Wall clock time and date at job start Sun Mar 29 2020 22:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47190 * 2 1 4 4 C 1.50705 * 109.47295 * 239.99444 * 2 1 3 5 5 H 1.07997 * 119.99869 * 241.35866 * 4 2 1 6 6 C 1.37879 * 119.99443 * 61.36666 * 4 2 1 7 7 N 1.31514 * 119.99479 * 193.96091 * 6 4 2 8 8 Si 1.86798 * 120.00351 * 13.95462 * 6 4 2 9 9 H 1.48500 * 109.46757 * 84.56253 * 8 6 4 10 10 H 1.48500 * 109.47263 * 204.55848 * 8 6 4 11 11 H 1.48500 * 109.47369 * 324.56067 * 8 6 4 12 12 C 1.53000 * 109.47172 * 119.99729 * 2 1 3 13 13 N 1.46902 * 109.47095 * 300.00184 * 12 2 1 14 14 C 1.46901 * 110.99868 * 179.97438 * 13 12 2 15 15 H 1.09001 * 112.90858 * 336.25073 * 14 13 12 16 16 C 1.53781 * 113.61282 * 107.50543 * 14 13 12 17 17 C 1.53782 * 87.08212 * 139.98028 * 16 14 13 18 18 C 1.53776 * 87.08043 * 334.56632 * 17 16 14 19 19 H 1.09001 * 113.61627 * 270.88301 * 18 17 16 20 20 C 1.52998 * 113.61854 * 140.06623 * 18 17 16 21 21 C 1.52997 * 117.50540 * 149.60901 * 20 18 17 22 22 C 1.53006 * 117.49882 * 80.94450 * 20 18 17 23 23 H 1.08997 * 109.47125 * 309.31682 * 1 2 3 24 24 H 1.08999 * 109.46979 * 69.32147 * 1 2 3 25 25 H 1.09003 * 109.47213 * 189.31768 * 1 2 3 26 26 H 1.08994 * 109.47120 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.46758 * 299.99731 * 3 2 1 28 28 H 1.08997 * 109.47164 * 59.99266 * 3 2 1 29 29 H 0.96996 * 119.99765 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.47322 * 180.02562 * 12 2 1 31 31 H 1.09004 * 109.46906 * 59.99923 * 12 2 1 32 32 H 1.00896 * 110.99974 * 303.95513 * 13 12 2 33 33 H 1.09001 * 113.61403 * 25.42872 * 16 14 13 34 34 H 1.08999 * 113.61643 * 254.52953 * 16 14 13 35 35 H 1.09000 * 113.61460 * 220.01909 * 17 16 14 36 36 H 1.08995 * 113.68955 * 89.12623 * 17 16 14 37 37 H 1.09001 * 115.54592 * 295.28825 * 20 18 17 38 38 H 1.09002 * 117.49464 * 359.97438 * 21 20 18 39 39 H 1.08998 * 117.50023 * 145.02532 * 21 20 18 40 40 H 1.09001 * 117.50147 * 214.98409 * 22 20 18 41 41 H 1.09003 * 117.49549 * 0.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6351 -1.6012 -1.1314 6 6 1.7227 -0.2233 -2.4825 7 7 1.9164 -0.9724 -3.5459 8 14 1.0278 1.5007 -2.6684 9 1 2.1419 2.4817 -2.7082 10 1 0.2474 1.5866 -3.9288 11 1 0.1418 1.8042 -1.5159 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0208 -0.6951 3.6703 15 1 2.2677 -1.7450 3.5127 16 6 3.1122 0.0888 4.4183 17 6 2.4082 -0.3274 5.7207 18 6 1.1189 -0.4510 4.8917 19 1 0.5465 0.4749 4.8338 20 6 0.2590 -1.6580 5.2720 21 6 -1.2552 -1.5311 5.0934 22 6 -0.6464 -1.5223 6.4979 23 1 -0.3633 0.6511 0.7950 24 1 -0.3633 0.3629 -0.9615 25 1 -0.3634 -1.0141 0.1664 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6982 -0.6298 -4.4268 30 1 3.1299 -0.7208 1.2495 31 1 1.6766 -1.7489 1.2493 32 1 1.8197 0.9436 2.4401 33 1 3.0849 1.1622 4.2309 34 1 4.1096 -0.3362 4.3061 35 1 2.3717 0.4640 6.4694 36 1 2.7601 -1.2765 6.1247 37 1 0.7081 -2.6331 5.0835 38 1 -1.6389 -0.5875 4.7055 39 1 -1.8024 -2.4229 4.7879 40 1 -0.7933 -2.4083 7.1156 41 1 -0.6297 -0.5729 7.0333 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459732137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:14 Heat of formation + Delta-G solvation = 50.328558 kcal Electronic energy + Delta-G solvation = -17502.710020 eV Core-core repulsion = 14998.241656 eV Total energy + Delta-G solvation = -2504.468364 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 237.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53797 -36.94772 -35.83342 -32.60138 -31.02309 -26.23269 -26.08913 -25.43168 -24.79866 -22.88956 -22.16461 -20.72547 -19.70719 -18.52524 -16.22047 -15.89886 -15.62701 -14.86670 -14.59411 -13.99189 -13.52416 -13.22927 -12.83276 -12.77154 -12.52956 -12.23000 -11.96878 -11.82659 -11.77776 -11.50840 -11.16109 -10.93240 -10.74400 -10.45056 -10.30041 -10.13516 -9.98603 -9.82499 -9.75191 -9.56843 -8.92077 -8.51732 -8.34055 -7.72677 -6.05413 -4.00673 3.33347 3.42579 3.46694 3.82580 4.46401 4.49982 4.71117 4.76871 4.89326 5.07069 5.11221 5.19633 5.27929 5.31076 5.56542 5.65155 5.73228 5.82011 5.87558 5.94738 5.98354 6.02205 6.13206 6.16277 6.23738 6.27568 6.37142 6.49318 6.59482 6.63049 6.80982 6.84618 6.97252 7.11539 7.44265 7.59262 7.68127 7.89758 7.99954 8.58473 8.99587 9.61024 11.08172 Molecular weight = 237.18amu Principal moments of inertia in cm(-1) A = 0.035703 B = 0.005804 C = 0.005521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.061640 B = 4822.931008 C = 5070.217062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.040 3.960 3 C -0.149 4.149 4 C -0.511 4.511 5 H 0.071 0.929 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.885 3.115 9 H -0.289 1.289 10 H -0.307 1.307 11 H -0.246 1.246 12 C 0.085 3.915 13 N -0.678 5.678 14 C 0.079 3.921 15 H 0.092 0.908 16 C -0.173 4.173 17 C -0.132 4.132 18 C -0.069 4.069 19 H 0.090 0.910 20 C -0.132 4.132 21 C -0.173 4.173 22 C -0.186 4.186 23 H 0.031 0.969 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.039 0.961 28 H 0.033 0.967 29 H 0.262 0.738 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.336 0.664 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 1.956 18.111 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.038 3.962 3 C -0.205 4.205 4 C -0.549 4.549 5 H 0.089 0.911 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.718 3.282 9 H -0.217 1.217 10 H -0.236 1.236 11 H -0.172 1.172 12 C -0.043 4.043 13 N -0.308 5.308 14 C -0.032 4.032 15 H 0.110 0.890 16 C -0.212 4.212 17 C -0.170 4.170 18 C -0.088 4.088 19 H 0.108 0.892 20 C -0.150 4.150 21 C -0.210 4.210 22 C -0.223 4.223 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.156 0.844 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.419 1.602 17.882 18.115 hybrid contribution 0.688 1.153 -0.322 1.380 sum -1.731 2.754 17.560 17.859 Atomic orbital electron populations 1.22059 0.97463 0.99702 0.99109 1.18487 0.92889 0.91453 0.93335 1.22358 1.00299 0.99192 0.98697 1.20876 1.33488 1.11987 0.88560 0.91136 1.24979 0.94724 0.97323 0.95846 1.69966 1.48906 1.35986 0.98654 0.87307 0.79359 0.85608 0.75976 1.21669 1.23616 1.17160 1.21965 0.95943 0.97760 0.88608 1.60497 1.63072 1.06011 1.01255 1.23043 0.92605 0.98250 0.89352 0.89000 1.23639 0.99218 1.00684 0.97677 1.22746 0.96847 1.01239 0.96201 1.22318 0.94109 0.96888 0.95492 0.89193 1.22181 0.92096 0.99287 1.01486 1.22910 0.95967 1.03232 0.98904 1.22909 1.05727 1.02562 0.91143 0.94967 0.93872 0.94119 0.93597 0.94271 0.94811 0.92787 0.96192 0.91839 0.84383 0.90242 0.91747 0.91833 0.90331 0.88286 0.88716 0.89212 0.89384 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 7.55 37.16 0.28 -2.54 16 2 C 0.04 0.90 0.57 -155.66 -0.09 0.82 16 3 C -0.15 -3.18 7.37 37.16 0.27 -2.91 16 4 C -0.51 -14.20 8.62 -34.44 -0.30 -14.49 16 5 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 6 C 0.07 2.10 5.32 -17.82 -0.09 2.01 16 7 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 8 Si 0.88 22.13 22.79 -169.99 -3.87 18.26 16 9 H -0.29 -7.16 7.10 56.52 0.40 -6.76 16 10 H -0.31 -7.83 7.11 56.52 0.40 -7.43 16 11 H -0.25 -5.73 4.65 56.52 0.26 -5.47 16 12 C 0.09 1.69 4.42 -3.82 -0.02 1.68 16 13 N -0.68 -11.13 6.01 -105.86 -0.64 -11.77 16 14 C 0.08 1.08 3.74 -66.90 -0.25 0.83 16 15 H 0.09 1.31 7.82 -51.93 -0.41 0.91 16 16 C -0.17 -2.04 7.70 -25.92 -0.20 -2.24 16 17 C -0.13 -1.38 7.64 -25.92 -0.20 -1.58 16 18 C -0.07 -0.82 3.61 -89.81 -0.32 -1.14 16 19 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 20 C -0.13 -1.52 5.42 -90.62 -0.49 -2.01 16 21 C -0.17 -1.98 10.24 -26.69 -0.27 -2.25 16 22 C -0.19 -1.87 10.26 -26.69 -0.27 -2.14 16 23 H 0.03 0.65 7.88 -51.93 -0.41 0.24 16 24 H 0.04 1.02 4.30 -51.93 -0.22 0.79 16 25 H 0.04 0.90 8.12 -51.93 -0.42 0.48 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.04 0.89 2.25 -51.93 -0.12 0.78 16 28 H 0.03 0.62 6.57 -51.93 -0.34 0.28 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 32 H 0.34 5.35 6.24 -39.29 -0.25 5.10 16 33 H 0.08 0.92 7.82 -51.93 -0.41 0.52 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.10 1.15 8.13 -51.93 -0.42 0.72 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -29.10 308.98 -8.36 -37.47 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.33 Total: 4.22 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -1.95 Total: -25.99 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.14 Total: -38.61 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -3.87 Total: 18.26 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.10 -8.36 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.797 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds