Wall clock time and date at job start Sun Mar 29 2020 22:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47159 * 2 1 4 4 C 1.50708 * 109.46918 * 240.00555 * 2 1 3 5 5 H 1.07998 * 119.99923 * 241.23440 * 4 2 1 6 6 C 1.37874 * 120.00173 * 61.24277 * 4 2 1 7 7 N 1.31511 * 120.00101 * 194.10909 * 6 4 2 8 8 Si 1.86806 * 119.99948 * 14.10703 * 6 4 2 9 9 H 1.48498 * 109.47089 * 84.53785 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.53626 * 8 6 4 11 11 H 1.48493 * 109.47247 * 324.53790 * 8 6 4 12 12 C 1.52992 * 109.47288 * 120.00543 * 2 1 3 13 13 N 1.46898 * 109.47153 * 300.00220 * 12 2 1 14 14 C 1.46899 * 111.00119 * 180.02562 * 13 12 2 15 15 C 1.53957 * 113.57846 * 204.99601 * 14 13 12 16 16 C 1.52903 * 86.78366 * 220.58296 * 15 14 13 17 17 C 1.52905 * 121.13772 * 150.61988 * 16 15 14 18 18 C 1.53955 * 86.78241 * 100.82144 * 17 16 15 19 19 C 1.53074 * 121.06718 * 259.16230 * 16 15 14 20 20 C 1.52912 * 88.04163 * 24.89678 * 16 15 14 21 21 H 1.08995 * 109.47322 * 309.50971 * 1 2 3 22 22 H 1.09006 * 109.47558 * 69.51447 * 1 2 3 23 23 H 1.09009 * 109.47195 * 189.51019 * 1 2 3 24 24 H 1.08995 * 109.47571 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.47593 * 300.00694 * 3 2 1 26 26 H 1.09007 * 109.46964 * 60.00031 * 3 2 1 27 27 H 0.97001 * 120.00110 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47111 * 179.97438 * 12 2 1 29 29 H 1.09005 * 109.47612 * 59.99938 * 12 2 1 30 30 H 1.00898 * 111.00240 * 56.04505 * 13 12 2 31 31 H 1.09003 * 112.82237 * 336.08145 * 14 13 12 32 32 H 1.09000 * 113.65974 * 106.10849 * 15 14 13 33 33 H 1.08995 * 113.74354 * 335.07024 * 15 14 13 34 34 H 1.08995 * 113.66275 * 346.34888 * 17 16 15 35 35 H 1.09003 * 113.66184 * 215.28846 * 17 16 15 36 36 H 1.08995 * 113.57912 * 139.34075 * 18 17 16 37 37 H 1.09005 * 113.57669 * 270.05285 * 18 17 16 38 38 H 1.09002 * 113.66387 * 144.67622 * 19 16 15 39 39 H 1.09002 * 113.70911 * 13.57539 * 19 16 15 40 40 H 1.09000 * 113.65661 * 89.57576 * 20 16 15 41 41 H 1.09000 * 113.66359 * 220.62347 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6366 -1.5999 -1.1317 6 6 1.7205 -0.2244 -2.4826 7 7 1.9116 -0.9748 -3.5456 8 14 1.0264 1.4998 -2.6692 9 1 2.1410 2.4802 -2.7117 10 1 0.2440 1.5850 -3.9285 11 1 0.1425 1.8051 -1.5156 12 6 2.0400 -0.7213 1.2491 13 7 1.5503 -0.0290 2.4486 14 6 2.0219 -0.6948 3.6702 15 6 1.1186 -0.4503 4.8927 16 6 2.4051 -0.3128 5.7076 17 6 2.4626 0.5762 6.9503 18 6 2.3188 -0.7159 7.7750 19 6 2.9193 -1.4664 6.5725 20 6 3.1187 0.0869 4.4157 21 1 -0.3634 0.6538 0.7928 22 1 -0.3634 0.3597 -0.9627 23 1 -0.3634 -1.0136 0.1698 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 1.6919 -0.6331 -4.4264 28 1 3.1300 -0.7217 1.2488 29 1 1.6767 -1.7490 1.2491 30 1 0.5438 0.0411 2.4401 31 1 2.2662 -1.7453 3.5117 32 1 0.5150 -1.3143 5.1704 33 1 0.5384 0.4704 4.8325 34 1 1.6127 1.2521 7.0444 35 1 3.4212 1.0771 7.0858 36 1 2.9503 -0.7389 8.6631 37 1 1.2838 -0.9861 7.9850 38 1 4.0064 -1.5405 6.6016 39 1 2.4338 -2.4200 6.3651 40 1 3.1014 1.1591 4.2202 41 1 4.1128 -0.3479 4.3125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459683955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:22 Heat of formation + Delta-G solvation = 47.625500 kcal Electronic energy + Delta-G solvation = -17420.394637 eV Core-core repulsion = 14915.809060 eV Total energy + Delta-G solvation = -2504.585577 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37277 -37.15092 -35.09736 -32.20955 -30.71622 -26.17881 -25.86752 -25.82338 -25.14638 -24.51979 -22.95745 -20.21978 -18.75905 -17.86495 -16.08926 -15.74251 -15.45106 -15.28601 -14.97256 -14.36811 -13.43900 -13.00496 -12.76766 -12.66943 -12.58777 -12.50830 -12.04464 -11.90459 -11.82772 -11.74401 -11.19920 -10.84956 -10.74799 -10.35513 -10.20421 -10.10741 -10.03888 -9.99846 -9.81489 -9.60830 -8.91991 -8.50214 -8.33131 -7.81711 -6.05253 -4.00620 3.35326 3.44535 3.47919 4.37390 4.39460 4.47128 4.59128 4.71010 4.78190 5.03219 5.04783 5.28325 5.37889 5.50268 5.58064 5.63389 5.76754 5.79146 5.86158 5.94219 6.01919 6.03267 6.12163 6.19081 6.29082 6.34418 6.42694 6.55414 6.63274 6.68337 6.71470 6.89517 6.96603 7.06432 7.40505 7.62180 7.63804 7.87255 8.00767 8.58626 8.99650 9.61213 11.08226 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.056657 B = 0.004965 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.079083 B = 5638.458259 C = 5769.885753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 C -0.134 4.134 4 C -0.511 4.511 5 H 0.070 0.930 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.888 3.112 9 H -0.287 1.287 10 H -0.309 1.309 11 H -0.248 1.248 12 C 0.085 3.915 13 N -0.679 5.679 14 C 0.064 3.936 15 C -0.118 4.118 16 C -0.106 4.106 17 C -0.126 4.126 18 C -0.140 4.140 19 C -0.118 4.118 20 C -0.111 4.111 21 H 0.027 0.973 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.044 0.956 25 H 0.029 0.971 26 H 0.043 0.957 27 H 0.262 0.738 28 H 0.062 0.938 29 H 0.021 0.979 30 H 0.336 0.664 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 1.966 19.545 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.038 3.962 3 C -0.190 4.190 4 C -0.550 4.550 5 H 0.088 0.912 6 C -0.129 4.129 7 N -0.536 5.536 8 Si 0.722 3.278 9 H -0.215 1.215 10 H -0.238 1.238 11 H -0.174 1.174 12 C -0.044 4.044 13 N -0.310 5.310 14 C -0.047 4.047 15 C -0.156 4.156 16 C -0.106 4.106 17 C -0.163 4.163 18 C -0.177 4.177 19 C -0.155 4.155 20 C -0.150 4.150 21 H 0.046 0.954 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.156 0.844 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.261 2.390 19.333 19.482 hybrid contribution -0.791 0.067 -0.365 0.874 sum -1.052 2.458 18.968 19.156 Atomic orbital electron populations 1.22285 0.98620 0.99072 1.00046 1.18478 0.91803 0.92613 0.93323 1.22148 1.00356 0.98134 0.98404 1.20877 1.33463 1.12038 0.88577 0.91163 1.24984 0.94772 0.97340 0.95819 1.69968 1.48916 1.35986 0.98687 0.87246 0.79352 0.85597 0.75645 1.21527 1.23806 1.17425 1.21983 0.99370 0.94365 0.88660 1.60724 1.15857 1.53213 1.01232 1.22932 0.96488 0.96261 0.89014 1.22939 0.95313 1.01854 0.95485 1.22325 0.98145 0.97288 0.92887 1.22717 1.01829 0.96134 0.95658 1.22814 1.00950 0.97140 0.96836 1.22677 1.00505 0.96912 0.95427 1.22889 0.97388 1.01261 0.93437 0.95435 0.92844 0.94260 0.93685 0.95260 0.93827 0.92785 0.91930 0.96114 0.84445 0.91605 0.91921 0.89353 0.91625 0.90184 0.91848 0.90486 0.90003 0.91583 0.89301 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 7.24 37.16 0.27 -2.81 16 2 C 0.04 0.90 0.57 -155.66 -0.09 0.81 16 3 C -0.13 -2.98 7.54 37.16 0.28 -2.70 16 4 C -0.51 -14.28 8.62 -34.44 -0.30 -14.58 16 5 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 6 C 0.07 2.09 5.32 -17.82 -0.09 2.00 16 7 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 8 Si 0.89 22.33 22.79 -169.99 -3.87 18.45 16 9 H -0.29 -7.22 7.10 56.52 0.40 -6.82 16 10 H -0.31 -7.87 7.11 56.52 0.40 -7.47 16 11 H -0.25 -5.79 4.65 56.52 0.26 -5.52 16 12 C 0.08 1.70 4.41 -3.83 -0.02 1.68 16 13 N -0.68 -11.29 5.78 -105.69 -0.61 -11.90 16 14 C 0.06 0.89 4.14 -66.73 -0.28 0.62 16 15 C -0.12 -1.38 7.41 -26.28 -0.19 -1.57 16 16 C -0.11 -1.15 1.11 -154.63 -0.17 -1.32 16 17 C -0.13 -1.20 7.84 -26.28 -0.21 -1.41 16 18 C -0.14 -1.22 8.08 -25.75 -0.21 -1.42 16 19 C -0.12 -1.14 7.85 -26.20 -0.21 -1.35 16 20 C -0.11 -1.44 7.64 -26.28 -0.20 -1.64 16 21 H 0.03 0.51 7.06 -51.93 -0.37 0.15 16 22 H 0.05 1.23 4.31 -51.93 -0.22 1.01 16 23 H 0.04 0.82 8.12 -51.92 -0.42 0.39 16 24 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.03 0.68 2.26 -51.93 -0.12 0.57 16 26 H 0.04 0.88 7.60 -51.92 -0.39 0.48 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.02 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.34 5.40 6.81 -39.29 -0.27 5.14 16 31 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -29.22 305.31 -7.91 -37.13 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.39 Total: 2.33 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.41 Total: -23.71 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.16 Total: -38.80 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -3.87 Total: 18.45 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.22 -7.91 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459683955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.751 kcal (2) G-P(sol) polarization free energy of solvation -29.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds