Wall clock time and date at job start Sun Mar 29 2020 22:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 C 1.52992 * 109.47482 * 120.00142 * 2 1 3 13 13 N 1.46896 * 109.47500 * 300.00262 * 12 2 1 14 14 C 1.46900 * 111.00713 * 179.97438 * 13 12 2 15 15 C 1.53002 * 109.47312 * 179.97438 * 14 13 12 16 16 H 1.09002 * 109.63638 * 304.57748 * 15 14 13 17 17 C 1.53022 * 109.64229 * 64.99903 * 15 14 13 18 18 C 1.50064 * 110.14525 * 169.11846 * 17 15 14 19 19 C 1.29444 * 124.07706 * 342.87514 * 18 17 15 20 20 C 1.50075 * 124.07473 * 0.48489 * 19 18 17 21 21 C 1.53028 * 110.13651 * 342.83486 * 20 19 18 22 22 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47066 * 60.00169 * 12 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 12 2 1 31 31 H 1.00907 * 110.99525 * 303.95567 * 13 12 2 32 32 H 1.09000 * 109.47033 * 300.00237 * 14 13 12 33 33 H 1.09001 * 109.46803 * 59.99944 * 14 13 12 34 34 H 1.08999 * 109.36096 * 289.32606 * 17 15 14 35 35 H 1.09004 * 109.35783 * 49.05319 * 17 15 14 36 36 H 1.07995 * 117.96209 * 162.89357 * 18 17 15 37 37 H 1.07997 * 117.96528 * 180.46922 * 19 18 17 38 38 H 1.09001 * 109.35426 * 103.06031 * 20 19 18 39 39 H 1.09004 * 109.35458 * 222.77937 * 20 19 18 40 40 H 1.08996 * 109.66348 * 289.77250 * 21 20 19 41 41 H 1.09004 * 109.63612 * 169.14002 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 6 2.0400 -0.7212 1.2491 13 7 1.5504 -0.0289 2.4486 14 6 2.0210 -0.6953 3.6703 15 6 1.4924 0.0532 4.8955 16 1 1.7873 1.1011 4.8399 17 6 -0.0336 -0.0501 4.9427 18 6 -0.5445 0.4445 6.2641 19 6 0.1924 0.5894 7.3184 20 6 1.6628 0.2928 7.3638 21 6 2.0612 -0.5800 6.1716 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 0.7093 1.1618 -3.4844 29 1 1.6768 -1.7489 1.2491 30 1 3.1300 -0.7216 1.2489 31 1 1.8198 0.9435 2.4401 32 1 1.6572 -1.7227 3.6868 33 1 3.1109 -0.6955 3.6872 34 1 -0.4614 0.5524 4.1414 35 1 -0.3296 -1.0907 4.8097 36 1 -1.5922 0.6950 6.3403 37 1 -0.2803 0.9460 8.2216 38 1 2.2213 1.2282 7.3298 39 1 1.8967 -0.2343 8.2889 40 1 1.6514 -1.5821 6.2975 41 1 3.1478 -0.6314 6.1022 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459731422.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:58 Heat of formation + Delta-G solvation = -24.224032 kcal Electronic energy + Delta-G solvation = -17251.734790 eV Core-core repulsion = 14744.033583 eV Total energy + Delta-G solvation = -2507.701207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.80785 -38.36770 -35.61519 -33.31614 -31.71788 -31.19976 -27.49623 -27.25046 -26.75256 -24.73249 -23.50006 -21.81548 -20.28325 -18.71461 -17.90152 -17.10541 -16.62077 -16.17139 -15.62345 -15.39690 -14.80514 -14.55004 -14.33586 -13.92195 -13.80316 -13.51968 -13.24701 -13.13311 -12.94018 -12.86450 -12.55791 -12.46487 -12.36254 -12.09541 -12.05478 -11.54101 -11.35023 -11.30636 -11.01032 -10.75834 -10.57547 -10.33891 -9.78857 -9.10427 -7.96055 -6.12969 1.41216 1.44472 1.48886 1.53922 2.46924 3.25932 3.43182 3.83648 3.91116 4.08903 4.37941 4.43293 4.53064 4.58989 4.63092 4.67054 4.75772 4.87157 4.90047 4.91887 4.97331 5.05385 5.07968 5.17765 5.19715 5.29635 5.30734 5.40939 5.45110 5.54876 5.56259 5.70853 5.78195 5.85690 6.15651 6.19986 6.28800 6.36166 6.51331 6.68280 6.96892 7.54650 9.02214 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.055303 B = 0.004588 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.184383 B = 6101.418769 C = 6292.263091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.058 3.942 3 C -0.120 4.120 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.903 5.903 8 Si 0.945 3.055 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.091 3.909 13 N -0.685 5.685 14 C 0.065 3.935 15 C -0.076 4.076 16 H 0.065 0.935 17 C -0.075 4.075 18 C -0.165 4.165 19 C -0.164 4.164 20 C -0.089 4.089 21 C -0.112 4.112 22 H 0.035 0.965 23 H 0.009 0.991 24 H 0.047 0.953 25 H 0.034 0.966 26 H 0.016 0.984 27 H 0.055 0.945 28 H 0.257 0.743 29 H 0.046 0.954 30 H 0.006 0.994 31 H 0.337 0.663 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 -0.466 17.671 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.057 3.943 3 C -0.178 4.178 4 C -0.565 4.565 5 H 0.062 0.938 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C -0.038 4.038 13 N -0.317 5.317 14 C -0.064 4.064 15 C -0.095 4.095 16 H 0.084 0.916 17 C -0.112 4.112 18 C -0.183 4.183 19 C -0.182 4.182 20 C -0.126 4.126 21 C -0.150 4.150 22 H 0.054 0.946 23 H 0.028 0.972 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.035 0.965 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.156 0.844 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.133 -0.688 17.533 17.547 hybrid contribution 1.048 -0.174 -1.264 1.651 sum 1.181 -0.862 16.269 16.334 Atomic orbital electron populations 1.21451 0.97672 0.97667 0.99363 1.18164 0.92962 0.92415 0.90757 1.21652 0.97335 0.98799 0.99989 1.21471 1.31092 1.11885 0.92021 0.93831 1.25534 0.95325 0.95673 1.01163 1.69972 1.37447 1.23649 1.23192 0.85719 0.78067 0.78759 0.80316 1.19697 1.20913 1.20826 1.21790 0.94828 0.97107 0.90124 1.60506 1.63721 1.06255 1.01202 1.22035 0.96535 0.98360 0.89495 1.21130 0.95457 0.99354 0.93570 0.91610 1.20311 0.94945 1.00857 0.95117 1.22241 0.99979 1.01032 0.95059 1.22230 0.96397 1.01272 0.98257 1.20471 0.93289 1.00137 0.98661 1.21621 1.00713 0.99120 0.93585 0.94627 0.97215 0.93401 0.94713 0.96513 0.92623 0.93346 0.93568 0.97551 0.84378 0.91889 0.95687 0.91711 0.91798 0.87765 0.86933 0.90548 0.89715 0.91830 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.12 8.09 71.98 0.58 -4.53 16 2 C 0.06 2.81 0.57 -52.93 -0.03 2.78 16 3 C -0.12 -5.68 7.92 71.98 0.57 -5.11 16 4 C -0.53 -28.74 8.01 25.60 0.21 -28.54 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.02 1.20 5.15 84.65 0.44 1.64 16 7 N -0.90 -50.81 9.35 21.45 0.20 -50.61 16 8 Si 0.94 43.68 29.54 68.60 2.03 45.71 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 C 0.09 3.79 4.59 86.30 0.40 4.19 16 13 N -0.69 -23.74 5.38 -513.91 -2.76 -26.51 16 14 C 0.06 1.84 5.08 86.30 0.44 2.27 16 15 C -0.08 -1.80 2.39 -10.65 -0.03 -1.83 16 16 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 17 C -0.08 -1.87 5.21 29.66 0.15 -1.72 16 18 C -0.17 -3.54 9.80 27.04 0.27 -3.28 16 19 C -0.16 -3.03 9.80 27.04 0.27 -2.77 16 20 C -0.09 -1.47 6.12 29.66 0.18 -1.29 16 21 C -0.11 -2.15 5.31 30.73 0.16 -1.98 16 22 H 0.03 1.60 7.60 -2.39 -0.02 1.58 16 23 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.05 2.60 6.07 -2.38 -0.01 2.58 16 25 H 0.03 1.44 6.57 -2.39 -0.02 1.42 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 2.95 6.07 -2.39 -0.01 2.94 16 28 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.34 11.53 6.77 -89.69 -0.61 10.93 16 32 H 0.06 1.82 8.11 -2.39 -0.02 1.80 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.84 8.05 -2.39 -0.02 1.82 16 35 H 0.06 1.65 8.08 -2.39 -0.02 1.63 16 36 H 0.10 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.11 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -56.73 314.51 3.42 -53.31 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.36 Total: 18.27 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 3.60 Total: -40.17 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -2.56 Total: -77.11 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -56.73 3.42 -53.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459731422.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.083 kcal (2) G-P(sol) polarization free energy of solvation -56.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds