Wall clock time and date at job start Sun Mar 29 2020 22:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99793 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.07698 * 34.29657 * 13 12 11 15 15 C 1.54464 * 110.09204 * 272.75148 * 13 12 11 16 16 C 1.55050 * 104.18482 * 217.30593 * 15 13 12 17 17 C 1.55058 * 102.88906 * 37.49188 * 16 15 13 18 18 C 1.53173 * 110.09413 * 155.84520 * 13 12 11 19 19 C 1.53016 * 115.36638 * 349.56125 * 18 13 12 20 20 C 1.53923 * 86.85415 * 217.84603 * 19 18 13 21 21 C 1.53031 * 115.34097 * 249.25305 * 18 13 12 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 28 28 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 29 29 H 1.00899 * 111.00283 * 56.04461 * 12 11 10 30 30 H 1.09002 * 110.48185 * 335.95580 * 15 13 12 31 31 H 1.09006 * 110.48161 * 98.58055 * 15 13 12 32 32 H 1.08997 * 110.69115 * 279.15514 * 16 15 13 33 33 H 1.09000 * 110.74537 * 155.85740 * 16 15 13 34 34 H 1.09005 * 110.52714 * 204.10223 * 17 16 15 35 35 H 1.09005 * 110.64621 * 81.41893 * 17 16 15 36 36 H 1.09004 * 113.65255 * 332.33424 * 19 18 13 37 37 H 1.09000 * 113.65249 * 103.35517 * 19 18 13 38 38 H 1.09003 * 113.58769 * 270.27798 * 20 19 18 39 39 H 1.09001 * 113.59497 * 139.45105 * 20 19 18 40 40 H 1.09001 * 113.64803 * 256.66677 * 21 18 13 41 41 H 1.09004 * 113.65082 * 27.60182 * 21 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 7 6.0413 -4.0214 0.0040 13 6 7.5099 -4.0605 0.0046 14 1 7.9062 -3.2249 0.5814 15 6 8.0427 -4.0054 -1.4442 16 6 9.2714 -4.9510 -1.4334 17 6 8.8164 -6.0986 -0.4951 18 6 8.0007 -5.3865 0.5937 19 6 6.9255 -6.2435 1.2652 20 6 7.9912 -6.6078 2.3143 21 6 8.6883 -5.2829 1.9569 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.9157 -2.1230 -0.8865 28 1 5.9143 -2.1221 0.8934 29 1 5.6665 -4.5378 -0.7776 30 1 7.2883 -4.3685 -2.1421 31 1 8.3441 -2.9898 -1.7013 32 1 10.1451 -4.4427 -1.0256 33 1 9.4761 -5.3295 -2.4348 34 1 9.6799 -6.6008 -0.0588 35 1 8.1931 -6.8119 -1.0346 36 1 6.0943 -5.6652 1.6688 37 1 6.6000 -7.0898 0.6603 38 1 8.5744 -7.4914 2.0549 39 1 7.6073 -6.6376 3.3340 40 1 9.7744 -5.3601 1.9058 41 1 8.3513 -4.4351 2.5534 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449133826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:18 Heat of formation + Delta-G solvation = -22.831259 kcal Electronic energy + Delta-G solvation = -17069.336671 eV Core-core repulsion = 14561.695859 eV Total energy + Delta-G solvation = -2507.640812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.19343 -37.50380 -35.89642 -34.76112 -32.96775 -29.25705 -27.86842 -26.79110 -26.34406 -23.73238 -22.50578 -21.96299 -21.37722 -18.98519 -18.76760 -16.95728 -16.58636 -16.39810 -16.08667 -15.74900 -15.10820 -14.77667 -14.44044 -14.38591 -13.93225 -13.76042 -13.51780 -13.04531 -12.83749 -12.63786 -12.51129 -12.41680 -11.92164 -11.83324 -11.75883 -11.54977 -11.52565 -11.47064 -11.30893 -11.05786 -10.87844 -10.81150 -10.76903 -9.18768 -8.29957 -6.34264 1.34806 1.37221 1.49506 2.35876 3.05241 3.19948 3.59157 3.68329 3.87702 4.06103 4.13755 4.20782 4.28542 4.35775 4.40224 4.53623 4.63855 4.68714 4.76061 4.84017 4.89427 4.94980 4.97916 5.03076 5.07711 5.08726 5.11514 5.17828 5.19336 5.27885 5.35490 5.43684 5.52642 5.61202 5.61936 5.66258 5.79778 6.20875 6.30566 6.54589 6.74058 7.30412 8.87188 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.038262 B = 0.004489 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.619697 B = 6236.101945 C = 6523.038598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.534 4.534 8 H 0.029 0.971 9 C -0.010 4.010 10 C -0.089 4.089 11 C 0.072 3.928 12 N -0.681 5.681 13 C 0.093 3.907 14 H 0.069 0.931 15 C -0.154 4.154 16 C -0.115 4.115 17 C -0.098 4.098 18 C -0.077 4.077 19 C -0.117 4.117 20 C -0.140 4.140 21 C -0.124 4.124 22 H 0.266 0.734 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.028 0.972 28 H 0.064 0.936 29 H 0.341 0.659 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.965 -11.277 -0.269 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.194 4.194 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.128 4.128 11 C -0.057 4.057 12 N -0.310 5.310 13 C -0.017 4.017 14 H 0.088 0.912 15 C -0.193 4.193 16 C -0.153 4.153 17 C -0.135 4.135 18 C -0.077 4.077 19 C -0.155 4.155 20 C -0.177 4.177 21 C -0.162 4.162 22 H 0.075 0.925 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.160 0.840 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.755 -11.236 0.426 25.381 hybrid contribution -0.422 1.125 -0.912 1.509 sum 22.333 -10.110 -0.486 24.520 Atomic orbital electron populations 1.70078 1.08367 1.28194 1.52752 1.26065 0.95649 1.03663 0.94059 0.85604 0.79445 0.78007 0.79251 1.19035 1.20861 1.17048 1.21520 0.92275 0.93053 1.50346 0.95271 1.19486 0.93786 0.95149 0.96358 1.21255 0.94137 0.96754 1.00612 1.21864 0.94366 0.89609 0.99852 1.60554 1.07636 1.12845 1.49993 1.22127 0.86767 0.97710 0.95127 0.91232 1.23153 0.98952 1.00074 0.97099 1.22435 0.96947 0.95980 0.99932 1.22116 0.99104 0.97047 0.95259 1.21973 0.96768 0.94571 0.94410 1.22683 0.96768 0.98410 0.97621 1.22884 0.98197 0.97599 0.99021 1.22838 0.99674 0.97913 0.95738 0.92477 0.96322 0.96409 0.93581 0.93390 0.95369 0.91761 0.83995 0.91903 0.92119 0.91008 0.90782 0.90471 0.91395 0.90328 0.92262 0.89488 0.92058 0.90691 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 2 C 0.00 0.12 5.47 84.65 0.46 0.59 16 3 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 7 C -0.53 -31.85 9.66 25.60 0.25 -31.60 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 9 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 10 C -0.09 -3.60 5.41 30.59 0.17 -3.43 16 11 C 0.07 2.29 5.51 86.30 0.48 2.76 16 12 N -0.68 -18.22 4.61 -488.70 -2.26 -20.48 16 13 C 0.09 2.07 2.97 45.47 0.13 2.20 16 14 H 0.07 1.66 7.59 -2.39 -0.02 1.65 16 15 C -0.15 -2.99 6.46 31.79 0.21 -2.79 16 16 C -0.12 -1.77 6.91 32.00 0.22 -1.55 16 17 C -0.10 -1.53 6.00 31.49 0.19 -1.34 16 18 C -0.08 -1.47 1.13 -51.92 -0.06 -1.53 16 19 C -0.12 -2.48 6.73 30.91 0.21 -2.27 16 20 C -0.14 -2.47 7.91 31.21 0.25 -2.22 16 21 C -0.12 -2.25 7.14 30.92 0.22 -2.03 16 22 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 23 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 24 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.03 0.86 8.13 -2.39 -0.02 0.84 16 28 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 29 H 0.34 8.89 8.12 -89.69 -0.73 8.17 16 30 H 0.06 1.28 7.57 -2.39 -0.02 1.26 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.03 7.88 -2.38 -0.02 1.01 16 35 H 0.07 1.08 8.02 -2.38 -0.02 1.06 16 36 H 0.08 2.05 7.22 -2.38 -0.02 2.04 16 37 H 0.06 1.21 8.03 -2.39 -0.02 1.19 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.15 8.03 -2.39 -0.02 1.13 16 41 H 0.07 1.41 8.11 -2.39 -0.02 1.39 16 Total: -1.00 -64.89 316.98 2.95 -61.94 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.18 Total: 15.98 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 2.84 Total: -43.56 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -1.96 Total: -81.35 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -64.89 2.95 -61.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449133826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.108 kcal (2) G-P(sol) polarization free energy of solvation -64.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds