Wall clock time and date at job start Sun Mar 29 2020 21:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99585 * 2 1 4 4 H 1.48497 * 109.46787 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47126 * 299.99826 * 3 2 1 6 6 H 1.48498 * 109.47066 * 59.99776 * 3 2 1 7 7 C 1.37872 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00386 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47100 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46908 * 180.02562 * 10 9 7 12 12 C 1.46903 * 111.00022 * 174.77055 * 11 10 9 13 13 H 1.08996 * 109.47022 * 14.01671 * 12 11 10 14 14 C 1.53000 * 109.46764 * 254.02180 * 12 11 10 15 15 C 1.52999 * 117.50088 * 131.26706 * 14 12 11 16 16 C 1.52996 * 117.50058 * 62.64140 * 14 12 11 17 17 C 1.52994 * 109.47049 * 134.01905 * 12 11 10 18 18 C 1.54265 * 110.03218 * 57.16827 * 17 12 11 19 19 C 1.54888 * 104.19362 * 217.10245 * 18 17 12 20 20 C 1.54884 * 102.74942 * 37.94281 * 19 18 17 21 21 C 1.53868 * 110.03446 * 300.00017 * 17 12 11 22 22 H 0.96997 * 120.00122 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.46353 * 59.99958 * 9 7 2 24 24 H 1.09000 * 109.47143 * 300.00025 * 9 7 2 25 25 H 1.08996 * 109.46997 * 60.00213 * 10 9 7 26 26 H 1.09000 * 109.47340 * 300.00146 * 10 9 7 27 27 H 1.00907 * 110.99914 * 298.72317 * 11 10 9 28 28 H 1.09002 * 115.54843 * 276.97183 * 14 12 11 29 29 H 1.09000 * 117.49335 * 359.97438 * 15 14 12 30 30 H 1.08998 * 117.50330 * 145.01498 * 15 14 12 31 31 H 1.09005 * 117.49565 * 214.97500 * 16 14 12 32 32 H 1.08997 * 117.49978 * 359.97438 * 16 14 12 33 33 H 1.09004 * 110.01574 * 178.60250 * 17 12 11 34 34 H 1.08999 * 110.49115 * 335.78174 * 18 17 12 35 35 H 1.09000 * 110.48962 * 98.42408 * 18 17 12 36 36 H 1.09001 * 110.75687 * 279.62212 * 19 18 17 37 37 H 1.09003 * 110.91731 * 156.32821 * 19 18 17 38 38 H 1.09004 * 110.48789 * 203.37480 * 20 19 18 39 39 H 1.09006 * 110.60237 * 80.79407 * 20 19 18 40 40 H 1.09000 * 110.03520 * 238.57046 * 21 17 12 41 41 H 1.08997 * 110.03134 * 359.97438 * 21 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5110 -4.9342 -0.0001 12 6 2.4307 -6.0729 -0.1251 13 1 3.4512 -5.7377 0.0597 14 6 2.3328 -6.6548 -1.5368 15 6 3.6409 -6.9083 -2.2887 16 6 2.7323 -5.7492 -2.7034 17 6 2.0538 -7.1474 0.8968 18 6 0.5875 -7.5806 0.6917 19 6 0.0566 -7.8161 2.1275 20 6 0.7355 -6.6810 2.9334 21 6 2.1479 -6.5754 2.3221 22 1 -0.4850 0.8400 -0.0004 23 1 0.6249 -2.5570 -0.8898 24 1 0.6242 -2.5567 0.8903 25 1 2.8721 -3.6042 0.8905 26 1 2.8722 -3.6042 -0.8894 27 1 0.9379 -5.0213 0.8258 28 1 1.5138 -7.3551 -1.7008 29 1 4.5712 -6.6601 -1.7778 30 1 3.6829 -7.7756 -2.9475 31 1 2.1765 -5.8542 -3.6352 32 1 3.0645 -4.7388 -2.4654 33 1 2.7156 -8.0075 0.7951 34 1 0.0210 -6.7894 0.2006 35 1 0.5394 -8.5019 0.1112 36 1 0.3673 -8.7927 2.4989 37 1 -1.0285 -7.7188 2.1622 38 1 0.7955 -6.9458 3.9891 39 1 0.1938 -5.7436 2.8066 40 1 2.8548 -7.1584 2.9125 41 1 2.4625 -5.5325 2.2858 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453195082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:43 Heat of formation + Delta-G solvation = -4.618366 kcal Electronic energy + Delta-G solvation = -17430.823536 eV Core-core repulsion = 14923.972495 eV Total energy + Delta-G solvation = -2506.851041 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.39921 -36.62075 -34.67289 -32.72307 -30.46670 -28.62538 -27.99083 -24.84440 -23.39793 -22.05617 -21.18730 -20.40320 -19.96068 -18.81693 -16.39332 -16.13807 -15.41012 -15.09823 -14.54279 -14.22450 -14.04734 -13.47874 -13.17102 -12.80557 -12.34466 -12.13980 -11.79612 -11.28711 -11.12816 -11.03651 -10.97626 -10.90560 -10.76239 -10.70559 -10.54436 -10.44136 -10.35379 -10.01854 -9.82967 -9.70991 -9.22231 -9.06665 -8.32504 -7.66991 -5.97022 -3.99256 3.32419 3.39779 3.43781 4.07180 4.46754 4.57804 4.69125 4.80188 4.94820 5.11328 5.24560 5.38935 5.43260 5.49245 5.53894 5.56485 5.62608 5.75131 5.76893 5.84257 5.89901 5.97702 6.03560 6.08332 6.17005 6.19850 6.35918 6.38841 6.40178 6.40763 6.53470 6.56997 6.64330 7.06840 7.59029 7.80133 7.88582 8.06753 8.16364 8.48101 9.08591 9.64394 11.14391 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.006107 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.865677 B = 4583.873907 C = 5359.487175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.067 3.933 11 N -0.682 5.682 12 C 0.120 3.880 13 H 0.048 0.952 14 C -0.128 4.128 15 C -0.193 4.193 16 C -0.165 4.165 17 C -0.097 4.097 18 C -0.120 4.120 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.127 4.127 22 H 0.259 0.741 23 H 0.025 0.975 24 H 0.012 0.988 25 H 0.011 0.989 26 H 0.057 0.943 27 H 0.338 0.662 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.398 -16.335 1.609 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.061 4.061 11 N -0.314 5.314 12 C 0.010 3.990 13 H 0.067 0.933 14 C -0.147 4.147 15 C -0.231 4.231 16 C -0.202 4.202 17 C -0.116 4.116 18 C -0.158 4.158 19 C -0.163 4.163 20 C -0.164 4.164 21 C -0.165 4.165 22 H 0.069 0.931 23 H 0.043 0.957 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.115 -16.177 0.951 16.502 hybrid contribution 0.901 0.975 0.851 1.577 sum 4.016 -15.202 1.801 15.826 Atomic orbital electron populations 1.69987 1.05998 1.26387 1.50871 1.24996 0.94818 0.99145 0.95390 0.86562 0.80088 0.83934 0.77566 1.19816 1.20988 1.21062 1.21228 0.92951 0.91112 1.50558 0.92855 1.19038 0.94016 0.90328 0.97639 1.22256 0.96769 0.88881 0.98189 1.60572 1.23668 1.01287 1.45888 1.21091 0.95274 0.90800 0.91811 0.93346 1.22242 0.97247 1.02154 0.93072 1.22992 0.94752 1.00750 1.04572 1.22814 1.02777 0.95962 0.98647 1.22072 0.97478 0.98012 0.94083 1.22450 0.95402 1.01428 0.96485 1.22491 0.99822 0.98162 0.95776 1.22385 0.95839 0.99253 0.98877 1.22259 0.97373 1.01355 0.95526 0.93102 0.95669 0.96959 0.97071 0.92494 0.84246 0.88239 0.89475 0.89509 0.89448 0.88421 0.91080 0.89650 0.92201 0.92141 0.91719 0.92073 0.91133 0.92122 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.03 0.72 5.28 -27.88 -0.15 0.57 16 10 C 0.07 1.42 5.31 -3.82 -0.02 1.40 16 11 N -0.68 -12.09 5.32 -106.73 -0.57 -12.66 16 12 C 0.12 1.77 1.88 -67.71 -0.13 1.64 16 13 H 0.05 0.76 7.38 -51.93 -0.38 0.38 16 14 C -0.13 -1.78 5.15 -90.62 -0.47 -2.25 16 15 C -0.19 -2.41 10.18 -26.73 -0.27 -2.68 16 16 C -0.16 -2.42 10.17 -26.73 -0.27 -2.69 16 17 C -0.10 -1.20 2.76 -89.51 -0.25 -1.45 16 18 C -0.12 -1.42 4.90 -25.07 -0.12 -1.54 16 19 C -0.12 -1.35 6.91 -24.74 -0.17 -1.52 16 20 C -0.13 -1.47 6.46 -25.08 -0.16 -1.64 16 21 C -0.13 -1.58 5.73 -25.62 -0.15 -1.73 16 22 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 23 H 0.02 0.72 8.14 -51.92 -0.42 0.29 16 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 1.22 6.44 -51.93 -0.33 0.88 16 27 H 0.34 5.89 5.61 -39.29 -0.22 5.67 16 28 H 0.10 1.33 7.27 -51.93 -0.38 0.95 16 29 H 0.09 1.07 8.06 -51.93 -0.42 0.65 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.10 1.63 6.45 -51.93 -0.33 1.30 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.17 6.75 -51.93 -0.35 0.82 16 35 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.91 7.71 -51.93 -0.40 0.51 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.95 7.21 -51.93 -0.37 0.57 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -29.39 317.22 -10.02 -39.41 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.38 Total: 3.55 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -2.57 Total: -25.51 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.17 Total: -39.09 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.39 -10.02 -39.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453195082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.792 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds