Wall clock time and date at job start Sun Mar 29 2020 22:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47159 * 2 1 4 4 C 1.50708 * 109.46918 * 240.00555 * 2 1 3 5 5 H 1.07998 * 119.99923 * 241.23440 * 4 2 1 6 6 C 1.37874 * 120.00173 * 61.24277 * 4 2 1 7 7 N 1.31511 * 120.00101 * 194.10909 * 6 4 2 8 8 Si 1.86806 * 119.99948 * 14.10703 * 6 4 2 9 9 H 1.48498 * 109.47089 * 84.53785 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.53626 * 8 6 4 11 11 H 1.48493 * 109.47247 * 324.53790 * 8 6 4 12 12 C 1.52992 * 109.47288 * 120.00543 * 2 1 3 13 13 N 1.46898 * 109.47153 * 300.00220 * 12 2 1 14 14 C 1.46899 * 111.00119 * 180.02562 * 13 12 2 15 15 C 1.53957 * 113.57846 * 204.99601 * 14 13 12 16 16 C 1.52903 * 86.78366 * 220.58296 * 15 14 13 17 17 C 1.52905 * 121.13772 * 150.61988 * 16 15 14 18 18 C 1.53955 * 86.78241 * 100.82144 * 17 16 15 19 19 C 1.53074 * 121.06718 * 259.16230 * 16 15 14 20 20 C 1.52912 * 88.04163 * 24.89678 * 16 15 14 21 21 H 1.08995 * 109.47322 * 309.50971 * 1 2 3 22 22 H 1.09006 * 109.47558 * 69.51447 * 1 2 3 23 23 H 1.09009 * 109.47195 * 189.51019 * 1 2 3 24 24 H 1.08995 * 109.47571 * 179.97438 * 3 2 1 25 25 H 1.08995 * 109.47593 * 300.00694 * 3 2 1 26 26 H 1.09007 * 109.46964 * 60.00031 * 3 2 1 27 27 H 0.97001 * 120.00110 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.47111 * 179.97438 * 12 2 1 29 29 H 1.09005 * 109.47612 * 59.99938 * 12 2 1 30 30 H 1.00898 * 111.00240 * 56.04505 * 13 12 2 31 31 H 1.09003 * 112.82237 * 336.08145 * 14 13 12 32 32 H 1.09000 * 113.65974 * 106.10849 * 15 14 13 33 33 H 1.08995 * 113.74354 * 335.07024 * 15 14 13 34 34 H 1.08995 * 113.66275 * 346.34888 * 17 16 15 35 35 H 1.09003 * 113.66184 * 215.28846 * 17 16 15 36 36 H 1.08995 * 113.57912 * 139.34075 * 18 17 16 37 37 H 1.09005 * 113.57669 * 270.05285 * 18 17 16 38 38 H 1.09002 * 113.66387 * 144.67622 * 19 16 15 39 39 H 1.09002 * 113.70911 * 13.57539 * 19 16 15 40 40 H 1.09000 * 113.65661 * 89.57576 * 20 16 15 41 41 H 1.09000 * 113.66359 * 220.62347 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6366 -1.5999 -1.1317 6 6 1.7205 -0.2244 -2.4826 7 7 1.9116 -0.9748 -3.5456 8 14 1.0264 1.4998 -2.6692 9 1 2.1410 2.4802 -2.7117 10 1 0.2440 1.5850 -3.9285 11 1 0.1425 1.8051 -1.5156 12 6 2.0400 -0.7213 1.2491 13 7 1.5503 -0.0290 2.4486 14 6 2.0219 -0.6948 3.6702 15 6 1.1186 -0.4503 4.8927 16 6 2.4051 -0.3128 5.7076 17 6 2.4626 0.5762 6.9503 18 6 2.3188 -0.7159 7.7750 19 6 2.9193 -1.4664 6.5725 20 6 3.1187 0.0869 4.4157 21 1 -0.3634 0.6538 0.7928 22 1 -0.3634 0.3597 -0.9627 23 1 -0.3634 -1.0136 0.1698 24 1 3.1299 1.4425 0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6766 1.9563 0.8901 27 1 1.6919 -0.6331 -4.4264 28 1 3.1300 -0.7217 1.2488 29 1 1.6767 -1.7490 1.2491 30 1 0.5438 0.0411 2.4401 31 1 2.2662 -1.7453 3.5117 32 1 0.5150 -1.3143 5.1704 33 1 0.5384 0.4704 4.8325 34 1 1.6127 1.2521 7.0444 35 1 3.4212 1.0771 7.0858 36 1 2.9503 -0.7389 8.6631 37 1 1.2838 -0.9861 7.9850 38 1 4.0064 -1.5405 6.6016 39 1 2.4338 -2.4200 6.3651 40 1 3.1014 1.1591 4.2202 41 1 4.1128 -0.3479 4.3125 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459683955.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:22 Heat of formation + Delta-G solvation = 29.687051 kcal Electronic energy + Delta-G solvation = -17421.172507 eV Core-core repulsion = 14915.809060 eV Total energy + Delta-G solvation = -2505.363447 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.28620 -38.76853 -36.32564 -34.12414 -32.29207 -27.93127 -27.17058 -26.80425 -26.58705 -26.11218 -24.00199 -21.25880 -20.60604 -18.74452 -18.07313 -17.38614 -16.65248 -16.37681 -16.08332 -15.71314 -15.04467 -14.83618 -14.32303 -14.13431 -13.88135 -13.68606 -13.57104 -13.41021 -12.89552 -12.77284 -12.62502 -12.31862 -11.97343 -11.87892 -11.86056 -11.67088 -11.58539 -11.03189 -10.95755 -10.94301 -10.64469 -10.56449 -10.25251 -9.20776 -8.29448 -6.28505 1.36839 1.38717 1.50383 2.35971 3.07706 3.34486 3.54534 3.71644 3.77328 3.91947 4.02108 4.08637 4.28722 4.38350 4.48699 4.59303 4.62858 4.83781 4.85615 4.89712 4.90373 4.92767 4.95945 4.99951 5.06507 5.08104 5.13544 5.15383 5.19102 5.22255 5.29999 5.43054 5.56576 5.59874 5.68480 5.76823 5.87260 6.28575 6.36213 6.62634 6.79175 7.36799 8.87937 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.056657 B = 0.004965 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.079083 B = 5638.458259 C = 5769.885753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.033 3.967 3 C -0.129 4.129 4 C -0.514 4.514 5 H 0.026 0.974 6 C 0.016 3.984 7 N -0.949 5.949 8 Si 0.945 3.055 9 H -0.286 1.286 10 H -0.315 1.315 11 H -0.212 1.212 12 C 0.100 3.900 13 N -0.673 5.673 14 C 0.053 3.947 15 C -0.107 4.107 16 C -0.104 4.104 17 C -0.124 4.124 18 C -0.132 4.132 19 C -0.121 4.121 20 C -0.113 4.113 21 H 0.063 0.937 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.022 0.978 26 H 0.071 0.929 27 H 0.263 0.737 28 H 0.047 0.953 29 H 0.008 0.992 30 H 0.343 0.657 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.988 3.667 22.194 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.032 3.968 3 C -0.186 4.186 4 C -0.553 4.553 5 H 0.044 0.956 6 C -0.181 4.181 7 N -0.589 5.589 8 Si 0.776 3.224 9 H -0.213 1.213 10 H -0.245 1.245 11 H -0.136 1.136 12 C -0.030 4.030 13 N -0.304 5.304 14 C -0.057 4.057 15 C -0.145 4.145 16 C -0.104 4.104 17 C -0.161 4.161 18 C -0.169 4.169 19 C -0.158 4.158 20 C -0.151 4.151 21 H 0.081 0.919 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.162 0.838 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.497 4.094 22.027 22.454 hybrid contribution -0.320 -0.579 -1.160 1.336 sum -1.818 3.515 20.867 21.238 Atomic orbital electron populations 1.22186 0.96918 1.00048 1.00503 1.18492 0.93091 0.93023 0.92189 1.22075 0.99950 0.97274 0.99279 1.21223 1.32247 1.10835 0.90959 0.95559 1.25816 0.95562 1.01303 0.95387 1.70114 1.51282 1.38166 0.99345 0.86316 0.79282 0.80366 0.76482 1.21347 1.24482 1.13550 1.21632 0.98333 0.93686 0.89317 1.60669 1.16249 1.52811 1.00692 1.23059 0.98195 0.95780 0.88701 1.22871 0.95430 1.02443 0.93723 1.22326 0.97008 0.98544 0.92566 1.22732 1.02272 0.96448 0.94681 1.22790 1.01444 0.95976 0.96734 1.22731 1.00787 0.96587 0.95720 1.22873 0.96974 1.00565 0.94716 0.91863 0.94245 0.94230 0.94502 0.95957 0.91027 0.92825 0.93490 0.97366 0.83764 0.92579 0.91000 0.88815 0.91177 0.89824 0.90678 0.89907 0.89770 0.91660 0.89947 0.92658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.66 7.24 71.98 0.52 -5.14 16 2 C 0.03 1.49 0.57 -52.93 -0.03 1.46 16 3 C -0.13 -5.45 7.54 71.98 0.54 -4.91 16 4 C -0.51 -29.40 8.62 25.60 0.22 -29.18 16 5 H 0.03 1.68 7.99 -2.91 -0.02 1.65 16 6 C 0.02 0.95 5.32 84.65 0.45 1.40 16 7 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 8 Si 0.95 45.60 22.79 68.60 1.56 47.17 16 9 H -0.29 -13.64 7.10 99.48 0.71 -12.93 16 10 H -0.32 -15.44 7.11 99.48 0.71 -14.74 16 11 H -0.21 -8.95 4.65 99.48 0.46 -8.49 16 12 C 0.10 3.96 4.41 86.30 0.38 4.34 16 13 N -0.67 -20.99 5.78 -488.29 -2.82 -23.81 16 14 C 0.05 1.40 4.14 45.55 0.19 1.59 16 15 C -0.11 -2.21 7.41 30.89 0.23 -1.98 16 16 C -0.10 -2.01 1.11 -52.26 -0.06 -2.07 16 17 C -0.12 -2.01 7.84 30.89 0.24 -1.76 16 18 C -0.13 -1.89 8.08 31.23 0.25 -1.64 16 19 C -0.12 -2.07 7.85 30.94 0.24 -1.82 16 20 C -0.11 -2.75 7.64 30.88 0.24 -2.51 16 21 H 0.06 2.12 7.06 -2.39 -0.02 2.10 16 22 H 0.04 1.70 4.31 -2.38 -0.01 1.69 16 23 H 0.04 1.57 8.12 -2.38 -0.02 1.55 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.02 0.97 2.26 -2.39 -0.01 0.97 16 26 H 0.07 2.62 7.60 -2.38 -0.02 2.60 16 27 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.01 0.34 8.13 -2.38 -0.02 0.32 16 30 H 0.34 9.93 6.81 -89.70 -0.61 9.32 16 31 H 0.06 1.62 7.87 -2.39 -0.02 1.60 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -63.89 305.31 2.59 -61.30 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.13 Total: 17.68 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 3.42 Total: -42.22 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -2.52 Total: -83.93 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.56 Total: 47.17 kcal Total: -63.89 2.59 -61.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459683955.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.991 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds