Wall clock time and date at job start Sun Mar 29 2020 21:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99984 * 2 1 4 4 H 1.48505 * 109.46696 * 269.99580 * 3 2 1 5 5 H 1.48495 * 109.47059 * 29.99297 * 3 2 1 6 6 H 1.48495 * 109.47236 * 149.99829 * 3 2 1 7 7 C 1.37881 * 120.00403 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00159 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99503 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46723 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46682 * 179.97438 * 10 9 7 12 12 C 1.46905 * 110.99797 * 174.81046 * 11 10 9 13 13 H 1.09001 * 109.46910 * 327.11712 * 12 11 10 14 14 C 1.52998 * 109.47403 * 87.11443 * 12 11 10 15 15 C 1.52991 * 117.50354 * 252.81873 * 14 12 11 16 16 C 1.52998 * 117.49900 * 184.15618 * 14 12 11 17 17 C 1.52996 * 109.46974 * 207.11810 * 12 11 10 18 18 C 1.54889 * 110.48804 * 308.23946 * 17 12 11 19 19 C 1.55241 * 102.58914 * 156.67877 * 18 17 12 20 20 C 1.54273 * 104.22985 * 322.08408 * 19 18 17 21 21 C 1.53876 * 106.59681 * 23.61174 * 20 19 18 22 22 H 0.97001 * 119.99974 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47149 * 59.99442 * 9 7 2 24 24 H 1.08999 * 109.46877 * 299.99770 * 9 7 2 25 25 H 1.09003 * 109.47198 * 60.00579 * 10 9 7 26 26 H 1.08997 * 109.47180 * 299.99696 * 10 9 7 27 27 H 1.00901 * 111.00580 * 298.76039 * 11 10 9 28 28 H 1.09008 * 115.54425 * 38.49425 * 14 12 11 29 29 H 1.09005 * 117.49647 * 0.02562 * 15 14 12 30 30 H 1.09005 * 117.49968 * 145.01599 * 15 14 12 31 31 H 1.09004 * 117.49433 * 214.98336 * 16 14 12 32 32 H 1.08997 * 117.50248 * 359.97438 * 16 14 12 33 33 H 1.09003 * 110.43533 * 185.69812 * 17 12 11 34 34 H 1.08998 * 110.75836 * 275.06798 * 18 17 12 35 35 H 1.08994 * 110.75671 * 38.44000 * 18 17 12 36 36 H 1.08993 * 110.46923 * 203.39937 * 19 18 17 37 37 H 1.08995 * 110.58361 * 80.82871 * 19 18 17 38 38 H 1.08997 * 110.03362 * 264.32755 * 20 19 18 39 39 H 1.09002 * 110.07318 * 142.91704 * 20 19 18 40 40 H 1.09003 * 110.03028 * 240.71315 * 21 20 19 41 41 H 1.09007 * 110.07091 * 119.30785 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 2.4304 -6.0731 -0.1229 13 1 3.2835 -5.7859 -0.7376 14 6 2.9194 -6.4875 1.2664 15 6 4.3655 -6.1514 1.6358 16 6 3.9667 -7.6001 1.3439 17 6 1.7018 -7.2478 -0.7786 18 6 0.3729 -7.5423 -0.0393 19 6 -0.4655 -8.2672 -1.1263 20 6 -0.1107 -7.5292 -2.4338 21 6 1.2673 -6.8811 -2.2126 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8903 25 1 2.8720 -3.6043 0.8906 26 1 2.8720 -3.6043 -0.8895 27 1 0.9378 -5.0206 0.8271 28 1 2.1736 -6.4422 2.0601 29 1 4.9685 -5.6346 0.8891 30 1 4.5713 -5.8851 2.6726 31 1 3.9102 -8.2865 2.1888 32 1 4.3072 -8.0372 0.4052 33 1 2.3377 -8.1331 -0.7873 34 1 0.5439 -8.1931 0.8181 35 1 -0.1115 -6.6156 0.2683 36 1 -1.5301 -8.1733 -0.9121 37 1 -0.1817 -9.3175 -1.1920 38 1 -0.8553 -6.7611 -2.6429 39 1 -0.0620 -8.2368 -3.2614 40 1 1.1914 -5.7985 -2.3145 41 1 1.9854 -7.2742 -2.9324 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453195081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:41 Heat of formation + Delta-G solvation = -20.507779 kcal Electronic energy + Delta-G solvation = -17277.696551 eV Core-core repulsion = 14770.156493 eV Total energy + Delta-G solvation = -2507.540058 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28757 -37.64057 -36.44842 -34.73004 -31.94328 -29.56157 -29.39664 -26.42101 -24.84634 -23.23565 -22.61163 -21.97506 -20.83081 -20.01817 -18.49505 -17.15677 -16.70779 -16.33257 -16.20932 -15.84167 -14.99656 -14.84725 -14.42590 -14.18314 -13.85090 -13.59600 -13.22916 -12.87313 -12.80269 -12.46599 -12.41239 -12.25011 -11.93873 -11.86017 -11.77495 -11.57367 -11.38923 -11.29680 -11.24591 -11.20818 -11.09536 -10.62172 -10.55520 -9.11971 -8.19925 -6.31276 1.39437 1.41156 1.52088 2.40360 2.91043 3.13383 3.40946 3.64679 3.92000 3.99068 4.01819 4.11928 4.17596 4.35014 4.53946 4.62939 4.65413 4.73925 4.77191 4.78803 4.90488 4.91100 4.97556 5.01632 5.06016 5.12098 5.17354 5.22371 5.26327 5.32383 5.39540 5.46003 5.49571 5.64061 5.71439 5.72624 5.83399 6.18698 6.37193 6.62578 6.86627 7.37911 8.92227 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.005720 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.390367 B = 4894.112217 C = 5702.864102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.035 3.965 10 C 0.091 3.909 11 N -0.678 5.678 12 C 0.126 3.874 13 H 0.061 0.939 14 C -0.185 4.185 15 C -0.192 4.192 16 C -0.152 4.152 17 C -0.067 4.067 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.119 4.119 22 H 0.263 0.737 23 H -0.008 1.008 24 H -0.011 1.011 25 H 0.016 0.984 26 H 0.050 0.950 27 H 0.337 0.663 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.833 -18.208 0.273 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.038 4.038 11 N -0.308 5.308 12 C 0.016 3.984 13 H 0.079 0.921 14 C -0.205 4.205 15 C -0.229 4.229 16 C -0.190 4.190 17 C -0.086 4.086 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.157 4.157 22 H 0.072 0.928 23 H 0.010 0.990 24 H 0.007 0.993 25 H 0.034 0.966 26 H 0.068 0.932 27 H 0.155 0.845 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.542 -18.060 -0.419 18.627 hybrid contribution 0.467 1.336 0.878 1.666 sum 5.010 -16.724 0.459 17.464 Atomic orbital electron populations 1.70111 1.07822 1.27739 1.51528 1.25965 0.95743 1.03314 0.94654 0.85442 0.78641 0.78405 0.78514 1.19760 1.20632 1.18760 1.21622 0.93427 0.92394 1.50783 0.92381 1.18882 0.94269 0.92303 0.94781 1.21705 0.95236 0.88741 0.98155 1.60617 1.23475 1.01120 1.45600 1.21134 0.93628 0.90702 0.92927 0.92107 1.23084 0.92714 1.05534 0.99134 1.23029 0.97701 0.99893 1.02247 1.22931 1.01542 0.90755 1.03748 1.21906 0.96523 0.96009 0.94176 1.22510 0.95261 0.99817 0.97628 1.22371 0.99541 0.99354 0.94360 1.22074 0.96564 0.99006 0.98231 1.22112 0.96651 1.00528 0.96360 0.92777 0.99004 0.99290 0.96578 0.93164 0.84478 0.88356 0.89715 0.88876 0.87588 0.87990 0.89626 0.91147 0.92418 0.92074 0.90616 0.93519 0.91229 0.93127 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.04 1.92 5.28 29.85 0.16 2.08 16 10 C 0.09 3.90 5.47 86.30 0.47 4.37 16 11 N -0.68 -23.97 4.77 -491.57 -2.35 -26.32 16 12 C 0.13 3.52 1.89 44.91 0.08 3.60 16 13 H 0.06 1.83 7.48 -2.39 -0.02 1.81 16 14 C -0.18 -4.49 4.75 -10.80 -0.05 -4.54 16 15 C -0.19 -4.51 10.18 30.61 0.31 -4.20 16 16 C -0.15 -2.89 9.73 30.62 0.30 -2.60 16 17 C -0.07 -1.60 2.63 -9.72 -0.03 -1.63 16 18 C -0.11 -2.64 5.88 32.01 0.19 -2.45 16 19 C -0.12 -2.47 6.84 31.79 0.22 -2.26 16 20 C -0.12 -2.84 6.80 31.32 0.21 -2.63 16 21 C -0.12 -3.10 6.28 31.32 0.20 -2.91 16 22 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 23 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 24 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 25 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 2.19 7.92 -2.39 -0.02 2.17 16 27 H 0.34 11.77 7.33 -89.69 -0.66 11.11 16 28 H 0.10 2.45 7.96 -2.38 -0.02 2.43 16 29 H 0.08 2.12 8.07 -2.38 -0.02 2.10 16 30 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.10 1.76 7.89 -2.39 -0.02 1.74 16 33 H 0.09 1.74 7.48 -2.39 -0.02 1.72 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.59 6.39 -2.39 -0.02 1.57 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.05 1.66 7.30 -2.39 -0.02 1.64 16 41 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -63.48 322.65 3.03 -60.45 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.31 Total: 20.62 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 2.76 Total: -44.14 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -2.06 Total: -83.94 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.48 3.03 -60.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453195081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.942 kcal (2) G-P(sol) polarization free energy of solvation -63.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds