Wall clock time and date at job start Sun Mar 29 2020 21:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99984 * 2 1 4 4 H 1.48505 * 109.46696 * 269.99580 * 3 2 1 5 5 H 1.48495 * 109.47059 * 29.99297 * 3 2 1 6 6 H 1.48495 * 109.47236 * 149.99829 * 3 2 1 7 7 C 1.37881 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00159 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99503 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46723 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46682 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99797 * 174.81046 * 11 10 9 13 13 H 1.09001 * 109.46910 * 327.11712 * 12 11 10 14 14 C 1.52998 * 109.47403 * 87.11443 * 12 11 10 15 15 C 1.52991 * 117.50354 * 252.81873 * 14 12 11 16 16 C 1.52998 * 117.49900 * 184.15618 * 14 12 11 17 17 C 1.52996 * 109.46974 * 207.11810 * 12 11 10 18 18 C 1.54889 * 110.48804 * 308.23946 * 17 12 11 19 19 C 1.55241 * 102.58914 * 156.67877 * 18 17 12 20 20 C 1.54273 * 104.22985 * 322.08408 * 19 18 17 21 21 C 1.53876 * 106.59681 * 23.61174 * 20 19 18 22 22 H 0.97001 * 119.99974 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47149 * 59.99442 * 9 7 2 24 24 H 1.08999 * 109.46877 * 299.99770 * 9 7 2 25 25 H 1.09003 * 109.47198 * 60.00579 * 10 9 7 26 26 H 1.08997 * 109.47180 * 299.99696 * 10 9 7 27 27 H 1.00901 * 111.00580 * 298.76039 * 11 10 9 28 28 H 1.09008 * 115.54425 * 38.49425 * 14 12 11 29 29 H 1.09005 * 117.49647 * 0.02562 * 15 14 12 30 30 H 1.09005 * 117.49968 * 145.01599 * 15 14 12 31 31 H 1.09004 * 117.49433 * 214.98336 * 16 14 12 32 32 H 1.08997 * 117.50248 * 359.97438 * 16 14 12 33 33 H 1.09003 * 110.43533 * 185.69812 * 17 12 11 34 34 H 1.08998 * 110.75836 * 275.06798 * 18 17 12 35 35 H 1.08994 * 110.75671 * 38.44000 * 18 17 12 36 36 H 1.08993 * 110.46923 * 203.39937 * 19 18 17 37 37 H 1.08995 * 110.58361 * 80.82871 * 19 18 17 38 38 H 1.08997 * 110.03362 * 264.32755 * 20 19 18 39 39 H 1.09002 * 110.07318 * 142.91704 * 20 19 18 40 40 H 1.09003 * 110.03028 * 240.71315 * 21 20 19 41 41 H 1.09007 * 110.07091 * 119.30785 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4304 -6.0731 -0.1229 13 1 3.2835 -5.7859 -0.7376 14 6 2.9194 -6.4875 1.2664 15 6 4.3655 -6.1514 1.6358 16 6 3.9667 -7.6001 1.3439 17 6 1.7018 -7.2478 -0.7786 18 6 0.3729 -7.5423 -0.0393 19 6 -0.4655 -8.2672 -1.1263 20 6 -0.1107 -7.5292 -2.4338 21 6 1.2673 -6.8811 -2.2126 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8906 26 1 2.8720 -3.6043 -0.8895 27 1 0.9378 -5.0206 0.8271 28 1 2.1736 -6.4422 2.0601 29 1 4.9685 -5.6346 0.8891 30 1 4.5713 -5.8851 2.6726 31 1 3.9102 -8.2865 2.1888 32 1 4.3072 -8.0372 0.4052 33 1 2.3377 -8.1331 -0.7873 34 1 0.5439 -8.1931 0.8181 35 1 -0.1115 -6.6156 0.2683 36 1 -1.5301 -8.1733 -0.9121 37 1 -0.1817 -9.3175 -1.1920 38 1 -0.8553 -6.7611 -2.6429 39 1 -0.0620 -8.2368 -3.2614 40 1 1.1914 -5.7985 -2.3145 41 1 1.9854 -7.2742 -2.9324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453195081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:41 Heat of formation + Delta-G solvation = -5.325639 kcal Electronic energy + Delta-G solvation = -17277.038204 eV Core-core repulsion = 14770.156493 eV Total energy + Delta-G solvation = -2506.881711 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.17945 -36.64032 -34.83210 -32.76055 -30.35128 -28.42083 -27.96637 -24.80099 -23.29598 -22.30879 -21.28823 -20.39280 -19.81975 -18.89593 -16.38980 -15.98036 -15.29217 -15.18455 -14.69334 -14.39097 -13.70856 -13.44985 -13.00538 -12.87113 -12.37416 -12.00858 -11.76460 -11.52711 -11.23487 -10.99587 -10.95201 -10.89690 -10.79591 -10.58953 -10.44937 -10.34505 -10.22585 -10.06711 -9.90748 -9.77510 -9.24768 -9.08439 -8.31891 -7.68565 -5.96631 -3.98797 3.33736 3.39792 3.42970 3.87975 4.45835 4.63887 4.76493 4.94627 4.96692 5.00013 5.10999 5.18404 5.39342 5.46810 5.64126 5.67434 5.67950 5.77924 5.86760 5.89501 5.94360 6.01752 6.04524 6.14301 6.17007 6.20232 6.34121 6.38557 6.42383 6.53952 6.55586 6.63036 6.83671 7.06008 7.57588 7.79443 7.87827 8.03788 8.14634 8.48378 9.08898 9.64756 11.14783 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.005720 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.390367 B = 4894.112217 C = 5702.864102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.067 3.933 11 N -0.676 5.676 12 C 0.122 3.878 13 H 0.071 0.929 14 C -0.173 4.173 15 C -0.179 4.179 16 C -0.178 4.178 17 C -0.074 4.074 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.117 4.117 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.012 0.988 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.335 0.665 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -16.855 0.017 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.061 4.061 11 N -0.305 5.305 12 C 0.012 3.988 13 H 0.090 0.910 14 C -0.193 4.193 15 C -0.216 4.216 16 C -0.216 4.216 17 C -0.093 4.093 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.154 4.154 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.031 0.969 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.154 0.846 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.230 -16.684 -0.674 17.007 hybrid contribution 0.902 0.946 0.976 1.631 sum 4.132 -15.738 0.302 16.274 Atomic orbital electron populations 1.69974 1.06010 1.26493 1.50821 1.24994 0.94814 0.99136 0.95389 0.86616 0.79816 0.83597 0.78091 1.20662 1.21251 1.19963 1.21195 0.92937 0.91123 1.50637 0.92880 1.19040 0.94031 0.90396 0.97585 1.22159 0.96793 0.88640 0.98482 1.60717 1.22939 1.01517 1.45372 1.21145 0.94441 0.91435 0.91817 0.91037 1.23229 0.92389 1.03292 1.00351 1.22979 0.98232 0.98177 1.02219 1.22850 1.04515 0.91568 1.02687 1.21921 0.96155 0.96251 0.94952 1.22542 0.95593 1.00353 0.96808 1.22374 0.99515 0.98609 0.95553 1.22071 0.97807 0.99023 0.96914 1.22127 0.95437 1.02540 0.95325 0.93055 0.95787 0.96933 0.96560 0.92748 0.84637 0.88164 0.88905 0.89218 0.89371 0.89013 0.91701 0.92667 0.90231 0.92275 0.92565 0.91865 0.92943 0.89748 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.70 5.28 -27.88 -0.15 0.56 16 10 C 0.07 1.41 5.47 -3.82 -0.02 1.39 16 11 N -0.68 -11.63 4.77 -106.72 -0.51 -12.14 16 12 C 0.12 1.74 1.89 -67.71 -0.13 1.61 16 13 H 0.07 1.09 7.48 -51.93 -0.39 0.70 16 14 C -0.17 -2.22 4.75 -90.63 -0.43 -2.65 16 15 C -0.18 -2.24 10.18 -26.70 -0.27 -2.51 16 16 C -0.18 -1.96 9.73 -26.70 -0.26 -2.22 16 17 C -0.07 -0.94 2.63 -88.96 -0.23 -1.17 16 18 C -0.12 -1.41 5.88 -24.55 -0.14 -1.56 16 19 C -0.12 -1.40 6.84 -24.88 -0.17 -1.57 16 20 C -0.12 -1.47 6.80 -25.61 -0.17 -1.65 16 21 C -0.12 -1.56 6.28 -25.61 -0.16 -1.72 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 1.15 7.92 -51.93 -0.41 0.74 16 27 H 0.34 5.68 7.33 -39.29 -0.29 5.40 16 28 H 0.10 1.31 7.96 -51.92 -0.41 0.90 16 29 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 0.96 7.89 -51.93 -0.41 0.55 16 33 H 0.06 0.77 7.48 -51.93 -0.39 0.38 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.10 6.39 -51.93 -0.33 0.77 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.35 7.30 -51.93 -0.38 0.97 16 41 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -29.14 322.65 -10.11 -39.25 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.62 Total: 2.74 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: -2.55 Total: -25.11 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.23 Total: -38.58 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.14 -10.11 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453195081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.923 kcal (2) G-P(sol) polarization free energy of solvation -29.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds