.86770 0.80368 0.83668 0.78416 1.20393 1.21410 1.19057 1.21162 0.89567 0.94437 1.50433 0.91045 1.19540 0.97113 0.92403 0.96031 1.21436 0.91273 0.99525 1.01467 1.22160 0.97430 0.87974 0.99617 1.60605 1.06050 1.14489 1.49671 1.22055 0.88322 0.97044 0.94123 0.90497 1.23189 0.98236 0.99629 0.98294 1.22449 0.97651 0.96531 0.99236 1.22126 0.98901 0.97088 0.95809 1.21947 0.96820 0.95384 0.93782 1.22744 0.96947 0.98412 0.96817 1.22895 0.98816 0.97123 0.99558 1.22859 0.98847 0.98215 0.96360 0.92801 0.96692 0.97359 0.93142 0.92008 0.95952 0.91719 0.84271 0.91515 0.91932 0.91693 0.91895 0.91842 0.91433 0.87930 0.92431 0.90999 0.91877 0.92126 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.40 13.96 55.43 0.77 -27.63 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C -0.01 -0.31 4.04 -27.89 -0.11 -0.43 16 10 C -0.10 -1.99 5.41 -26.73 -0.14 -2.13 16 11 C 0.06 0.93 5.51 -3.82 -0.02 0.91 16 12 N -0.68 -9.35 4.61 -105.82 -0.49 -9.84 16 13 C 0.10 1.13 2.97 -66.85 -0.20 0.93 16 14 H 0.08 0.98 7.59 -51.93 -0.39 0.58 16 15 C -0.15 -1.66 6.46 -24.88 -0.16 -1.82 16 16 C -0.12 -1.10 6.91 -24.56 -0.17 -1.27 16 17 C -0.10 -0.94 6.00 -25.36 -0.15 -1.09 16 18 C -0.08 -0.83 1.13 -154.11 -0.17 -1.00 16 19 C -0.11 -1.24 6.73 -26.24 -0.18 -1.41 16 20 C -0.15 -1.43 7.91 -25.78 -0.20 -1.63 16 21 C -0.13 -1.26 7.14 -26.24 -0.19 -1.45 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 23 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 24 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 28 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 29 H 0.34 4.54 8.12 -39.29 -0.32 4.22 16 30 H 0.07 0.74 7.57 -51.93 -0.39 0.34 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 35 H 0.07 0.62 8.02 -51.93 -0.42 0.21 16 36 H 0.10 1.34 7.22 -51.93 -0.37 0.96 16 37 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.55 8.03 -51.93 -0.42 0.13 16 41 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -29.90 316.98 -9.45 -39.35 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.72 Total: -0.12 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -2.13 Total: -23.98 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.29 Total: -37.47 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.90 -9.45 -39.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449133826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.139 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds