Wall clock time and date at job start Sun Mar 29 2020 22:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 13 13 N 1.46896 * 109.47500 * 300.00262 * 12 2 1 14 14 C 1.46900 * 111.00713 * 179.97438 * 13 12 2 15 15 C 1.53002 * 109.47312 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.63638 * 304.57748 * 15 14 13 17 17 C 1.53022 * 109.64229 * 64.99903 * 15 14 13 18 18 C 1.50064 * 110.14525 * 169.11846 * 17 15 14 19 19 C 1.29444 * 124.07706 * 342.87514 * 18 17 15 20 20 C 1.50075 * 124.07473 * 0.48489 * 19 18 17 21 21 C 1.53028 * 110.13651 * 342.83486 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47066 * 60.00169 * 12 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 12 2 1 31 31 H 1.00907 * 110.99525 * 303.95567 * 13 12 2 32 32 H 1.09000 * 109.47033 * 300.00237 * 14 13 12 33 33 H 1.09001 * 109.46803 * 59.99944 * 14 13 12 34 34 H 1.08999 * 109.36096 * 289.32606 * 17 15 14 35 35 H 1.09004 * 109.35783 * 49.05319 * 17 15 14 36 36 H 1.07995 * 117.96209 * 162.89357 * 18 17 15 37 37 H 1.07997 * 117.96528 * 180.46922 * 19 18 17 38 38 H 1.09001 * 109.35426 * 103.06031 * 20 19 18 39 39 H 1.09004 * 109.35458 * 222.77937 * 20 19 18 40 40 H 1.08996 * 109.66348 * 289.77250 * 21 20 19 41 41 H 1.09004 * 109.63612 * 169.14002 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 6 2.0400 -0.7212 1.2491 13 7 1.5504 -0.0289 2.4486 14 6 2.0210 -0.6953 3.6703 15 6 1.4924 0.0532 4.8955 16 1 1.7873 1.1011 4.8399 17 6 -0.0336 -0.0501 4.9427 18 6 -0.5445 0.4445 6.2641 19 6 0.1924 0.5894 7.3184 20 6 1.6628 0.2928 7.3638 21 6 2.0612 -0.5800 6.1716 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 0.7093 1.1618 -3.4844 29 1 1.6768 -1.7489 1.2491 30 1 3.1300 -0.7216 1.2489 31 1 1.8198 0.9435 2.4401 32 1 1.6572 -1.7227 3.6868 33 1 3.1109 -0.6955 3.6872 34 1 -0.4614 0.5524 4.1414 35 1 -0.3296 -1.0907 4.8097 36 1 -1.5922 0.6950 6.3403 37 1 -0.2803 0.9460 8.2216 38 1 2.2213 1.2282 7.3298 39 1 1.8967 -0.2343 8.2889 40 1 1.6514 -1.5821 6.2975 41 1 3.1478 -0.6314 6.1022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459731422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:58 Heat of formation + Delta-G solvation = -10.923352 kcal Electronic energy + Delta-G solvation = -17251.158029 eV Core-core repulsion = 14744.033583 eV Total energy + Delta-G solvation = -2507.124446 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.78785 -36.69717 -34.07482 -31.65288 -30.74660 -29.84655 -25.54764 -25.41833 -25.12141 -23.43205 -22.39598 -20.74700 -18.40590 -17.79262 -16.13083 -15.77546 -15.02501 -14.64254 -14.27800 -14.22335 -13.44490 -13.21471 -12.88643 -12.58024 -12.41120 -12.15981 -12.01520 -11.82006 -11.46852 -11.10229 -10.97771 -10.62517 -10.58816 -10.54236 -10.28156 -10.16016 -10.02393 -10.01593 -9.34623 -9.00606 -8.93256 -8.58070 -8.26684 -7.62377 -5.88728 -3.98915 2.33296 3.31793 3.40117 3.43751 4.45349 4.65228 4.77881 4.83402 5.12560 5.32628 5.36758 5.39162 5.44833 5.58850 5.64762 5.84478 5.89217 5.95995 6.01311 6.09366 6.20504 6.38085 6.40682 6.46275 6.55418 6.70936 6.76073 6.93196 7.02045 7.11722 7.20633 7.42126 7.51345 7.78473 7.79584 7.87441 8.04214 8.24975 8.38236 8.59327 9.02873 9.66026 11.11770 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.055303 B = 0.004588 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.184383 B = 6101.418769 C = 6292.263091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.067 3.933 3 C -0.132 4.132 4 C -0.505 4.505 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.076 3.924 13 N -0.685 5.685 14 C 0.063 3.937 15 C -0.083 4.083 16 H 0.068 0.932 17 C -0.078 4.078 18 C -0.145 4.145 19 C -0.172 4.172 20 C -0.087 4.087 21 C -0.115 4.115 22 H 0.020 0.980 23 H 0.017 0.983 24 H 0.073 0.927 25 H 0.011 0.989 26 H 0.018 0.982 27 H 0.082 0.918 28 H 0.257 0.743 29 H 0.054 0.946 30 H 0.011 0.989 31 H 0.336 0.664 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 -0.343 16.094 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.067 3.933 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.053 4.053 13 N -0.317 5.317 14 C -0.067 4.067 15 C -0.102 4.102 16 H 0.086 0.914 17 C -0.115 4.115 18 C -0.164 4.164 19 C -0.190 4.190 20 C -0.124 4.124 21 C -0.153 4.153 22 H 0.039 0.961 23 H 0.036 0.964 24 H 0.092 0.908 25 H 0.030 0.970 26 H 0.037 0.963 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.154 0.846 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.446 -0.564 15.942 15.958 hybrid contribution 1.234 -0.218 -0.820 1.498 sum 0.788 -0.782 15.122 15.162 Atomic orbital electron populations 1.21625 0.97393 0.98512 1.00031 1.18101 0.93213 0.91962 0.90032 1.21826 0.97643 0.99212 1.00256 1.21161 1.30919 1.11794 0.90525 0.93009 1.24884 0.95061 0.94986 0.98675 1.69844 1.36932 1.22852 1.22746 0.86614 0.78600 0.79726 0.83472 1.19975 1.21123 1.21191 1.22127 0.95370 0.97778 0.89987 1.60583 1.63629 1.06257 1.01217 1.21982 0.96215 0.98449 0.90061 1.21197 0.95623 0.99706 0.93634 0.91375 1.20406 0.94820 1.01618 0.94682 1.22260 0.99306 0.99397 0.95394 1.21973 0.95970 1.02924 0.98121 1.20405 0.93803 0.99800 0.98419 1.21638 1.00266 0.99103 0.94329 0.96078 0.96380 0.90834 0.97025 0.96304 0.89885 0.93289 0.92709 0.97080 0.84554 0.91632 0.96206 0.89754 0.91003 0.88360 0.88603 0.91261 0.91581 0.91805 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.89 8.09 37.16 0.30 -2.59 16 2 C 0.07 1.64 0.57 -155.66 -0.09 1.56 16 3 C -0.13 -3.13 7.92 37.16 0.29 -2.84 16 4 C -0.51 -13.73 8.01 -34.44 -0.28 -14.01 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 6 C 0.06 1.77 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -24.65 9.35 55.43 0.52 -24.14 16 8 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 C 0.08 1.60 4.59 -3.83 -0.02 1.58 16 13 N -0.69 -12.19 5.38 -113.79 -0.61 -12.80 16 14 C 0.06 0.93 5.08 -3.82 -0.02 0.91 16 15 C -0.08 -1.05 2.39 -90.41 -0.22 -1.26 16 16 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 17 C -0.08 -1.01 5.21 -28.18 -0.15 -1.16 16 18 C -0.15 -1.68 9.80 -35.90 -0.35 -2.03 16 19 C -0.17 -1.82 9.80 -35.90 -0.35 -2.17 16 20 C -0.09 -0.86 6.12 -28.17 -0.17 -1.03 16 21 C -0.12 -1.24 5.31 -26.51 -0.14 -1.38 16 22 H 0.02 0.47 7.60 -51.93 -0.39 0.07 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 25 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.34 5.96 6.77 -39.29 -0.27 5.69 16 32 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 35 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.10 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.10 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -27.04 314.51 -9.16 -36.19 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.50 Total: 2.53 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -1.28 Total: -22.75 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.09 Total: -36.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.04 -9.16 -36.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.271 kcal (2) G-P(sol) polarization free energy of solvation -27.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds